CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID -

Assay name E-MEXP-1344-raw-cel-1559561623

GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
359.1 100.0 269.6 At3g43500 823436 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
326.5 100.0 48.1 At5g43220 - - O.I. C.G. H.G.
326.0 100.0 58.3 At5g04640 830341 AGL99 (AGAMOUS-LIKE 99) F:transcription factor activity, DNA binding;P:N-terminal protein myristoylation, regulation of transcription, DNA-dependent;C:nucleus;PMFOB O.I. C.G. H.G.
315.5 100.0 218.9 At2g38510 818433 MATE efflux protein-related F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFAM O.I. C.G. H.G.
309.8 100.0 257.2 At3g06230 819797 ATMKK8 member of MAP Kinase Kinase O.I. C.G. H.G.
296.7 100.0 199.2 At4g16020 3769881 - - O.I. C.G. H.G.
245.0 100.0 117.4 At2g16680 3768265 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
205.7 100.0 138.0 At3g42990 823355 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
203.4 100.0 73.8 At3g57210 824888 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
198.7 100.0 43.0 At2g19700 816489 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
175.4 100.0 96.5 At5g36190 833616 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
169.4 100.0 35.5 At1g23270 838936 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBPF O.I. C.G. H.G.
126.8 99.9 41.4 At1g37057 3767056 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
122.6 99.9 25.3 At5g41490 834150 F-box family protein F:unknown;P:biological_process unknown;C:cellular_component unknown;PF O.I. C.G. H.G.
117.2 99.9 52.1 At5g50880 835160 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
113.1 99.9 128.0 At5g29210 833050 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown O.I. C.G. H.G.
109.4 99.9 21.9 At5g53690 835450 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
106.9 99.9 32.1 At5g41250 834126 exostosin family protein F:catalytic activity;P:biological_process unknown;C:membrane;POM O.I. C.G. H.G.
98.2 99.9 19.0 At1g02550 837879 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
92.8 99.9 28.5 At2g30380 817588 - F:molecular_function unknown;P:biological_process unknown;C:unknown;POMF O.I. C.G. H.G.
92.7 99.9 215.6 At1g09350 837457 AtGolS3 (Arabidopsis thaliana galactinol synthase 3) F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:cellular_component unknown;PMFVBO O.I. C.G. H.G.
79.9 99.9 16.1 At1g13760 837936 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
65.2 99.8 154.5 At1g16850 838256 unknown protein F:molecular_function unknown;P:response to salt stress;C:endomembrane system;P O.I. C.G. H.G.
60.6 99.8 35.4 At1g32660 840160 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
59.0 99.8 129.6 At1g51090 841532 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;PBOMVF O.I. C.G. H.G.
56.2 99.8 10.1 At4g27190 828827 disease resistance protein (NBS-LRR class), putative F:protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:defense response, apoptosis;C:cellular_component unknown;PMBOFVA O.I. C.G. H.G.
53.9 99.8 14.9 At3g16580 820908 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:vacuole;P O.I. C.G. H.G.
48.4 99.8 11.2 At5g04630 830340 CYP77A9 member of CYP77A O.I. C.G. H.G.
46.3 99.8 15.0 At2g41930 818793 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPFBVA O.I. C.G. H.G.
32.2 99.7 70.3 At1g53035 841737 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
31.5 99.7 12.5 At5g17030 831566 UGT78D3 (UDP-GLUCOSYL TRANSFERASE 78D3) F:quercetin 3-O-glucosyltransferase activity, flavonol 3-O-arabinosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVOF O.I. C.G. H.G.
31.2 99.7 12.0 At2g13250 3767965 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
29.9 99.7 51.2 At3g55760 824742 unknown protein F:unknown;P:unknown;C:chloroplast stroma, chloroplast;POMFB O.I. C.G. H.G.
28.6 99.7 34.9 At4g04140 3769795 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
28.1 99.7 397.6 At4g17090 827419 CT-BMY (CHLOROPLAST BETA-AMYLASE) Encodes a beta-amylase targeted to the chloroplast. Transgenic BMY8 RNAi lines fail to accumulate maltose during cold shock suggesting that maltose accumulation coincides with BMY8 expression. Apart from maltose, the sugar content of the RNAi lines were similar to wildtype (glucose and sucrose unaffected). O.I. C.G. H.G.
27.6 99.7 334.4 At4g14690 827119 ELIP2 (EARLY LIGHT-INDUCIBLE PROTEIN 2) Encodes an early light-induced protein. ELIPs are thought not to be directly involved in the synthesis and assembly of specific photosynthetic complexes, but rather affect the biogenesis of all chlorophyll-binding complexes. A study (PMID 17553115) has shown that the chlorophyll synthesis pathway was downregulated as a result of constitutive ELIP2 expression, leading to decreased chlorophyll availability for the assembly of pigment-binding proteins for photosynthesis. O.I. C.G. H.G.
