Microarray experiments to specifically-expressed genes

Assay name E-MEXP-1304-raw-cel-1530619577
GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
26.699.735.4At1g69160843247unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMVO.I.C.G.H.G.
22.899.644.4At1g73830843719BEE3 (BR ENHANCED EXPRESSION 3)F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFMBOO.I.C.G.H.G.
21.899.6110.4At3g04910819651WNK1 (WITH NO LYSINE (K) 1)Serine/threonine protein kinase, whose transcription is regulated by circadian rhythm.O.I.C.G.H.G.
20.299.631.5At3g01490821136protein kinase, putativeF:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
20.199.657.5At1g23080838916PIN7 (PIN-FORMED 7)Encodes a novel component of auxin efflux that is located apically in the basal cell and is involved during embryogenesis in setting up the apical-basal axis in the embryo. It is also involved in pattern specification during root development. In roots, it is expressed at lateral and basal membranes of provascular cells in the meristem and elongation zone, whereas in the columella cells it coincides with the PIN3 domain. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. PINs are directly involved of in catalyzing cellular auxin efflux.O.I.C.G.H.G.
19.099.568.4At3g05900819759neurofilament protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVO.I.C.G.H.G.
18.099.589.6At3g16850820938glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinF:polygalacturonase activity;P:carbohydrate metabolic process;C:vacuole, plant-type cell wall;PBFOMAO.I.C.G.H.G.
16.599.589.1At4g21750828263ATML1 (MERISTEM LAYER 1)Encodes a homeobox protein similar to GL2. It is expressed in both the apical and basal daughter cells of the zygote as well as their progeny. Expression is detected starting the two-celled stage of embryo development and is later restricted to the outermost, epidermal cell layer from its inception. Its promoter is highly modular with each region contributing to specific aspects of the gene's spatial and temporal expression. Double mutant analysis with PDF2, another L1-specific gene, suggests that their functions are partially redundant and the absence of both of the genes result in abnormal shoot development.O.I.C.G.H.G.
16.299.537.5At3g58120824981BZIP61Encodes a member of the BZIP family of transcription factors. Forms heterodimers with the related protein AtbZIP34. Binds to G-boxes in vitro and is localized to the nucleus in onion epidermal cells.O.I.C.G.H.G.
15.499.565.7At5g45820834622CIPK20 (CBL-INTERACTING PROTEIN KINASE 20)Encodes a CBL-interacting serine/threonine protein kinase comprised of an N-terminal kinase catalytic domain similar to SNF1/AMPK and a unique C-terminal regulatory domain.O.I.C.G.H.G.
15.199.428.0At1g68190843148zinc finger (B-box type) family proteinF:transcription factor activity, zinc ion binding;P:regulation of transcription;C:endomembrane system, intracellular;POMO.I.C.G.H.G.
14.999.415.2At5g07000830591ST2B (SULFOTRANSFERASE 2B)Encodes a member of the sulfotransferase family of proteins. Although it has 85% amino acid identity with ST2A (At5g07010), this protein is not able to transfer a sulfate group to 11- or 12-hydroxyjasmonic acid in vitro. It may be able to act on structurally related jasmonates.O.I.C.G.H.G.
13.899.421.9At1g70210843357CYCD1Encodes a D-type cyclin that physically interacts with CDC2A. Its expression is upregulated early during germination.O.I.C.G.H.G.
13.799.447.3At3g13980820612unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBVO.I.C.G.H.G.
13.699.451.5At4g27430828851CIP7 (COP1-INTERACTING PROTEIN 7)Positive regulator of light-regulated genes. Novel nuclear protein which requires light for its high level expression.O.I.C.G.H.G.
13.199.421.7At4g00950827948MEE47 (maternal effect embryo arrest 47)F:transcription factor activity;P:embryonic development ending in seed dormancy, regulation of transcription;C:cellular_component unknown;PMFOO.I.C.G.H.G.
12.499.3199.3At5g05690830453CPD (CONSTITUTIVE PHOTOMORPHOGENIC DWARF)Encodes a member of the CP90A family, a cytochrome P450 monooxygenase which converts 6-deoxocathasterone to 6-deoxoteasterone in the late C6 oxidation pathway and cathasterone to teasterone in the early C6 oxidation pathway of brassinolide biosynthesis. Expressed in cotyledons and leaves. Mutants display de-etiolation and derepression of light-induced genes in the dark, dwarfism, male sterility and activation of stress-regulated genes in the light. The expression of the gene using a CPD promoter:LUC fusion construct was shown to be under circadian and light control. Additionally, the circadian regulation was shown to be independent of BR levels as it remains unchanged in bri1 mutant lines. CPD appears to be involved in the autonomous pathway that regulates the transition to flowering, primarily through a BRI1-mediated signaling pathway that affects FLC expression levels, as uncovered by double mutant analyses.O.I.C.G.H.G.
12.499.312.9At4g09160826497SEC14 cytosolic factor family protein / phosphoglyceride transfer family proteinF:transporter activity;P:transport;C:chloroplast;MOFBPVAO.I.C.G.H.G.
