Microarray experiments to specifically-expressed genes

GSM ID -
Assay name E-MEXP-1344-raw-cel-1559561623
GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
359.1100.0269.6At3g43500823436unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
326.5100.048.1At5g43220--O.I.C.G.H.G.
326.0100.058.3At5g04640830341AGL99 (AGAMOUS-LIKE 99)F:transcription factor activity, DNA binding;P:N-terminal protein myristoylation, regulation of transcription, DNA-dependent;C:nucleus;PMFOBO.I.C.G.H.G.
315.5100.0218.9At2g38510818433MATE efflux protein-relatedF:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFAMO.I.C.G.H.G.
309.8100.0257.2At3g06230819797ATMKK8member of MAP Kinase KinaseO.I.C.G.H.G.
296.7100.0199.2At4g160203769881--O.I.C.G.H.G.
245.0100.0117.4At2g166803768265transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
205.7100.0138.0At3g42990823355unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
203.4100.073.8At3g57210824888-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
198.7100.043.0At2g19700816489unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
175.4100.096.5At5g36190833616-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
169.4100.035.5At1g23270838936unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBPFO.I.C.G.H.G.
126.899.941.4At1g370573767056transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
122.699.925.3At5g41490834150F-box family proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PFO.I.C.G.H.G.
117.299.952.1At5g50880835160unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
113.199.9128.0At5g29210833050unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknownO.I.C.G.H.G.
109.499.921.9At5g53690835450unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
106.999.932.1At5g41250834126exostosin family proteinF:catalytic activity;P:biological_process unknown;C:membrane;POMO.I.C.G.H.G.
98.299.919.0At1g02550837879invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
92.899.928.5At2g30380817588-F:molecular_function unknown;P:biological_process unknown;C:unknown;POMFO.I.C.G.H.G.
92.799.9215.6At1g09350837457AtGolS3 (Arabidopsis thaliana galactinol synthase 3)F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:cellular_component unknown;PMFVBOO.I.C.G.H.G.
79.999.916.1At1g13760837936unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
65.299.8154.5At1g16850838256unknown proteinF:molecular_function unknown;P:response to salt stress;C:endomembrane system;PO.I.C.G.H.G.
60.699.835.4At1g32660840160F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
59.099.8129.6At1g51090841532heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:cellular_component unknown;PBOMVFO.I.C.G.H.G.
56.299.810.1At4g27190828827disease resistance protein (NBS-LRR class), putativeF:protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:defense response, apoptosis;C:cellular_component unknown;PMBOFVAO.I.C.G.H.G.
53.999.814.9At3g16580820908F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:vacuole;PO.I.C.G.H.G.
48.499.811.2At5g04630830340CYP77A9member of CYP77AO.I.C.G.H.G.
46.399.815.0At2g41930818793ATP binding / kinase/ protein kinase/ protein serine/threonine kinaseF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPFBVAO.I.C.G.H.G.
32.299.770.3At1g53035841737unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
31.599.712.5At5g17030831566UGT78D3 (UDP-GLUCOSYL TRANSFERASE 78D3)F:quercetin 3-O-glucosyltransferase activity, flavonol 3-O-arabinosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVOFO.I.C.G.H.G.
31.299.712.0At2g132503767965transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
29.999.751.2At3g55760824742unknown proteinF:unknown;P:unknown;C:chloroplast stroma, chloroplast;POMFBO.I.C.G.H.G.
28.699.734.9At4g041403769795transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
28.199.7397.6At4g17090827419CT-BMY (CHLOROPLAST BETA-AMYLASE)Encodes a beta-amylase targeted to the chloroplast. Transgenic BMY8 RNAi lines fail to accumulate maltose during cold shock suggesting that maltose accumulation coincides with BMY8 expression. Apart from maltose, the sugar content of the RNAi lines were similar to wildtype (glucose and sucrose unaffected).O.I.C.G.H.G.
27.699.7334.4At4g14690827119ELIP2 (EARLY LIGHT-INDUCIBLE PROTEIN 2)Encodes an early light-induced protein. ELIPs are thought not to be directly involved in the synthesis and assembly of specific photosynthetic complexes, but rather affect the biogenesis of all chlorophyll-binding complexes. A study (PMID 17553115) has shown that the chlorophyll synthesis pathway was downregulated as a result of constitutive ELIP2 expression, leading to decreased chlorophyll availability for the assembly of pigment-binding proteins for photosynthesis.O.I.C.G.H.G.