27.6 99.7 49.0 At3g17130 820970 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:unknown;C:endomembrane system;P O.I. C.G. H.G.
24.1 99.6 23.3 At2g15800 816075 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
21.8 99.6 37.1 At3g09540 820111 pectate lyase family protein F:lyase activity, pectate lyase activity;P:N-terminal protein myristoylation;C:unknown;BPFO O.I. C.G. H.G.
21.5 99.6 6.8 At5g54620 835551 ankyrin repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVA O.I. C.G. H.G.
20.1 99.6 293.3 At2g42530 818853 COR15B (COLD REGULATED 15B) F:unknown;P:response to cold;C:chloroplast, chloroplast stroma, chloroplast envelope;PBOMF O.I. C.G. H.G.
19.6 99.6 421.9 At2g28900 817439 ATOEP16-1 (OUTER PLASTID ENVELOPE PROTEIN 16-1) Encodes AtOEP16, a 16-KDa plastid outer membrane protein involved in plastid import of protochlorophyllide oxidoreductase A. Predominantly expressed in leaves and is also inducible by cold treatment. O.I. C.G. H.G.
19.1 99.6 5.0 At1g42200 3767228 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
19.0 99.5 50.5 At1g48100 841228 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:unknown;FPBOMVA O.I. C.G. H.G.
18.8 99.5 176.2 At1g29395 839815 COR414-TM1 encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment. Possibly targeted to thylakoid membrane. O.I. C.G. H.G.
18.6 99.5 41.6 At4g15130 827179 catalytic/ choline-phosphate cytidylyltransferase/ nucleotidyltransferase F:choline-phosphate cytidylyltransferase activity, catalytic activity, nucleotidyltransferase activity;P:response to cold, biosynthetic process;C:unknown;OMBFPA O.I. C.G. H.G.
18.1 99.5 8.9 At3g32917 3769306 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
18.0 99.5 50.1 At2g28550 817403 RAP2.7 (RELATED TO AP2.7) F:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent, vegetative to reproductive phase transition;C:nucleus;POBV O.I. C.G. H.G.
18.0 99.5 28.0 At3g15030 820732 TCP4 (TCP family transcription factor 4) Arabidopsis thaliana TCP family transcription factor. Regulated by miR319. Involved in heterchronic regulation of leaf differentiation. O.I. C.G. H.G.
16.9 99.5 129.9 At1g47710 841182 serpin, putative / serine protease inhibitor, putative F:serine-type endopeptidase inhibitor activity, cysteine-type endopeptidase inhibitor activity;P:biological_process unknown;C:apoplast;MVPBOAF O.I. C.G. H.G.
16.8 99.5 352.4 At5g52310 835307 LTI78 (LOW-TEMPERATURE-INDUCED 78) cold regulated gene, the 5' region of cor78 has cis-acting regulatory elements that can impart cold-regulated gene expression O.I. C.G. H.G.
16.3 99.5 12.5 At5g55680 835662 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBMPFVA O.I. C.G. H.G.
16.3 99.5 10.6 At1g65990 842912 type 2 peroxiredoxin-related / thiol specific antioxidant / mal allergen family protein F:oxidoreductase activity, antioxidant activity;P:biological_process unknown;C:cellular_component unknown;OBPFMA O.I. C.G. H.G.
16.2 99.5 36.8 At2g07683 3768000 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
16.0 99.5 39.7 At3g14890 820718 phosphoesterase F:DNA binding, catalytic activity, zinc ion binding;P:unknown;C:unknown;MOFPVBA O.I. C.G. H.G.
15.9 99.5 46.2 At1g51610 841586 cation efflux family protein / metal tolerance protein, putative (MTPc4) F:cation transmembrane transporter activity, efflux transmembrane transporter activity;P:cation transport;C:membrane;BOMAP O.I. C.G. H.G.
15.8 99.5 469.2 At2g42540 818854 COR15A (COLD-REGULATED 15A) A cold-regulated gene whose product is targeted to the chloroplast and constitutive expression increases freezing tolerance in protoplasts in vitro and chloroplasts in vivo. NMR and x-ray diffraction studies suggest that COR15a alters the intrinsic curvature of the inner membrane of chloroplast envelope. O.I. C.G. H.G.
15.8 99.5 33.3 At1g32860 840180 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;POF O.I. C.G. H.G.
15.7 99.5 13.8 At4g34650 829617 SQS2 (SQUALENE SYNTHASE 2) Encodes a protein with similarity to squalene synthase which catalyzes the first committed step in sterol biosynthesis. To date no experimental evidence exists that SQS2 functions as a squalene synthase and some experiments indicate it does not have this function. O.I. C.G. H.G.
