Microarray experiments to specifically-expressed genes

GSM ID -
Assay name E-MEXP-1344-raw-cel-1559561713
GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
310.8100.0203.8At4g160203769881--O.I.C.G.H.G.
292.6100.0210.8At2g38510818433MATE efflux protein-relatedF:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFAMO.I.C.G.H.G.
269.3100.044.7At1g23270838936unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBPFO.I.C.G.H.G.
267.4100.0238.9At3g06230819797ATMKK8member of MAP Kinase KinaseO.I.C.G.H.G.
260.9100.0229.8At3g43500823436unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
238.8100.041.1At5g43220--O.I.C.G.H.G.
217.0100.047.6At5g04640830341AGL99 (AGAMOUS-LIKE 99)F:transcription factor activity, DNA binding;P:N-terminal protein myristoylation, regulation of transcription, DNA-dependent;C:nucleus;PMFOBO.I.C.G.H.G.
214.6100.075.8At3g57210824888-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
191.1100.0133.0At3g42990823355unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
168.4100.039.6At2g19700816489unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
165.2100.096.4At2g166803768265transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
160.499.928.9At5g41490834150F-box family proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PFO.I.C.G.H.G.
160.099.9152.3At5g29210833050unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknownO.I.C.G.H.G.
149.399.989.0At5g36190833616-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
149.299.922.0At1g13760837936unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
123.299.953.4At5g50880835160unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
116.499.939.6At1g370573767056transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
113.899.933.1At5g41250834126exostosin family proteinF:catalytic activity;P:biological_process unknown;C:membrane;POMO.I.C.G.H.G.
95.399.920.5At5g53690835450unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
90.199.9121.6At2g21320816671zinc finger (B-box type) family proteinF:transcription factor activity, zinc ion binding;P:regulation of transcription;C:endomembrane system, intracellular;POMO.I.C.G.H.G.
83.799.917.5At1g02550837879invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
77.799.919.6At5g17030831566UGT78D3 (UDP-GLUCOSYL TRANSFERASE 78D3)F:quercetin 3-O-glucosyltransferase activity, flavonol 3-O-arabinosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVOFO.I.C.G.H.G.
77.599.926.1At2g30380817588-F:molecular_function unknown;P:biological_process unknown;C:unknown;POMFO.I.C.G.H.G.
70.899.938.3At1g32660840160F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
64.499.8190.5At2g31380817696STHa B-box zinc finger protein that interacts with COP1. contains a novel 11 amino acid motif at the C-terminus (also found at the N-terminus of HY5) that is involved in the COP1 interaction.O.I.C.G.H.G.
57.599.810.2At4g27190828827disease resistance protein (NBS-LRR class), putativeF:protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:defense response, apoptosis;C:cellular_component unknown;PMBOFVAO.I.C.G.H.G.
54.299.832.2At3g55580824723regulator of chromosome condensation (RCC1) family proteinF:binding;P:biological_process unknown;C:cellular_component unknown;MOBPFAVO.I.C.G.H.G.
53.399.816.1At2g41930818793ATP binding / kinase/ protein kinase/ protein serine/threonine kinaseF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPFBVAO.I.C.G.H.G.
46.299.887.9At5g54130835500--O.I.C.G.H.G.
45.899.810.9At5g04630830340CYP77A9member of CYP77AO.I.C.G.H.G.
45.199.8128.4At1g16850838256unknown proteinF:molecular_function unknown;P:response to salt stress;C:endomembrane system;PO.I.C.G.H.G.
43.399.8194.7At5g15950831452adenosylmethionine decarboxylase family proteinF:adenosylmethionine decarboxylase activity;P:spermidine biosynthetic process, spermine biosynthetic process, polyamine biosynthetic process;C:cellular_component unknown;PMFOBO.I.C.G.H.G.
41.699.860.2At3g17130820970invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:unknown;C:endomembrane system;PO.I.C.G.H.G.
41.699.852.9At1g80760844415NIP6Encodes a protein with boron transporter activity. It helps to preferentially direct boron to young developing tissues in the shoot, such as immature leaves, under low boron conditions. This boron channel appears to be impermeable to water, unlike the closely related NIP5;1 boron transporter. This protein also allows the transport of glycerol, urea, and formimide but not larger uncharged solutes such as arabitol and sucrose when it is expressed heterologously.O.I.C.G.H.G.