12.199.3138.3At1g52190841649proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:membrane;PBMFOO.I.C.G.H.G.
12.199.3114.4At3g18050821330unknown proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PO.I.C.G.H.G.
12.199.349.7At4g00400828140GPAT8 (glycerol-3-phosphate acyltransferase 8)Involved in cutin assembly. Is functional redundant of GPAT4.O.I.C.G.H.G.
11.899.382.1At2g26910817232PDR4 (PLEIOTROPIC DRUG RESISTANCE 4)F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:membrane;BOMFAPVO.I.C.G.H.G.
11.899.342.5At2g32100817770OFP16 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16)F:unknown;P:biological_process unknown;C:cellular_component unknown;PBO.I.C.G.H.G.
11.799.347.2At2g43010818903PIF4 (phytochrome interacting factor 4)Isolated as a semidominant mutation defective in red -light responses. Encodes a nuclear localized bHLH protein that interacts with active PhyB protein. Negatively regulates phyB mediated red light responses. Involved in shade avoidance response. Protein abundance is negatively regulated by PhyB.O.I.C.G.H.G.
11.599.356.4At4g386908300251-phosphatidylinositol phosphodiesterase-relatedF:phospholipase C activity, phosphoric diester hydrolase activity;P:intracellular signaling cascade, N-terminal protein myristoylation, lipid metabolic process;C:cellular_component unknown;BFMPOO.I.C.G.H.G.
11.499.3136.4At5g16030831460unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBAO.I.C.G.H.G.
11.299.2223.0At5g11420831013-F:molecular_function unknown;P:biological_process unknown;C:cell wall, plant-type cell wall;PO.I.C.G.H.G.
11.099.2274.2At1g76490843982HMG1 (HYDROXY METHYLGLUTARYL COA REDUCTASE 1)Encodes a 3-hydroxy-3-methylglutaryl coenzyme A reductase, which is involved in melavonate biosynthesis and performs the first committed step in isoprenoid biosynthesis. Expression is activated in dark in leaf tissue but not controlled by light in the root (confineO.I.C.G.H.G.
10.899.2102.2At4g18710827605BIN2 (BRASSINOSTEROID-INSENSITIVE 2)ATSK (shaggy-like kinase) family member that encodes an AtSK protein involved in the cross-talk between auxin and brassinosteroid signaling pathways. BR-INSENSITIVE 2 mutant indicated that the BR-insensitive dwarf phenotype was due to a semidominant mutation in the BIN2. BIN2 is not allelic to BRI1. BIN2-mediated phosphorylation appears to promote BZR1 export from the nucleus.O.I.C.G.H.G.
10.899.289.4At3g28860822519ABCB19Belongs to the family of ATP-binding cassette (ABC) transporters. Also known as AtMDR11 and PGP19. Possibly regulates auxin-dependent responses by influencing basipetal auxin transport in the root. Acts upstream of phyA in regulating hypocotyl elongation and gravitropic response. Exerts nonredundant, partially overlapping functions with the ABC transporter encoded by AtPGP1.O.I.C.G.H.G.
10.899.229.3At2g46710819283rac GTPase activating protein, putativeF:Rac GTPase activator activity;P:signal transduction;C:intracellular;MOFPO.I.C.G.H.G.
10.799.253.8At5g01240831866amino acid permease, putativeF:transporter activity;P:amino acid transport;C:membrane;PFMOO.I.C.G.H.G.
10.799.233.5At1g18170838396immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family proteinF:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:chloroplast thylakoid membrane, chloroplast;BOMPFO.I.C.G.H.G.
10.699.2141.6At1g66150842930TMK1 (TRANSMEMBRANE KINASE 1)receptor-like transmembrane kinase I (TMK1)O.I.C.G.H.G.
10.699.266.9At2g18300816346basic helix-loop-helix (bHLH) family proteinF:transcription factor activity;P:response to cytokinin stimulus, regulation of transcription;C:nucleus;PMFOO.I.C.G.H.G.
10.499.25.8At4g26540828760kinaseF:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
10.399.246.7At2g35800818153mitochondrial substrate carrier family proteinF:binding, calcium ion binding;P:transport;C:mitochondrial inner membrane, chloroplast envelope;MFPOO.I.C.G.H.G.
10.399.219.4At3g56750824842unknown proteinF:molecular_function unknown;P:biological_process unknown;C:Golgi apparatus;POO.I.C.G.H.G.