14.6 99.4 18.0 At3g58070 824976 GIS (GLABROUS INFLORESCENCE STEMS) Putative transcription factor, contains C2H2 domain, regulates aspects of shoot maturation in Arabidopsis thaliana. GIS loss-of-function mutations affect the epidermal differentiation of inflorescence organs, causing a premature decrease in trichome production on successive leaves, stem internodes, and branches. Overexpression has the opposite effect on trichome initiation and causes other heterochronic phenotypes, affecting flowering and juvenile�adult leaf transition and inducing the formation of rosette leaves on inflorescence stems. O.I. C.G. H.G.
14.6 99.4 11.8 At2g27870 817333 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
14.5 99.4 94.3 At5g62210 836342 embryo-specific protein-related F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPOFVBA O.I. C.G. H.G.
14.2 99.4 32.2 At1g16400 838210 CYP79F2 Encodes cytochrome P450 CYP79F2. O.I. C.G. H.G.
13.4 99.4 81.6 At4g27560 828865 glycosyltransferase family protein F:transferase activity, transferring glycosyl groups;P:response to salt stress, N-terminal protein myristoylation;C:cellular_component unknown;PMBFOV O.I. C.G. H.G.
13.4 99.4 69.6 At5g42570 834264 - F:molecular_function unknown;P:intracellular protein transport;C:endoplasmic reticulum, plasma membrane;MPOFAB O.I. C.G. H.G.
13.0 99.4 239.8 At3g22840 821855 ELIP1 (EARLY LIGHT-INDUCABLE PROTEIN) Encodes an early light-inducible protein. O.I. C.G. H.G.
12.9 99.3 78.0 At4g12030 826811 bile acid:sodium symporter family protein F:transporter activity, bile acid:sodium symporter activity;P:sodium ion transport;C:membrane;OBMPA O.I. C.G. H.G.
12.7 99.3 358.0 At3g50970 824261 LTI30 (LOW TEMPERATURE-INDUCED 30) Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer freeze tolerance. Located in membranes. mRNA upregulated by water deprivation and abscisic acid. O.I. C.G. H.G.
12.7 99.3 187.5 At2g39800 818566 P5CS1 (DELTA1-PYRROLINE-5-CARBOXYLATE SYNTHASE 1) encodes a delta1-pyrroline-5-carboxylate synthase that catalyzes the rate-limiting enzyme in the biosynthesis of proline. Gene is expressed in reproductive organs and tissues under non-stress conditions but in the whole plant under water-limiting condition. Expression is also induced by abscisic acid and salt stress in a light-dependent manner. P5CS1 appears to be involved in salt stress responses related to proline accumulation, including protection from reactive oxidative species. P5CS1 appears to be present in different cells and/or different subcellular locations from P5CS2 in a tissue-dependent manner. O.I. C.G. H.G.
12.7 99.3 45.4 At4g17550 827470 transporter-related F:sugar:hydrogen symporter activity;P:carbohydrate transport;C:plasma membrane;BMFOPA O.I. C.G. H.G.
12.7 99.3 44.9 At5g27930 832860 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:cellular_component unknown;PMOFVB O.I. C.G. H.G.
12.1 99.3 17.6 At4g37320 829887 CYP81D5 member of CYP81D O.I. C.G. H.G.
12.1 99.3 6.6 At2g24620 816998 S-locus glycoprotein family protein F:unknown;P:recognition of pollen;C:cellular_component unknown;P O.I. C.G. H.G.
11.9 99.3 111.7 At4g38580 830015 ATFP6 (FARNESYLATED PROTEIN 6) putative farnesylated protein (At4g38580) mRNA, complete O.I. C.G. H.G.
11.5 99.3 84.0 At5g57110 835815 ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8) Arabidopsis-autoinhibited Ca2+ -ATPase, isoform 8, contains all of the characteristic motifs of Ca2+ -transporting P-type Ca2+ -ATPases and is localized to the plasma membrane. O.I. C.G. H.G.
11.5 99.3 26.4 At5g48250 834878 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:unknown;C:plasma membrane;POM O.I. C.G. H.G.
11.4 99.3 40.0 At5g50800 835152 nodulin MtN3 family protein F:unknown;P:unknown;C:endomembrane system, integral to membrane, membrane;PMO O.I. C.G. H.G.
11.2 99.2 35.8 At3g02250 821223 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
11.0 99.2 128.6 At1g69870 843323 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:response to salt stress, oligopeptide transport;C:plasma membrane, membrane;PBMFO O.I. C.G. H.G.
10.8 99.2 35.5 At1g67850 843111 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO O.I. C.G. H.G.