38.999.872.3At1g48100841228glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinF:polygalacturonase activity;P:carbohydrate metabolic process;C:unknown;FPBOMVAO.I.C.G.H.G.
38.699.812.6At3g16580820908F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:vacuole;PO.I.C.G.H.G.
37.599.764.1At5g42760834285-F:unknown;P:biological_process unknown;C:cellular_component unknown;BOAPMFO.I.C.G.H.G.
36.799.775.1At5g14760831328AO (L-ASPARTATE OXIDASE)At5g14760 encodes for L-aspartate oxidase involved in the early steps of NAD biosynthesis. In contrary to the EC 1.4.3.16 (l-aspartate oxidase - deaminating) the enzyme catalyzes the reaction L-aspartate + O2 = iminoaspartate (alpha-iminosuccinate) + H2O2O.I.C.G.H.G.
35.799.728.1At3g58070824976GIS (GLABROUS INFLORESCENCE STEMS)Putative transcription factor, contains C2H2 domain, regulates aspects of shoot maturation in Arabidopsis thaliana. GIS loss-of-function mutations affect the epidermal differentiation of inflorescence organs, causing a premature decrease in trichome production on successive leaves, stem internodes, and branches. Overexpression has the opposite effect on trichome initiation and causes other heterochronic phenotypes, affecting flowering and juvenileľadult leaf transition and inducing the formation of rosette leaves on inflorescence stems.O.I.C.G.H.G.
33.799.712.4At2g132503767965transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
31.999.7165.5At1g02820839304late embryogenesis abundant 3 family protein / LEA3 family proteinF:molecular_function unknown;P:embryonic development, response to stress;C:unknown;PO.I.C.G.H.G.
31.499.724.7At3g15310820762transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
30.799.7124.1At1g09350837457AtGolS3 (Arabidopsis thaliana galactinol synthase 3)F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:cellular_component unknown;PMFVBOO.I.C.G.H.G.
30.099.7358.2At2g42530818853COR15B (COLD REGULATED 15B)F:unknown;P:response to cold;C:chloroplast, chloroplast stroma, chloroplast envelope;PBOMFO.I.C.G.H.G.
29.799.7408.3At4g17090827419CT-BMY (CHLOROPLAST BETA-AMYLASE)Encodes a beta-amylase targeted to the chloroplast. Transgenic BMY8 RNAi lines fail to accumulate maltose during cold shock suggesting that maltose accumulation coincides with BMY8 expression. Apart from maltose, the sugar content of the RNAi lines were similar to wildtype (glucose and sucrose unaffected).O.I.C.G.H.G.
27.699.7118.6At5g17050831568UGT78D2 (UDP-GLUCOSYL TRANSFERASE 78D2)The At5g17050 encodes a anthocyanidin 3-O-glucosyltransferase which specifically glucosylates the 3-position of the flavonoid C-ring. Anthocyanidins such as cyanidin and pelargonidin as well as flavonols such as kaempferol and quercetin are accepted substrates.O.I.C.G.H.G.
27.499.7333.0At4g14690827119ELIP2 (EARLY LIGHT-INDUCIBLE PROTEIN 2)Encodes an early light-induced protein. ELIPs are thought not to be directly involved in the synthesis and assembly of specific photosynthetic complexes, but rather affect the biogenesis of all chlorophyll-binding complexes. A study (PMID 17553115) has shown that the chlorophyll synthesis pathway was downregulated as a result of constitutive ELIP2 expression, leading to decreased chlorophyll availability for the assembly of pigment-binding proteins for photosynthesis.O.I.C.G.H.G.
27.499.728.3At5g54470835535zinc finger (B-box type) family proteinF:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;POFMO.I.C.G.H.G.
26.799.784.5At5g07990830693TT7 (TRANSPARENT TESTA 7)Required for flavonoid 3' hydroxylase activity.O.I.C.G.H.G.
25.199.6124.0At5g62210836342embryo-specific protein-relatedF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPOFVBAO.I.C.G.H.G.
24.699.632.4At4g041403769795transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
23.899.674.5At4g00050828175UNE10 (unfertilized embryo sac 10)F:transcription factor activity, DNA binding;P:double fertilization forming a zygote and endosperm, regulation of transcription;C:nucleus;PMFOO.I.C.G.H.G.
