CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID -

Assay name E-MEXP-1304-raw-cel-1530619577

GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
26.6 99.7 35.4 At1g69160 843247 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMV O.I. C.G. H.G.
22.8 99.6 44.4 At1g73830 843719 BEE3 (BR ENHANCED EXPRESSION 3) F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFMBO O.I. C.G. H.G.
21.8 99.6 110.4 At3g04910 819651 WNK1 (WITH NO LYSINE (K) 1) Serine/threonine protein kinase, whose transcription is regulated by circadian rhythm. O.I. C.G. H.G.
20.2 99.6 31.5 At3g01490 821136 protein kinase, putative F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
20.1 99.6 57.5 At1g23080 838916 PIN7 (PIN-FORMED 7) Encodes a novel component of auxin efflux that is located apically in the basal cell and is involved during embryogenesis in setting up the apical-basal axis in the embryo. It is also involved in pattern specification during root development. In roots, it is expressed at lateral and basal membranes of provascular cells in the meristem and elongation zone, whereas in the columella cells it coincides with the PIN3 domain. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. PINs are directly involved of in catalyzing cellular auxin efflux. O.I. C.G. H.G.
19.0 99.5 68.4 At3g05900 819759 neurofilament protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV O.I. C.G. H.G.
18.0 99.5 89.6 At3g16850 820938 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:vacuole, plant-type cell wall;PBFOMA O.I. C.G. H.G.
16.5 99.5 89.1 At4g21750 828263 ATML1 (MERISTEM LAYER 1) Encodes a homeobox protein similar to GL2. It is expressed in both the apical and basal daughter cells of the zygote as well as their progeny. Expression is detected starting the two-celled stage of embryo development and is later restricted to the outermost, epidermal cell layer from its inception. Its promoter is highly modular with each region contributing to specific aspects of the gene's spatial and temporal expression. Double mutant analysis with PDF2, another L1-specific gene, suggests that their functions are partially redundant and the absence of both of the genes result in abnormal shoot development. O.I. C.G. H.G.
16.2 99.5 37.5 At3g58120 824981 BZIP61 Encodes a member of the BZIP family of transcription factors. Forms heterodimers with the related protein AtbZIP34. Binds to G-boxes in vitro and is localized to the nucleus in onion epidermal cells. O.I. C.G. H.G.
15.4 99.5 65.7 At5g45820 834622 CIPK20 (CBL-INTERACTING PROTEIN KINASE 20) Encodes a CBL-interacting serine/threonine protein kinase comprised of an N-terminal kinase catalytic domain similar to SNF1/AMPK and a unique C-terminal regulatory domain. O.I. C.G. H.G.
15.1 99.4 28.0 At1g68190 843148 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:endomembrane system, intracellular;POM O.I. C.G. H.G.
14.9 99.4 15.2 At5g07000 830591 ST2B (SULFOTRANSFERASE 2B) Encodes a member of the sulfotransferase family of proteins. Although it has 85% amino acid identity with ST2A (At5g07010), this protein is not able to transfer a sulfate group to 11- or 12-hydroxyjasmonic acid in vitro. It may be able to act on structurally related jasmonates. O.I. C.G. H.G.
13.8 99.4 21.9 At1g70210 843357 CYCD1 Encodes a D-type cyclin that physically interacts with CDC2A. Its expression is upregulated early during germination. O.I. C.G. H.G.
13.7 99.4 47.3 At3g13980 820612 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBV O.I. C.G. H.G.
13.6 99.4 51.5 At4g27430 828851 CIP7 (COP1-INTERACTING PROTEIN 7) Positive regulator of light-regulated genes. Novel nuclear protein which requires light for its high level expression. O.I. C.G. H.G.
13.1 99.4 21.7 At4g00950 827948 MEE47 (maternal effect embryo arrest 47) F:transcription factor activity;P:embryonic development ending in seed dormancy, regulation of transcription;C:cellular_component unknown;PMFO O.I. C.G. H.G.