10.7 99.2 51.4 At5g25110 832582 CIPK25 (CBL-INTERACTING PROTEIN KINASE 25) member of AtCIPKs O.I. C.G. H.G.
10.6 99.2 44.4 At1g70900 843429 unknown protein F:molecular_function unknown;P:unknown;C:unknown;P O.I. C.G. H.G.
10.5 99.2 35.1 At1g78510 844187 SPS1 (solanesyl diphosphate synthase 1) Encodes a protein with solanesyl diphosphate synthase activity. O.I. C.G. H.G.
10.3 99.2 44.6 At4g18390 827568 TCP family transcription factor, putative F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;POMFB O.I. C.G. H.G.
10.3 99.2 14.9 At3g05660 819733 AtRLP33 (Receptor Like Protein 33) F:protein binding, kinase activity;P:signal transduction, defense response;C:chloroplast;PMOBFAV O.I. C.G. H.G.
10.1 99.2 44.8 At2g35960 818169 NHL12 Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression is not altered in response to cucumber mosaic virus or spermine. O.I. C.G. H.G.
9.9 99.1 58.9 At5g59480 836067 haloacid dehalogenase-like hydrolase family protein F:hydrolase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;OBPFA O.I. C.G. H.G.
9.8 99.1 595.1 At1g20450 838633 ERD10 (EARLY RESPONSIVE TO DEHYDRATION 10) Encodes a gene induced by low temperature and dehydration. Inhibits e.coli growth while overexpressed. Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer cold tolerance. Localized to membranes and cytoplasm. O.I. C.G. H.G.
9.8 99.1 337.9 At1g01470 837071 LEA14 (LATE EMBRYOGENESIS ABUNDANT 14) Encodes late-embryogenesis abundant protein whose mRNA levels are induced in response to wounding and light stress. Might be involved in protection against dessication. O.I. C.G. H.G.
9.6 99.1 86.3 At3g24190 822005 ABC1 family protein F:protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;OBMPFAV O.I. C.G. H.G.
9.4 99.1 512.8 At1g20440 838632 COR47 (COLD-REGULATED 47) Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. Cold regulated gene, amino acid sequence homology with Group II LEA (late embryogenesis abundant) proteins. Also responds to osmotic stress, ABA, dehydration and inhibits e.coli growth while overexpressed. COR47 and RAB18 double overexpressor plants are cold tolerant. O.I. C.G. H.G.
9.4 99.1 14.0 At1g46768 841117 RAP2.1 (related to AP2 1) encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family (RAP2.1). The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.9 and RAP2.10. O.I. C.G. H.G.
9.2 99.1 44.2 At1g27760 839669 interferon-related developmental regulator family protein / IFRD protein family Encodes a protein with similarity to human interferon-related developmental regulator (IFRD)that is involved in salt tolerance. Loss of function mutations are hypersensitive to salt stress and have reduced fertility. SAT32 is found in the cytoplasm but appears to translocate to the nucleus when plants are subject to salt stress. O.I. C.G. H.G.
9.1 99.1 165.0 At5g20830 832206 SUS1 (SUCROSE SYNTHASE 1) Encodes a protein with sucrose synthase activity (SUS1). O.I. C.G. H.G.
8.9 99.0 82.4 At1g73480 843683 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:unknown;BOPMFVA O.I. C.G. H.G.
8.8 99.0 67.0 At5g17050 831568 UGT78D2 (UDP-GLUCOSYL TRANSFERASE 78D2) The At5g17050 encodes a anthocyanidin 3-O-glucosyltransferase which specifically glucosylates the 3-position of the flavonoid C-ring. Anthocyanidins such as cyanidin and pelargonidin as well as flavonols such as kaempferol and quercetin are accepted substrates. O.I. C.G. H.G.
8.8 99.0 19.1 At5g41460 834147 fringe-related protein F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:unknown;MPFO O.I. C.G. H.G.
8.8 99.0 9.7 At2g35700 818139 ERF38 (ERF FAMILY PROTEIN 38) encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. Thought to be involved in secondary cell wall metabolism. O.I. C.G. H.G.
8.6 99.0 92.0 At3g04550 819611 unknown protein F:unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;BPMO O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
359.1	100.0	269.6	At3g43500	823436	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
326.5	100.0	48.1	At5g43220		-	-	O.I.	C.G.	H.G.
326.0	100.0	58.3	At5g04640	830341	AGL99 (AGAMOUS-LIKE 99)	F:transcription factor activity, DNA binding;P:N-terminal protein myristoylation, regulation of transcription, DNA-dependent;C:nucleus;PMFOB	O.I.	C.G.	H.G.
315.5	100.0	218.9	At2g38510	818433	MATE efflux protein-related	F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFAM	O.I.	C.G.	H.G.