27.699.749.0At3g17130820970invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:unknown;C:endomembrane system;PO.I.C.G.H.G.
24.199.623.3At2g15800816075transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
21.899.637.1At3g09540820111pectate lyase family proteinF:lyase activity, pectate lyase activity;P:N-terminal protein myristoylation;C:unknown;BPFOO.I.C.G.H.G.
21.599.66.8At5g54620835551ankyrin repeat family proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVAO.I.C.G.H.G.
20.199.6293.3At2g42530818853COR15B (COLD REGULATED 15B)F:unknown;P:response to cold;C:chloroplast, chloroplast stroma, chloroplast envelope;PBOMFO.I.C.G.H.G.
19.699.6421.9At2g28900817439ATOEP16-1 (OUTER PLASTID ENVELOPE PROTEIN 16-1)Encodes AtOEP16, a 16-KDa plastid outer membrane protein involved in plastid import of protochlorophyllide oxidoreductase A. Predominantly expressed in leaves and is also inducible by cold treatment.O.I.C.G.H.G.
19.199.65.0At1g422003767228transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
19.099.550.5At1g48100841228glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinF:polygalacturonase activity;P:carbohydrate metabolic process;C:unknown;FPBOMVAO.I.C.G.H.G.
18.899.5176.2At1g29395839815COR414-TM1encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment. Possibly targeted to thylakoid membrane.O.I.C.G.H.G.
18.699.541.6At4g15130827179catalytic/ choline-phosphate cytidylyltransferase/ nucleotidyltransferaseF:choline-phosphate cytidylyltransferase activity, catalytic activity, nucleotidyltransferase activity;P:response to cold, biosynthetic process;C:unknown;OMBFPAO.I.C.G.H.G.
18.199.58.9At3g329173769306transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
18.099.550.1At2g28550817403RAP2.7 (RELATED TO AP2.7)F:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent, vegetative to reproductive phase transition;C:nucleus;POBVO.I.C.G.H.G.
18.099.528.0At3g15030820732TCP4 (TCP family transcription factor 4)Arabidopsis thaliana TCP family transcription factor. Regulated by miR319. Involved in heterchronic regulation of leaf differentiation.O.I.C.G.H.G.
16.999.5129.9At1g47710841182serpin, putative / serine protease inhibitor, putativeF:serine-type endopeptidase inhibitor activity, cysteine-type endopeptidase inhibitor activity;P:biological_process unknown;C:apoplast;MVPBOAFO.I.C.G.H.G.
16.899.5352.4At5g52310835307LTI78 (LOW-TEMPERATURE-INDUCED 78)cold regulated gene, the 5' region of cor78 has cis-acting regulatory elements that can impart cold-regulated gene expressionO.I.C.G.H.G.
16.399.512.5At5g55680835662glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBMPFVAO.I.C.G.H.G.
16.399.510.6At1g65990842912type 2 peroxiredoxin-related / thiol specific antioxidant / mal allergen family proteinF:oxidoreductase activity, antioxidant activity;P:biological_process unknown;C:cellular_component unknown;OBPFMAO.I.C.G.H.G.
16.299.536.8At2g076833768000transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
16.099.539.7At3g14890820718phosphoesteraseF:DNA binding, catalytic activity, zinc ion binding;P:unknown;C:unknown;MOFPVBAO.I.C.G.H.G.
15.999.546.2At1g51610841586cation efflux family protein / metal tolerance protein, putative (MTPc4)F:cation transmembrane transporter activity, efflux transmembrane transporter activity;P:cation transport;C:membrane;BOMAPO.I.C.G.H.G.
15.899.5469.2At2g42540818854COR15A (COLD-REGULATED 15A)A cold-regulated gene whose product is targeted to the chloroplast and constitutive expression increases freezing tolerance in protoplasts in vitro and chloroplasts in vivo. NMR and x-ray diffraction studies suggest that COR15a alters the intrinsic curvature of the inner membrane of chloroplast envelope.O.I.C.G.H.G.
15.899.533.3At1g32860840180glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;POFO.I.C.G.H.G.