12.4 99.3 199.3 At5g05690 830453 CPD (CONSTITUTIVE PHOTOMORPHOGENIC DWARF) Encodes a member of the CP90A family, a cytochrome P450 monooxygenase which converts 6-deoxocathasterone to 6-deoxoteasterone in the late C6 oxidation pathway and cathasterone to teasterone in the early C6 oxidation pathway of brassinolide biosynthesis. Expressed in cotyledons and leaves. Mutants display de-etiolation and derepression of light-induced genes in the dark, dwarfism, male sterility and activation of stress-regulated genes in the light. The expression of the gene using a CPD promoter:LUC fusion construct was shown to be under circadian and light control. Additionally, the circadian regulation was shown to be independent of BR levels as it remains unchanged in bri1 mutant lines. CPD appears to be involved in the autonomous pathway that regulates the transition to flowering, primarily through a BRI1-mediated signaling pathway that affects FLC expression levels, as uncovered by double mutant analyses. O.I. C.G. H.G.
12.4 99.3 12.9 At4g09160 826497 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein F:transporter activity;P:transport;C:chloroplast;MOFBPVA O.I. C.G. H.G.
12.1 99.3 138.3 At1g52190 841649 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;PBMFO O.I. C.G. H.G.
12.1 99.3 114.4 At3g18050 821330 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P O.I. C.G. H.G.
12.1 99.3 49.7 At4g00400 828140 GPAT8 (glycerol-3-phosphate acyltransferase 8) Involved in cutin assembly. Is functional redundant of GPAT4. O.I. C.G. H.G.
11.8 99.3 82.1 At2g26910 817232 PDR4 (PLEIOTROPIC DRUG RESISTANCE 4) F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:membrane;BOMFAPV O.I. C.G. H.G.
11.8 99.3 42.5 At2g32100 817770 OFP16 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16) F:unknown;P:biological_process unknown;C:cellular_component unknown;PB O.I. C.G. H.G.
11.7 99.3 47.2 At2g43010 818903 PIF4 (phytochrome interacting factor 4) Isolated as a semidominant mutation defective in red -light responses. Encodes a nuclear localized bHLH protein that interacts with active PhyB protein. Negatively regulates phyB mediated red light responses. Involved in shade avoidance response. Protein abundance is negatively regulated by PhyB. O.I. C.G. H.G.
11.5 99.3 56.4 At4g38690 830025 1-phosphatidylinositol phosphodiesterase-related F:phospholipase C activity, phosphoric diester hydrolase activity;P:intracellular signaling cascade, N-terminal protein myristoylation, lipid metabolic process;C:cellular_component unknown;BFMPO O.I. C.G. H.G.
11.4 99.3 136.4 At5g16030 831460 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBA O.I. C.G. H.G.
11.2 99.2 223.0 At5g11420 831013 - F:molecular_function unknown;P:biological_process unknown;C:cell wall, plant-type cell wall;P O.I. C.G. H.G.
11.0 99.2 274.2 At1g76490 843982 HMG1 (HYDROXY METHYLGLUTARYL COA REDUCTASE 1) Encodes a 3-hydroxy-3-methylglutaryl coenzyme A reductase, which is involved in melavonate biosynthesis and performs the first committed step in isoprenoid biosynthesis. Expression is activated in dark in leaf tissue but not controlled by light in the root (confine O.I. C.G. H.G.
10.8 99.2 102.2 At4g18710 827605 BIN2 (BRASSINOSTEROID-INSENSITIVE 2) ATSK (shaggy-like kinase) family member that encodes an AtSK protein involved in the cross-talk between auxin and brassinosteroid signaling pathways. BR-INSENSITIVE 2 mutant indicated that the BR-insensitive dwarf phenotype was due to a semidominant mutation in the BIN2. BIN2 is not allelic to BRI1. BIN2-mediated phosphorylation appears to promote BZR1 export from the nucleus. O.I. C.G. H.G.
10.8 99.2 89.4 At3g28860 822519 ABCB19 Belongs to the family of ATP-binding cassette (ABC) transporters. Also known as AtMDR11 and PGP19. Possibly regulates auxin-dependent responses by influencing basipetal auxin transport in the root. Acts upstream of phyA in regulating hypocotyl elongation and gravitropic response. Exerts nonredundant, partially overlapping functions with the ABC transporter encoded by AtPGP1. O.I. C.G. H.G.
10.8 99.2 29.3 At2g46710 819283 rac GTPase activating protein, putative F:Rac GTPase activator activity;P:signal transduction;C:intracellular;MOFP O.I. C.G. H.G.