309.8	100.0	257.2	At3g06230	819797	ATMKK8	member of MAP Kinase Kinase	O.I.	C.G.	H.G.
296.7	100.0	199.2	At4g16020	3769881	-	-	O.I.	C.G.	H.G.
245.0	100.0	117.4	At2g16680	3768265	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
205.7	100.0	138.0	At3g42990	823355	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
203.4	100.0	73.8	At3g57210	824888	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
198.7	100.0	43.0	At2g19700	816489	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
175.4	100.0	96.5	At5g36190	833616	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
169.4	100.0	35.5	At1g23270	838936	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBPF	O.I.	C.G.	H.G.
126.8	99.9	41.4	At1g37057	3767056	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
122.6	99.9	25.3	At5g41490	834150	F-box family protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
117.2	99.9	52.1	At5g50880	835160	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
113.1	99.9	128.0	At5g29210	833050	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown	O.I.	C.G.	H.G.
109.4	99.9	21.9	At5g53690	835450	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
106.9	99.9	32.1	At5g41250	834126	exostosin family protein	F:catalytic activity;P:biological_process unknown;C:membrane;POM	O.I.	C.G.	H.G.
98.2	99.9	19.0	At1g02550	837879	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
92.8	99.9	28.5	At2g30380	817588	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;POMF	O.I.	C.G.	H.G.
92.7	99.9	215.6	At1g09350	837457	AtGolS3 (Arabidopsis thaliana galactinol synthase 3)	F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:cellular_component unknown;PMFVBO	O.I.	C.G.	H.G.
79.9	99.9	16.1	At1g13760	837936	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
65.2	99.8	154.5	At1g16850	838256	unknown protein	F:molecular_function unknown;P:response to salt stress;C:endomembrane system;P	O.I.	C.G.	H.G.
60.6	99.8	35.4	At1g32660	840160	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
59.0	99.8	129.6	At1g51090	841532	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;PBOMVF	O.I.	C.G.	H.G.
56.2	99.8	10.1	At4g27190	828827	disease resistance protein (NBS-LRR class), putative	F:protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:defense response, apoptosis;C:cellular_component unknown;PMBOFVA	O.I.	C.G.	H.G.
53.9	99.8	14.9	At3g16580	820908	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:vacuole;P	O.I.	C.G.	H.G.
48.4	99.8	11.2	At5g04630	830340	CYP77A9	member of CYP77A	O.I.	C.G.	H.G.
46.3	99.8	15.0	At2g41930	818793	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPFBVA	O.I.	C.G.	H.G.
32.2	99.7	70.3	At1g53035	841737	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
31.5	99.7	12.5	At5g17030	831566	UGT78D3 (UDP-GLUCOSYL TRANSFERASE 78D3)	F:quercetin 3-O-glucosyltransferase activity, flavonol 3-O-arabinosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVOF	O.I.	C.G.	H.G.
31.2	99.7	12.0	At2g13250	3767965	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
29.9	99.7	51.2	At3g55760	824742	unknown protein	F:unknown;P:unknown;C:chloroplast stroma, chloroplast;POMFB	O.I.	C.G.	H.G.
28.6	99.7	34.9	At4g04140	3769795	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
28.1	99.7	397.6	At4g17090	827419	CT-BMY (CHLOROPLAST BETA-AMYLASE)	Encodes a beta-amylase targeted to the chloroplast. Transgenic BMY8 RNAi lines fail to accumulate maltose during cold shock suggesting that maltose accumulation coincides with BMY8 expression. Apart from maltose, the sugar content of the RNAi lines were similar to wildtype (glucose and sucrose unaffected).	O.I.	C.G.	H.G.
27.6	99.7	334.4	At4g14690	827119	ELIP2 (EARLY LIGHT-INDUCIBLE PROTEIN 2)	Encodes an early light-induced protein. ELIPs are thought not to be directly involved in the synthesis and assembly of specific photosynthetic complexes, but rather affect the biogenesis of all chlorophyll-binding complexes. A study (PMID 17553115) has shown that the chlorophyll synthesis pathway was downregulated as a result of constitutive ELIP2 expression, leading to decreased chlorophyll availability for the assembly of pigment-binding proteins for photosynthesis.	O.I.	C.G.	H.G.
27.6	99.7	49.0	At3g17130	820970	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
24.1	99.6	23.3	At2g15800	816075	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
21.8	99.6	37.1	At3g09540	820111	pectate lyase family protein	F:lyase activity, pectate lyase activity;P:N-terminal protein myristoylation;C:unknown;BPFO	O.I.	C.G.	H.G.
21.5	99.6	6.8	At5g54620	835551	ankyrin repeat family protein	F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVA	O.I.	C.G.	H.G.