15.799.513.8At4g34650829617SQS2 (SQUALENE SYNTHASE 2)Encodes a protein with similarity to squalene synthase which catalyzes the first committed step in sterol biosynthesis. To date no experimental evidence exists that SQS2 functions as a squalene synthase and some experiments indicate it does not have this function.O.I.C.G.H.G.
14.699.418.0At3g58070824976GIS (GLABROUS INFLORESCENCE STEMS)Putative transcription factor, contains C2H2 domain, regulates aspects of shoot maturation in Arabidopsis thaliana. GIS loss-of-function mutations affect the epidermal differentiation of inflorescence organs, causing a premature decrease in trichome production on successive leaves, stem internodes, and branches. Overexpression has the opposite effect on trichome initiation and causes other heterochronic phenotypes, affecting flowering and juvenileľadult leaf transition and inducing the formation of rosette leaves on inflorescence stems.O.I.C.G.H.G.
14.699.411.8At2g27870817333transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
14.599.494.3At5g62210836342embryo-specific protein-relatedF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPOFVBAO.I.C.G.H.G.
14.299.432.2At1g16400838210CYP79F2Encodes cytochrome P450 CYP79F2.O.I.C.G.H.G.
13.499.481.6At4g27560828865glycosyltransferase family proteinF:transferase activity, transferring glycosyl groups;P:response to salt stress, N-terminal protein myristoylation;C:cellular_component unknown;PMBFOVO.I.C.G.H.G.
13.499.469.6At5g42570834264-F:molecular_function unknown;P:intracellular protein transport;C:endoplasmic reticulum, plasma membrane;MPOFABO.I.C.G.H.G.
13.099.4239.8At3g22840821855ELIP1 (EARLY LIGHT-INDUCABLE PROTEIN)Encodes an early light-inducible protein.O.I.C.G.H.G.
12.999.378.0At4g12030826811bile acid:sodium symporter family proteinF:transporter activity, bile acid:sodium symporter activity;P:sodium ion transport;C:membrane;OBMPAO.I.C.G.H.G.
12.799.3358.0At3g50970824261LTI30 (LOW TEMPERATURE-INDUCED 30)Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer freeze tolerance. Located in membranes. mRNA upregulated by water deprivation and abscisic acid.O.I.C.G.H.G.
12.799.3187.5At2g39800818566P5CS1 (DELTA1-PYRROLINE-5-CARBOXYLATE SYNTHASE 1)encodes a delta1-pyrroline-5-carboxylate synthase that catalyzes the rate-limiting enzyme in the biosynthesis of proline. Gene is expressed in reproductive organs and tissues under non-stress conditions but in the whole plant under water-limiting condition. Expression is also induced by abscisic acid and salt stress in a light-dependent manner. P5CS1 appears to be involved in salt stress responses related to proline accumulation, including protection from reactive oxidative species. P5CS1 appears to be present in different cells and/or different subcellular locations from P5CS2 in a tissue-dependent manner.O.I.C.G.H.G.
12.799.345.4At4g17550827470transporter-relatedF:sugar:hydrogen symporter activity;P:carbohydrate transport;C:plasma membrane;BMFOPAO.I.C.G.H.G.
12.799.344.9At5g27930832860protein phosphatase 2C, putative / PP2C, putativeF:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:cellular_component unknown;PMOFVBO.I.C.G.H.G.
12.199.317.6At4g37320829887CYP81D5member of CYP81DO.I.C.G.H.G.
12.199.36.6At2g24620816998S-locus glycoprotein family proteinF:unknown;P:recognition of pollen;C:cellular_component unknown;PO.I.C.G.H.G.
11.999.3111.7At4g38580830015ATFP6 (FARNESYLATED PROTEIN 6)putative farnesylated protein (At4g38580) mRNA, completeO.I.C.G.H.G.
11.599.384.0At5g57110835815ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8)Arabidopsis-autoinhibited Ca2+ -ATPase, isoform 8, contains all of the characteristic motifs of Ca2+ -transporting P-type Ca2+ -ATPases and is localized to the plasma membrane.O.I.C.G.H.G.
11.599.326.4At5g48250834878zinc finger (B-box type) family proteinF:transcription factor activity, zinc ion binding;P:unknown;C:plasma membrane;POMO.I.C.G.H.G.