10.7 99.2 53.8 At5g01240 831866 amino acid permease, putative F:transporter activity;P:amino acid transport;C:membrane;PFMO O.I. C.G. H.G.
10.7 99.2 33.5 At1g18170 838396 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:chloroplast thylakoid membrane, chloroplast;BOMPF O.I. C.G. H.G.
10.6 99.2 141.6 At1g66150 842930 TMK1 (TRANSMEMBRANE KINASE 1) receptor-like transmembrane kinase I (TMK1) O.I. C.G. H.G.
10.6 99.2 66.9 At2g18300 816346 basic helix-loop-helix (bHLH) family protein F:transcription factor activity;P:response to cytokinin stimulus, regulation of transcription;C:nucleus;PMFO O.I. C.G. H.G.
10.4 99.2 5.8 At4g26540 828760 kinase F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
10.3 99.2 46.7 At2g35800 818153 mitochondrial substrate carrier family protein F:binding, calcium ion binding;P:transport;C:mitochondrial inner membrane, chloroplast envelope;MFPO O.I. C.G. H.G.
10.3 99.2 19.4 At3g56750 824842 unknown protein F:molecular_function unknown;P:biological_process unknown;C:Golgi apparatus;PO O.I. C.G. H.G.
10.1 99.2 123.7 At3g45780 823721 PHOT1 (PHOTOTROPIN 1) Blue-light photoreceptor. Contains a light activated serine-threonine kinase domain and LOV1 and LOV2 repeats. Mutants are defective in blue-light response. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 mediate blue light-dependent activation of the plasma membrane H+-ATPase in guard cell protoplasts. PHOT1 undergoes blue-light-dependent autophosphorylation. At least eight phosphorylation sites have been identified in PHOT1. Phosphorylation of serine851 in the activation loop of PHOT1 appears to be required for stomatal opening, chloroplast accumulation, leaf flattening, and phototropism, and phosphorylation of serine849 may also contribute to the regulation of these responses. Phosphorylation-dependent binding of 14-3-3 proteins to the Hinge1 region of PHOT1 appears to require serine350 and serine376. O.I. C.G. H.G.
10.0 99.2 57.9 At5g23860 832451 TUB8 beta-tubulin, preferentially expressed in endodermal and phloem cells of primary roots and in the vascular tissues of leaves, stems, and flowers. O.I. C.G. H.G.
10.0 99.2 50.7 At3g16950 820951 LPD1 (LIPOAMIDE DEHYDROGENASE 1) encodes a plastid lipoamide dehydrogenase, subunit of the pyruvate dehydrogenase complex which provides acetyl-CoA for de novo fatty acid biosynthesis. The gene is highly expressed in developing seeds. O.I. C.G. H.G.
9.9 99.1 134.3 At2g38120 818390 AUX1 (AUXIN RESISTANT 1) Encodes an auxin influx transporter. AUX1 resides at the apical plasma membrane of protophloem cells and at highly dynamic subpopulations of Golgi apparatus and endosomes in all cell types. AUX1 action in the lateral root cap and/or epidermal cells influences lateral root initiation and positioning. O.I. C.G. H.G.
9.9 99.1 34.3 At5g54630 835552 zinc finger protein-related F:transcription factor activity;P:regulation of transcription;C:intracellular;PFMO O.I. C.G. H.G.
9.8 99.1 12.0 At3g42800 823322 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OMBFP O.I. C.G. H.G.
9.7 99.1 75.7 At2g01420 814670 PIN4 (PIN-FORMED 4) Encodes a putative auxin efflux carrier that is localized in developing and mature root meristems. It is involved in the maintenance of embryonic auxin gradients. A role for AtPIN4 in generating a sink for auxin below the quiescent center of the root meristem that is essential for auxin distribution and patterning is proposed. In the root, PIN4 is detected around the quiescent center and cells surrounding it, and localizes basally in provascular cells. PIN4 expression is upregulated in brassinosteroid-insensitive mutant (PMID 16141452). O.I. C.G. H.G.
9.7 99.1 33.8 At2g22720 816802 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOFBPVA O.I. C.G. H.G.
9.6 99.1 37.3 At1g18620 838443 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBV O.I. C.G. H.G.
9.6 99.1 36.1 At1g48480 841269 RKL1 Arabidopsis thaliana receptor-like protein kinase (RKL1) gene O.I. C.G. H.G.