20.1	99.6	293.3	At2g42530	818853	COR15B (COLD REGULATED 15B)	F:unknown;P:response to cold;C:chloroplast, chloroplast stroma, chloroplast envelope;PBOMF	O.I.	C.G.	H.G.
19.6	99.6	421.9	At2g28900	817439	ATOEP16-1 (OUTER PLASTID ENVELOPE PROTEIN 16-1)	Encodes AtOEP16, a 16-KDa plastid outer membrane protein involved in plastid import of protochlorophyllide oxidoreductase A. Predominantly expressed in leaves and is also inducible by cold treatment.	O.I.	C.G.	H.G.
19.1	99.6	5.0	At1g42200	3767228	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
19.0	99.5	50.5	At1g48100	841228	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	F:polygalacturonase activity;P:carbohydrate metabolic process;C:unknown;FPBOMVA	O.I.	C.G.	H.G.
18.8	99.5	176.2	At1g29395	839815	COR414-TM1	encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment. Possibly targeted to thylakoid membrane.	O.I.	C.G.	H.G.
18.6	99.5	41.6	At4g15130	827179	catalytic/ choline-phosphate cytidylyltransferase/ nucleotidyltransferase	F:choline-phosphate cytidylyltransferase activity, catalytic activity, nucleotidyltransferase activity;P:response to cold, biosynthetic process;C:unknown;OMBFPA	O.I.	C.G.	H.G.
18.1	99.5	8.9	At3g32917	3769306	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
18.0	99.5	50.1	At2g28550	817403	RAP2.7 (RELATED TO AP2.7)	F:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent, vegetative to reproductive phase transition;C:nucleus;POBV	O.I.	C.G.	H.G.
18.0	99.5	28.0	At3g15030	820732	TCP4 (TCP family transcription factor 4)	Arabidopsis thaliana TCP family transcription factor. Regulated by miR319. Involved in heterchronic regulation of leaf differentiation.	O.I.	C.G.	H.G.
16.9	99.5	129.9	At1g47710	841182	serpin, putative / serine protease inhibitor, putative	F:serine-type endopeptidase inhibitor activity, cysteine-type endopeptidase inhibitor activity;P:biological_process unknown;C:apoplast;MVPBOAF	O.I.	C.G.	H.G.
16.8	99.5	352.4	At5g52310	835307	LTI78 (LOW-TEMPERATURE-INDUCED 78)	cold regulated gene, the 5' region of cor78 has cis-acting regulatory elements that can impart cold-regulated gene expression	O.I.	C.G.	H.G.
16.3	99.5	12.5	At5g55680	835662	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBMPFVA	O.I.	C.G.	H.G.
16.3	99.5	10.6	At1g65990	842912	type 2 peroxiredoxin-related / thiol specific antioxidant / mal allergen family protein	F:oxidoreductase activity, antioxidant activity;P:biological_process unknown;C:cellular_component unknown;OBPFMA	O.I.	C.G.	H.G.
16.2	99.5	36.8	At2g07683	3768000	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
16.0	99.5	39.7	At3g14890	820718	phosphoesterase	F:DNA binding, catalytic activity, zinc ion binding;P:unknown;C:unknown;MOFPVBA	O.I.	C.G.	H.G.
15.9	99.5	46.2	At1g51610	841586	cation efflux family protein / metal tolerance protein, putative (MTPc4)	F:cation transmembrane transporter activity, efflux transmembrane transporter activity;P:cation transport;C:membrane;BOMAP	O.I.	C.G.	H.G.
15.8	99.5	469.2	At2g42540	818854	COR15A (COLD-REGULATED 15A)	A cold-regulated gene whose product is targeted to the chloroplast and constitutive expression increases freezing tolerance in protoplasts in vitro and chloroplasts in vivo. NMR and x-ray diffraction studies suggest that COR15a alters the intrinsic curvature of the inner membrane of chloroplast envelope.	O.I.	C.G.	H.G.
15.8	99.5	33.3	At1g32860	840180	glycosyl hydrolase family 17 protein	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;POF	O.I.	C.G.	H.G.
15.7	99.5	13.8	At4g34650	829617	SQS2 (SQUALENE SYNTHASE 2)	Encodes a protein with similarity to squalene synthase which catalyzes the first committed step in sterol biosynthesis. To date no experimental evidence exists that SQS2 functions as a squalene synthase and some experiments indicate it does not have this function.	O.I.	C.G.	H.G.