11.499.340.0At5g50800835152nodulin MtN3 family proteinF:unknown;P:unknown;C:endomembrane system, integral to membrane, membrane;PMOO.I.C.G.H.G.
11.299.235.8At3g02250821223unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
11.099.2128.6At1g69870843323proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:response to salt stress, oligopeptide transport;C:plasma membrane, membrane;PBMFOO.I.C.G.H.G.
10.899.235.5At1g67850843111unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOO.I.C.G.H.G.
10.799.251.4At5g25110832582CIPK25 (CBL-INTERACTING PROTEIN KINASE 25)member of AtCIPKsO.I.C.G.H.G.
10.699.244.4At1g70900843429unknown proteinF:molecular_function unknown;P:unknown;C:unknown;PO.I.C.G.H.G.
10.599.235.1At1g78510844187SPS1 (solanesyl diphosphate synthase 1)Encodes a protein with solanesyl diphosphate synthase activity.O.I.C.G.H.G.
10.399.244.6At4g18390827568TCP family transcription factor, putativeF:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;POMFBO.I.C.G.H.G.
10.399.214.9At3g05660819733AtRLP33 (Receptor Like Protein 33)F:protein binding, kinase activity;P:signal transduction, defense response;C:chloroplast;PMOBFAVO.I.C.G.H.G.
10.199.244.8At2g35960818169NHL12Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression is not altered in response to cucumber mosaic virus or spermine.O.I.C.G.H.G.
9.999.158.9At5g59480836067haloacid dehalogenase-like hydrolase family proteinF:hydrolase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;OBPFAO.I.C.G.H.G.
9.899.1595.1At1g20450838633ERD10 (EARLY RESPONSIVE TO DEHYDRATION 10)Encodes a gene induced by low temperature and dehydration. Inhibits e.coli growth while overexpressed. Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer cold tolerance. Localized to membranes and cytoplasm.O.I.C.G.H.G.
9.899.1337.9At1g01470837071LEA14 (LATE EMBRYOGENESIS ABUNDANT 14)Encodes late-embryogenesis abundant protein whose mRNA levels are induced in response to wounding and light stress. Might be involved in protection against dessication.O.I.C.G.H.G.
9.699.186.3At3g24190822005ABC1 family proteinF:protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;OBMPFAVO.I.C.G.H.G.
9.499.1512.8At1g20440838632COR47 (COLD-REGULATED 47)Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. Cold regulated gene, amino acid sequence homology with Group II LEA (late embryogenesis abundant) proteins. Also responds to osmotic stress, ABA, dehydration and inhibits e.coli growth while overexpressed. COR47 and RAB18 double overexpressor plants are cold tolerant.O.I.C.G.H.G.
9.499.114.0At1g46768841117RAP2.1 (related to AP2 1)encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family (RAP2.1). The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.9 and RAP2.10.O.I.C.G.H.G.
9.299.144.2At1g27760839669interferon-related developmental regulator family protein / IFRD protein familyEncodes a protein with similarity to human interferon-related developmental regulator (IFRD)that is involved in salt tolerance. Loss of function mutations are hypersensitive to salt stress and have reduced fertility. SAT32 is found in the cytoplasm but appears to translocate to the nucleus when plants are subject to salt stress.O.I.C.G.H.G.
9.199.1165.0At5g20830832206SUS1 (SUCROSE SYNTHASE 1)Encodes a protein with sucrose synthase activity (SUS1).O.I.C.G.H.G.
8.999.082.4At1g73480843683hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:unknown;BOPMFVAO.I.C.G.H.G.
8.899.067.0At5g17050831568UGT78D2 (UDP-GLUCOSYL TRANSFERASE 78D2)The At5g17050 encodes a anthocyanidin 3-O-glucosyltransferase which specifically glucosylates the 3-position of the flavonoid C-ring. Anthocyanidins such as cyanidin and pelargonidin as well as flavonols such as kaempferol and quercetin are accepted substrates.O.I.C.G.H.G.
8.899.019.1At5g41460834147fringe-related proteinF:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:unknown;MPFOO.I.C.G.H.G.
8.899.09.7At2g35700818139ERF38 (ERF FAMILY PROTEIN 38)encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. Thought to be involved in secondary cell wall metabolism.O.I.C.G.H.G.
8.699.092.0At3g04550819611unknown proteinF:unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;BPMOO.I.C.G.H.G.



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