9.5 99.1 50.3 At4g30993 829225 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
9.5 99.1 24.4 At1g80000 844340 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVA O.I. C.G. H.G.
9.4 99.1 67.3 At3g62660 825440 GATL7 (Galacturonosyltransferase-like 7) Encodes a protein with putative galacturonosyltransferase activity. O.I. C.G. H.G.
9.3 99.1 80.9 At2g15090 815998 KCS8 (3-KETOACYL-COA SYNTHASE 8) Encodes KCS8, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). O.I. C.G. H.G.
9.3 99.1 15.7 At3g60390 825210 HAT3 (HOMEOBOX-LEUCINE ZIPPER PROTEIN 3) Encodes homeobox protein HAT3. O.I. C.G. H.G.
9.2 99.1 20.3 At2g42300 818831 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMF O.I. C.G. H.G.
9.2 99.1 17.5 At3g50240 824186 KICP-02 Encodes a kinesin-related protein. O.I. C.G. H.G.
9.2 99.1 13.1 At1g72410 843573 COP1-interacting protein-related F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOFBPVA O.I. C.G. H.G.
9.1 99.1 103.0 At1g68560 843185 XYL1 (ALPHA-XYLOSIDASE 1) Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 3 of glycoside hydrolases. O.I. C.G. H.G.
9.0 99.1 133.7 At1g22530 838859 PATL2 (PATELLIN 2) F:transporter activity;P:transport;C:plasma membrane, chloroplast;MOBFPVA O.I. C.G. H.G.
8.9 99.0 75.2 At5g44680 834497 methyladenine glycosylase family protein F:DNA-3-methyladenine glycosylase I activity, catalytic activity;P:DNA repair, base-excision repair;C:unknown;BOPAMF O.I. C.G. H.G.
8.9 99.0 61.6 At4g24800 828582 MA3 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF O.I. C.G. H.G.
8.9 99.0 56.3 At1g61900 842486 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;P O.I. C.G. H.G.
8.9 99.0 46.5 At1g33240 840218 AT-GTL1 (GT2-LIKE 1) Encodes a plant transcriptional activator that contains two separate, but similar, trihelix DNA-binding domains, similar to GT-2. Gene is expressed in all aerial parts of the plant, with higher level of expression in siliques. At-GTL2 was thought to be a duplicated copy of this gene but is likely to be a cloning artefact, the result of a chimeric clone. O.I. C.G. H.G.
8.9 99.0 4.3 At2g42380 818839 bZIP transcription factor family protein Encodes a member of the BZIP family of transcription factors. Forms heterodimers with the related protein AtbZIP61. Binds to G-boxes in vitro and is localized to the nucleus in onion epidermal cells. O.I. C.G. H.G.
8.8 99.0 23.9 At2g46180 819225 GC4 (golgin candidate 4) This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC4 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (169 aa) portion of the protein. O.I. C.G. H.G.
8.7 99.0 24.2 At1g78260 844161 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBA O.I. C.G. H.G.
8.6 99.0 58.0 At1g14280 837989 PKS2 (PHYTOCHROME KINASE SUBSTRATE 2) Encodes phytochrome kinase substrate 2. PKS proteins are critical for hypocotyl phototropism. O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
26.6	99.7	35.4	At1g69160	843247	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMV	O.I.	C.G.	H.G.
22.8	99.6	44.4	At1g73830	843719	BEE3 (BR ENHANCED EXPRESSION 3)	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFMBO	O.I.	C.G.	H.G.
21.8	99.6	110.4	At3g04910	819651	WNK1 (WITH NO LYSINE (K) 1)	Serine/threonine protein kinase, whose transcription is regulated by circadian rhythm.	O.I.	C.G.	H.G.
20.2	99.6	31.5	At3g01490	821136	protein kinase, putative	F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
20.1	99.6	57.5	At1g23080	838916	PIN7 (PIN-FORMED 7)	Encodes a novel component of auxin efflux that is located apically in the basal cell and is involved during embryogenesis in setting up the apical-basal axis in the embryo. It is also involved in pattern specification during root development. In roots, it is expressed at lateral and basal membranes of provascular cells in the meristem and elongation zone, whereas in the columella cells it coincides with the PIN3 domain. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. PINs are directly involved of in catalyzing cellular auxin efflux.	O.I.	C.G.	H.G.