10.199.2123.7At3g45780823721PHOT1 (PHOTOTROPIN 1)Blue-light photoreceptor. Contains a light activated serine-threonine kinase domain and LOV1 and LOV2 repeats. Mutants are defective in blue-light response. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 mediate blue light-dependent activation of the plasma membrane H+-ATPase in guard cell protoplasts. PHOT1 undergoes blue-light-dependent autophosphorylation. At least eight phosphorylation sites have been identified in PHOT1. Phosphorylation of serine851 in the activation loop of PHOT1 appears to be required for stomatal opening, chloroplast accumulation, leaf flattening, and phototropism, and phosphorylation of serine849 may also contribute to the regulation of these responses. Phosphorylation-dependent binding of 14-3-3 proteins to the Hinge1 region of PHOT1 appears to require serine350 and serine376.O.I.C.G.H.G., preferentially expressed in endodermal and phloem cells of primary roots and in the vascular tissues of leaves, stems, and flowers.O.I.C.G.H.G. (LIPOAMIDE DEHYDROGENASE 1)encodes a plastid lipoamide dehydrogenase, subunit of the pyruvate dehydrogenase complex which provides acetyl-CoA for de novo fatty acid biosynthesis. The gene is highly expressed in developing seeds.O.I.C.G.H.G.
9.999.1134.3At2g38120818390AUX1 (AUXIN RESISTANT 1)Encodes an auxin influx transporter. AUX1 resides at the apical plasma membrane of protophloem cells and at highly dynamic subpopulations of Golgi apparatus and endosomes in all cell types. AUX1 action in the lateral root cap and/or epidermal cells influences lateral root initiation and positioning.O.I.C.G.H.G.
9.999.134.3At5g54630835552zinc finger protein-relatedF:transcription factor activity;P:regulation of transcription;C:intracellular;PFMOO.I.C.G.H.G.
9.899.112.0At3g42800823322unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;OMBFPO.I.C.G.H.G.
9.799.175.7At2g01420814670PIN4 (PIN-FORMED 4)Encodes a putative auxin efflux carrier that is localized in developing and mature root meristems. It is involved in the maintenance of embryonic auxin gradients. A role for AtPIN4 in generating a sink for auxin below the quiescent center of the root meristem that is essential for auxin distribution and patterning is proposed. In the root, PIN4 is detected around the quiescent center and cells surrounding it, and localizes basally in provascular cells. PIN4 expression is upregulated in brassinosteroid-insensitive mutant (PMID 16141452).O.I.C.G.H.G.
9.799.133.8At2g22720816802-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOFBPVAO.I.C.G.H.G.
9.699.137.3At1g18620838443unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBVO.I.C.G.H.G.
9.699.136.1At1g48480841269RKL1Arabidopsis thaliana receptor-like protein kinase (RKL1) geneO.I.C.G.H.G.
9.599.150.3At4g30993829225unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
9.599.124.4At1g80000844340-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVAO.I.C.G.H.G.
9.499.167.3At3g62660825440GATL7 (Galacturonosyltransferase-like 7)Encodes a protein with putative galacturonosyltransferase activity.O.I.C.G.H.G.
9.399.180.9At2g15090815998KCS8 (3-KETOACYL-COA SYNTHASE 8)Encodes KCS8, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).O.I.C.G.H.G.
9.399.115.7At3g60390825210HAT3 (HOMEOBOX-LEUCINE ZIPPER PROTEIN 3)Encodes homeobox protein HAT3.O.I.C.G.H.G. helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFO.I.C.G.H.G. a kinesin-related protein.O.I.C.G.H.G. protein-relatedF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOFBPVAO.I.C.G.H.G.
9.199.1103.0At1g68560843185XYL1 (ALPHA-XYLOSIDASE 1)Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 3 of glycoside hydrolases.O.I.C.G.H.G.
9.099.1133.7At1g22530838859PATL2 (PATELLIN 2)F:transporter activity;P:transport;C:plasma membrane, chloroplast;MOBFPVAO.I.C.G.H.G.
8.999.075.2At5g44680834497methyladenine glycosylase family proteinF:DNA-3-methyladenine glycosylase I activity, catalytic activity;P:DNA repair, base-excision repair;C:unknown;BOPAMFO.I.C.G.H.G.
8.999.061.6At4g24800828582MA3 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFO.I.C.G.H.G.
8.999.056.3At1g61900842486unknown proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PO.I.C.G.H.G.
8.999.046.5At1g33240840218AT-GTL1 (GT2-LIKE 1)Encodes a plant transcriptional activator that contains two separate, but similar, trihelix DNA-binding domains, similar to GT-2. Gene is expressed in all aerial parts of the plant, with higher level of expression in siliques. At-GTL2 was thought to be a duplicated copy of this gene but is likely to be a cloning artefact, the result of a chimeric clone.O.I.C.G.H.G.
8.999.04.3At2g42380818839bZIP transcription factor family proteinEncodes a member of the BZIP family of transcription factors. Forms heterodimers with the related protein AtbZIP61. Binds to G-boxes in vitro and is localized to the nucleus in onion epidermal cells.O.I.C.G.H.G.
8.899.023.9At2g46180819225GC4 (golgin candidate 4)This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC4 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (169 aa) portion of the protein.O.I.C.G.H.G.
8.799.024.2At1g78260844161RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBAO.I.C.G.H.G.
8.699.058.0At1g14280837989PKS2 (PHYTOCHROME KINASE SUBSTRATE 2)Encodes phytochrome kinase substrate 2. PKS proteins are critical for hypocotyl phototropism.O.I.C.G.H.G.

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