14.6	99.4	18.0	At3g58070	824976	GIS (GLABROUS INFLORESCENCE STEMS)	Putative transcription factor, contains C2H2 domain, regulates aspects of shoot maturation in Arabidopsis thaliana. GIS loss-of-function mutations affect the epidermal differentiation of inflorescence organs, causing a premature decrease in trichome production on successive leaves, stem internodes, and branches. Overexpression has the opposite effect on trichome initiation and causes other heterochronic phenotypes, affecting flowering and juvenile�adult leaf transition and inducing the formation of rosette leaves on inflorescence stems.	O.I.	C.G.	H.G.
14.6	99.4	11.8	At2g27870	817333	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
14.5	99.4	94.3	At5g62210	836342	embryo-specific protein-related	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPOFVBA	O.I.	C.G.	H.G.
14.2	99.4	32.2	At1g16400	838210	CYP79F2	Encodes cytochrome P450 CYP79F2.	O.I.	C.G.	H.G.
13.4	99.4	81.6	At4g27560	828865	glycosyltransferase family protein	F:transferase activity, transferring glycosyl groups;P:response to salt stress, N-terminal protein myristoylation;C:cellular_component unknown;PMBFOV	O.I.	C.G.	H.G.
13.4	99.4	69.6	At5g42570	834264	-	F:molecular_function unknown;P:intracellular protein transport;C:endoplasmic reticulum, plasma membrane;MPOFAB	O.I.	C.G.	H.G.
13.0	99.4	239.8	At3g22840	821855	ELIP1 (EARLY LIGHT-INDUCABLE PROTEIN)	Encodes an early light-inducible protein.	O.I.	C.G.	H.G.
12.9	99.3	78.0	At4g12030	826811	bile acid:sodium symporter family protein	F:transporter activity, bile acid:sodium symporter activity;P:sodium ion transport;C:membrane;OBMPA	O.I.	C.G.	H.G.
12.7	99.3	358.0	At3g50970	824261	LTI30 (LOW TEMPERATURE-INDUCED 30)	Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer freeze tolerance. Located in membranes. mRNA upregulated by water deprivation and abscisic acid.	O.I.	C.G.	H.G.
12.7	99.3	187.5	At2g39800	818566	P5CS1 (DELTA1-PYRROLINE-5-CARBOXYLATE SYNTHASE 1)	encodes a delta1-pyrroline-5-carboxylate synthase that catalyzes the rate-limiting enzyme in the biosynthesis of proline. Gene is expressed in reproductive organs and tissues under non-stress conditions but in the whole plant under water-limiting condition. Expression is also induced by abscisic acid and salt stress in a light-dependent manner. P5CS1 appears to be involved in salt stress responses related to proline accumulation, including protection from reactive oxidative species. P5CS1 appears to be present in different cells and/or different subcellular locations from P5CS2 in a tissue-dependent manner.	O.I.	C.G.	H.G.
12.7	99.3	45.4	At4g17550	827470	transporter-related	F:sugar:hydrogen symporter activity;P:carbohydrate transport;C:plasma membrane;BMFOPA	O.I.	C.G.	H.G.
12.7	99.3	44.9	At5g27930	832860	protein phosphatase 2C, putative / PP2C, putative	F:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:cellular_component unknown;PMOFVB	O.I.	C.G.	H.G.
12.1	99.3	17.6	At4g37320	829887	CYP81D5	member of CYP81D	O.I.	C.G.	H.G.
12.1	99.3	6.6	At2g24620	816998	S-locus glycoprotein family protein	F:unknown;P:recognition of pollen;C:cellular_component unknown;P	O.I.	C.G.	H.G.
11.9	99.3	111.7	At4g38580	830015	ATFP6 (FARNESYLATED PROTEIN 6)	putative farnesylated protein (At4g38580) mRNA, complete	O.I.	C.G.	H.G.
11.5	99.3	84.0	At5g57110	835815	ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8)	Arabidopsis-autoinhibited Ca2+ -ATPase, isoform 8, contains all of the characteristic motifs of Ca2+ -transporting P-type Ca2+ -ATPases and is localized to the plasma membrane.	O.I.	C.G.	H.G.
11.5	99.3	26.4	At5g48250	834878	zinc finger (B-box type) family protein	F:transcription factor activity, zinc ion binding;P:unknown;C:plasma membrane;POM	O.I.	C.G.	H.G.
11.4	99.3	40.0	At5g50800	835152	nodulin MtN3 family protein	F:unknown;P:unknown;C:endomembrane system, integral to membrane, membrane;PMO	O.I.	C.G.	H.G.
11.2	99.2	35.8	At3g02250	821223	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
11.0	99.2	128.6	At1g69870	843323	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:response to salt stress, oligopeptide transport;C:plasma membrane, membrane;PBMFO	O.I.	C.G.	H.G.
10.8	99.2	35.5	At1g67850	843111	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO	O.I.	C.G.	H.G.