23.799.623.0At2g15800816075transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
22.899.612.6At1g65990842912type 2 peroxiredoxin-related / thiol specific antioxidant / mal allergen family proteinF:oxidoreductase activity, antioxidant activity;P:biological_process unknown;C:cellular_component unknown;OBPFMAO.I.C.G.H.G.
22.599.629.0At1g05170839292galactosyltransferase family proteinF:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:membrane;MPOO.I.C.G.H.G.
22.099.657.9At1g650608428144CL3encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. mRNA levels are not induced in response to wounding or to fungal infection by P. parasitica. mRNA is expressed in flowers, to a lesser degree in mature leaves and siliques and marginally in seedling roots and bolting stems of mature plants. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, ferulic acid, cinnamic acid and 5-OH-ferulic acid. At4CL3 was unable to use sinapic acid as substrate.O.I.C.G.H.G.
21.699.693.0At5g15850831442COL1 (constans-like 1)Homologous to the flowering-time gene CONSTANS.O.I.C.G.H.G.
20.699.614.0At5g55680835662glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBMPFVAO.I.C.G.H.G.
20.099.648.4At1g78510844187SPS1 (solanesyl diphosphate synthase 1)Encodes a protein with solanesyl diphosphate synthase activity.O.I.C.G.H.G.
19.499.65.1At1g422003767228transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
19.399.661.9At2g35960818169NHL12Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression is not altered in response to cucumber mosaic virus or spermine.O.I.C.G.H.G.
18.699.598.4At5g05270830409chalcone-flavanone isomerase family proteinF:chalcone isomerase activity;P:flavonoid biosynthetic process;C:cellular_component unknown;PO.I.C.G.H.G.
18.499.5261.4At3g51240824287F3H (FLAVANONE 3-HYDROXYLASE)Encodes flavanone 3-hydroxylase that is coordinately expressed with chalcone synthase and chalcone isomerases. Regulates flavonoid biosynthesis.O.I.C.G.H.G.
18.399.554.5At4g17550827470transporter-relatedF:sugar:hydrogen symporter activity;P:carbohydrate transport;C:plasma membrane;BMFOPAO.I.C.G.H.G.
17.499.515.4At1g26790839220Dof-type zinc finger domain-containing proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:endomembrane system;POMFO.I.C.G.H.G.
17.199.5104.1At3g55120824678TT5 (TRANSPARENT TESTA 5)Catalyzes the conversion of chalcones into flavanones. Required for the accumulation of purple anthocyanins in leaves and stems.O.I.C.G.H.G.
16.999.5274.3At3g22840821855ELIP1 (EARLY LIGHT-INDUCABLE PROTEIN)Encodes an early light-inducible protein.O.I.C.G.H.G.
16.699.5224.8At1g62180842514APR2 (5'ADENYLYLPHOSPHOSULFATE REDUCTASE 2)encodes a adenosine 5'-phosphosulfate reductase, involved in sulfate assimilation. Is a major effect locus for natural variation of shoot sulfate content in Arabidopsis.O.I.C.G.H.G.
16.599.596.9At2g46830819296CCA1 (CIRCADIAN CLOCK ASSOCIATED 1)Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis.O.I.C.G.H.G.
16.599.511.5At1g01520839337myb family transcription factorF:transcription factor activity, DNA binding;P:response to salt stress, regulation of transcription, DNA-dependent;C:unknown;POMO.I.C.G.H.G.
16.499.5128.8At1g06000837109UDP-glucoronosyl/UDP-glucosyl transferase family proteinencodes a flavonol-7-O-rhamnosyltransferase involved in the formation of rhamnosylated flavonolsO.I.C.G.H.G.
16.499.549.9At1g78070844142-F:molecular_function unknown;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;PFOO.I.C.G.H.G.
16.299.583.3At3g44450823570unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
16.099.55.9At5g54620835551ankyrin repeat family proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVAO.I.C.G.H.G.
15.799.5108.4At5g06530830541ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:unknown;C:plasma membrane;BOMFAPVO.I.C.G.H.G.
15.499.588.2At5g17220831586ATGSTF12 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12)Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). Mutants display no pigments on leaves and stems.O.I.C.G.H.G.
15.299.416.8At1g01420837503UGT72B3 (UDP-GLUCOSYL TRANSFERASE 72B3)F:quercetin 3-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOFO.I.C.G.H.G.