19.0	99.5	68.4	At3g05900	819759	neurofilament protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV	O.I.	C.G.	H.G.
18.0	99.5	89.6	At3g16850	820938	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	F:polygalacturonase activity;P:carbohydrate metabolic process;C:vacuole, plant-type cell wall;PBFOMA	O.I.	C.G.	H.G.
16.5	99.5	89.1	At4g21750	828263	ATML1 (MERISTEM LAYER 1)	Encodes a homeobox protein similar to GL2. It is expressed in both the apical and basal daughter cells of the zygote as well as their progeny. Expression is detected starting the two-celled stage of embryo development and is later restricted to the outermost, epidermal cell layer from its inception. Its promoter is highly modular with each region contributing to specific aspects of the gene's spatial and temporal expression. Double mutant analysis with PDF2, another L1-specific gene, suggests that their functions are partially redundant and the absence of both of the genes result in abnormal shoot development.	O.I.	C.G.	H.G.
16.2	99.5	37.5	At3g58120	824981	BZIP61	Encodes a member of the BZIP family of transcription factors. Forms heterodimers with the related protein AtbZIP34. Binds to G-boxes in vitro and is localized to the nucleus in onion epidermal cells.	O.I.	C.G.	H.G.
15.4	99.5	65.7	At5g45820	834622	CIPK20 (CBL-INTERACTING PROTEIN KINASE 20)	Encodes a CBL-interacting serine/threonine protein kinase comprised of an N-terminal kinase catalytic domain similar to SNF1/AMPK and a unique C-terminal regulatory domain.	O.I.	C.G.	H.G.
15.1	99.4	28.0	At1g68190	843148	zinc finger (B-box type) family protein	F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:endomembrane system, intracellular;POM	O.I.	C.G.	H.G.
14.9	99.4	15.2	At5g07000	830591	ST2B (SULFOTRANSFERASE 2B)	Encodes a member of the sulfotransferase family of proteins. Although it has 85% amino acid identity with ST2A (At5g07010), this protein is not able to transfer a sulfate group to 11- or 12-hydroxyjasmonic acid in vitro. It may be able to act on structurally related jasmonates.	O.I.	C.G.	H.G.
13.8	99.4	21.9	At1g70210	843357	CYCD1	Encodes a D-type cyclin that physically interacts with CDC2A. Its expression is upregulated early during germination.	O.I.	C.G.	H.G.
13.7	99.4	47.3	At3g13980	820612	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBV	O.I.	C.G.	H.G.
13.6	99.4	51.5	At4g27430	828851	CIP7 (COP1-INTERACTING PROTEIN 7)	Positive regulator of light-regulated genes. Novel nuclear protein which requires light for its high level expression.	O.I.	C.G.	H.G.
13.1	99.4	21.7	At4g00950	827948	MEE47 (maternal effect embryo arrest 47)	F:transcription factor activity;P:embryonic development ending in seed dormancy, regulation of transcription;C:cellular_component unknown;PMFO	O.I.	C.G.	H.G.
12.4	99.3	199.3	At5g05690	830453	CPD (CONSTITUTIVE PHOTOMORPHOGENIC DWARF)	Encodes a member of the CP90A family, a cytochrome P450 monooxygenase which converts 6-deoxocathasterone to 6-deoxoteasterone in the late C6 oxidation pathway and cathasterone to teasterone in the early C6 oxidation pathway of brassinolide biosynthesis. Expressed in cotyledons and leaves. Mutants display de-etiolation and derepression of light-induced genes in the dark, dwarfism, male sterility and activation of stress-regulated genes in the light. The expression of the gene using a CPD promoter:LUC fusion construct was shown to be under circadian and light control. Additionally, the circadian regulation was shown to be independent of BR levels as it remains unchanged in bri1 mutant lines. CPD appears to be involved in the autonomous pathway that regulates the transition to flowering, primarily through a BRI1-mediated signaling pathway that affects FLC expression levels, as uncovered by double mutant analyses.	O.I.	C.G.	H.G.
12.4	99.3	12.9	At4g09160	826497	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein	F:transporter activity;P:transport;C:chloroplast;MOFBPVA	O.I.	C.G.	H.G.
12.1	99.3	138.3	At1g52190	841649	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:membrane;PBMFO	O.I.	C.G.	H.G.