10.7	99.2	51.4	At5g25110	832582	CIPK25 (CBL-INTERACTING PROTEIN KINASE 25)	member of AtCIPKs	O.I.	C.G.	H.G.
10.6	99.2	44.4	At1g70900	843429	unknown protein	F:molecular_function unknown;P:unknown;C:unknown;P	O.I.	C.G.	H.G.
10.5	99.2	35.1	At1g78510	844187	SPS1 (solanesyl diphosphate synthase 1)	Encodes a protein with solanesyl diphosphate synthase activity.	O.I.	C.G.	H.G.
10.3	99.2	44.6	At4g18390	827568	TCP family transcription factor, putative	F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;POMFB	O.I.	C.G.	H.G.
10.3	99.2	14.9	At3g05660	819733	AtRLP33 (Receptor Like Protein 33)	F:protein binding, kinase activity;P:signal transduction, defense response;C:chloroplast;PMOBFAV	O.I.	C.G.	H.G.
10.1	99.2	44.8	At2g35960	818169	NHL12	Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression is not altered in response to cucumber mosaic virus or spermine.	O.I.	C.G.	H.G.
9.9	99.1	58.9	At5g59480	836067	haloacid dehalogenase-like hydrolase family protein	F:hydrolase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;OBPFA	O.I.	C.G.	H.G.
9.8	99.1	595.1	At1g20450	838633	ERD10 (EARLY RESPONSIVE TO DEHYDRATION 10)	Encodes a gene induced by low temperature and dehydration. Inhibits e.coli growth while overexpressed. Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer cold tolerance. Localized to membranes and cytoplasm.	O.I.	C.G.	H.G.
9.8	99.1	337.9	At1g01470	837071	LEA14 (LATE EMBRYOGENESIS ABUNDANT 14)	Encodes late-embryogenesis abundant protein whose mRNA levels are induced in response to wounding and light stress. Might be involved in protection against dessication.	O.I.	C.G.	H.G.
9.6	99.1	86.3	At3g24190	822005	ABC1 family protein	F:protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;OBMPFAV	O.I.	C.G.	H.G.
9.4	99.1	512.8	At1g20440	838632	COR47 (COLD-REGULATED 47)	Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. Cold regulated gene, amino acid sequence homology with Group II LEA (late embryogenesis abundant) proteins. Also responds to osmotic stress, ABA, dehydration and inhibits e.coli growth while overexpressed. COR47 and RAB18 double overexpressor plants are cold tolerant.	O.I.	C.G.	H.G.
9.4	99.1	14.0	At1g46768	841117	RAP2.1 (related to AP2 1)	encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family (RAP2.1). The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.9 and RAP2.10.	O.I.	C.G.	H.G.
9.2	99.1	44.2	At1g27760	839669	interferon-related developmental regulator family protein / IFRD protein family	Encodes a protein with similarity to human interferon-related developmental regulator (IFRD)that is involved in salt tolerance. Loss of function mutations are hypersensitive to salt stress and have reduced fertility. SAT32 is found in the cytoplasm but appears to translocate to the nucleus when plants are subject to salt stress.	O.I.	C.G.	H.G.
9.1	99.1	165.0	At5g20830	832206	SUS1 (SUCROSE SYNTHASE 1)	Encodes a protein with sucrose synthase activity (SUS1).	O.I.	C.G.	H.G.
8.9	99.0	82.4	At1g73480	843683	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:unknown;BOPMFVA	O.I.	C.G.	H.G.
8.8	99.0	67.0	At5g17050	831568	UGT78D2 (UDP-GLUCOSYL TRANSFERASE 78D2)	The At5g17050 encodes a anthocyanidin 3-O-glucosyltransferase which specifically glucosylates the 3-position of the flavonoid C-ring. Anthocyanidins such as cyanidin and pelargonidin as well as flavonols such as kaempferol and quercetin are accepted substrates.	O.I.	C.G.	H.G.
8.8	99.0	19.1	At5g41460	834147	fringe-related protein	F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:unknown;MPFO	O.I.	C.G.	H.G.
8.8	99.0	9.7	At2g35700	818139	ERF38 (ERF FAMILY PROTEIN 38)	encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. Thought to be involved in secondary cell wall metabolism.	O.I.	C.G.	H.G.
8.6	99.0	92.0	At3g04550	819611	unknown protein	F:unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;BPMO	O.I.	C.G.	H.G.

Back to the CoP portal site

Back to the KAGIANA project homepage

GSM ID	-
Assay name	E-MEXP-1344-raw-cel-1559561623
GSE experiment	-

Microarray experiments to specifically-expressed genes

GSM ID - Assay name E-MEXP-1344-raw-cel-1559561623 GSE experiment -

GSM ID -

Assay name E-MEXP-1344-raw-cel-1559561623

GSE experiment -