13.999.476.3At5g53970835480aminotransferase, putativeencodes tyrosine aminotransferase which is strongly induced upon aging and coronatine treatmentO.I.C.G.H.G.
13.999.444.1At5g50800835152nodulin MtN3 family proteinF:unknown;P:unknown;C:endomembrane system, integral to membrane, membrane;PMOO.I.C.G.H.G.
13.699.4182.5At1g65490842861unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
13.599.425.6At4g38960830051zinc finger (B-box type) family proteinF:transcription factor activity, zinc ion binding;P:regulation of transcription;C:endomembrane system, intracellular;POMO.I.C.G.H.G.
13.399.4149.2At3g56290824796unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
13.199.453.3At5g52570835334BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2)Converts β-carotene to zeaxanthin via cryptoxanthin.O.I.C.G.H.G.
13.099.468.4At5g42570834264-F:molecular_function unknown;P:intracellular protein transport;C:endoplasmic reticulum, plasma membrane;MPOFABO.I.C.G.H.G.
12.699.3419.4At2g42540818854COR15A (COLD-REGULATED 15A)A cold-regulated gene whose product is targeted to the chloroplast and constitutive expression increases freezing tolerance in protoplasts in vitro and chloroplasts in vivo. NMR and x-ray diffraction studies suggest that COR15a alters the intrinsic curvature of the inner membrane of chloroplast envelope.O.I.C.G.H.G.
12.699.379.0At4g27560828865glycosyltransferase family proteinF:transferase activity, transferring glycosyl groups;P:response to salt stress, N-terminal protein myristoylation;C:cellular_component unknown;PMBFOVO.I.C.G.H.G.
12.699.336.4At2g41040818703methyltransferase-relatedF:methyltransferase activity;P:metabolic process;C:chloroplast, plastoglobule;BOAPFMO.I.C.G.H.G.
12.499.341.6At1g64500842758glutaredoxin family proteinF:electron carrier activity, protein disulfide oxidoreductase activity;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;PMBOFO.I.C.G.H.G.
12.499.323.3At3g15030820732TCP4 (TCP family transcription factor 4)Arabidopsis thaliana TCP family transcription factor. Regulated by miR319. Involved in heterchronic regulation of leaf differentiation.O.I.C.G.H.G.
11.899.336.8At5g62430836364CDF1 (CYCLING DOF FACTOR 1)Dof-type zinc finger domain-containing protein, similar to H-protein promoter binding factor-2a GI:3386546 from (Arabidopsis thaliana). Represses expression of Constans (CO), a circadian regulator of flowering time. Interacts with LKP2 and FKF1. Expression oscillates under constant light conditions. Mainly expressed in the vasculature of cotyledons, leaves and hypocotyls, but also in stomata. Localized to the nucleus and acts as a repressor of CONSTANS through binding to the Dof binding sites in the CO promoter. Protein gets degraded by FKF1 in the afternoon.O.I.C.G.H.G.
11.699.37.1At3g329173769306transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
11.599.331.0At2g076833768000transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
11.399.393.5At3g24190822005ABC1 family proteinF:protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;OBMPFAVO.I.C.G.H.G.
11.399.336.3At3g21750821729UGT71B1 (UDP-GLUCOSYL TRANSFERASE 71B1)F:quercetin 3-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOVFO.I.C.G.H.G.
11.399.330.7At5g50100835074-F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;OBPMO.I.C.G.H.G.
11.299.210.3At2g27870817333transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
11.199.26.3At2g24620816998S-locus glycoprotein family proteinF:unknown;P:recognition of pollen;C:cellular_component unknown;PO.I.C.G.H.G.
11.099.2285.0At5g52310835307LTI78 (LOW-TEMPERATURE-INDUCED 78)cold regulated gene, the 5' region of cor78 has cis-acting regulatory elements that can impart cold-regulated gene expressionO.I.C.G.H.G.
11.099.239.1At2g28550817403RAP2.7 (RELATED TO AP2.7)F:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent, vegetative to reproductive phase transition;C:nucleus;POBVO.I.C.G.H.G.
10.999.2314.8At2g28900817439ATOEP16-1 (OUTER PLASTID ENVELOPE PROTEIN 16-1)Encodes AtOEP16, a 16-KDa plastid outer membrane protein involved in plastid import of protochlorophyllide oxidoreductase A. Predominantly expressed in leaves and is also inducible by cold treatment.O.I.C.G.H.G.



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