12.1	99.3	114.4	At3g18050	821330	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
12.1	99.3	49.7	At4g00400	828140	GPAT8 (glycerol-3-phosphate acyltransferase 8)	Involved in cutin assembly. Is functional redundant of GPAT4.	O.I.	C.G.	H.G.
11.8	99.3	82.1	At2g26910	817232	PDR4 (PLEIOTROPIC DRUG RESISTANCE 4)	F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:membrane;BOMFAPV	O.I.	C.G.	H.G.
11.8	99.3	42.5	At2g32100	817770	OFP16 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16)	F:unknown;P:biological_process unknown;C:cellular_component unknown;PB	O.I.	C.G.	H.G.
11.7	99.3	47.2	At2g43010	818903	PIF4 (phytochrome interacting factor 4)	Isolated as a semidominant mutation defective in red -light responses. Encodes a nuclear localized bHLH protein that interacts with active PhyB protein. Negatively regulates phyB mediated red light responses. Involved in shade avoidance response. Protein abundance is negatively regulated by PhyB.	O.I.	C.G.	H.G.
11.5	99.3	56.4	At4g38690	830025	1-phosphatidylinositol phosphodiesterase-related	F:phospholipase C activity, phosphoric diester hydrolase activity;P:intracellular signaling cascade, N-terminal protein myristoylation, lipid metabolic process;C:cellular_component unknown;BFMPO	O.I.	C.G.	H.G.
11.4	99.3	136.4	At5g16030	831460	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBA	O.I.	C.G.	H.G.
11.2	99.2	223.0	At5g11420	831013	-	F:molecular_function unknown;P:biological_process unknown;C:cell wall, plant-type cell wall;P	O.I.	C.G.	H.G.
11.0	99.2	274.2	At1g76490	843982	HMG1 (HYDROXY METHYLGLUTARYL COA REDUCTASE 1)	Encodes a 3-hydroxy-3-methylglutaryl coenzyme A reductase, which is involved in melavonate biosynthesis and performs the first committed step in isoprenoid biosynthesis. Expression is activated in dark in leaf tissue but not controlled by light in the root (confine	O.I.	C.G.	H.G.
10.8	99.2	102.2	At4g18710	827605	BIN2 (BRASSINOSTEROID-INSENSITIVE 2)	ATSK (shaggy-like kinase) family member that encodes an AtSK protein involved in the cross-talk between auxin and brassinosteroid signaling pathways. BR-INSENSITIVE 2 mutant indicated that the BR-insensitive dwarf phenotype was due to a semidominant mutation in the BIN2. BIN2 is not allelic to BRI1. BIN2-mediated phosphorylation appears to promote BZR1 export from the nucleus.	O.I.	C.G.	H.G.
10.8	99.2	89.4	At3g28860	822519	ABCB19	Belongs to the family of ATP-binding cassette (ABC) transporters. Also known as AtMDR11 and PGP19. Possibly regulates auxin-dependent responses by influencing basipetal auxin transport in the root. Acts upstream of phyA in regulating hypocotyl elongation and gravitropic response. Exerts nonredundant, partially overlapping functions with the ABC transporter encoded by AtPGP1.	O.I.	C.G.	H.G.
10.8	99.2	29.3	At2g46710	819283	rac GTPase activating protein, putative	F:Rac GTPase activator activity;P:signal transduction;C:intracellular;MOFP	O.I.	C.G.	H.G.
10.7	99.2	53.8	At5g01240	831866	amino acid permease, putative	F:transporter activity;P:amino acid transport;C:membrane;PFMO	O.I.	C.G.	H.G.
10.7	99.2	33.5	At1g18170	838396	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:chloroplast thylakoid membrane, chloroplast;BOMPF	O.I.	C.G.	H.G.
10.6	99.2	141.6	At1g66150	842930	TMK1 (TRANSMEMBRANE KINASE 1)	receptor-like transmembrane kinase I (TMK1)	O.I.	C.G.	H.G.
10.6	99.2	66.9	At2g18300	816346	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity;P:response to cytokinin stimulus, regulation of transcription;C:nucleus;PMFO	O.I.	C.G.	H.G.
10.4	99.2	5.8	At4g26540	828760	kinase	F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
10.3	99.2	46.7	At2g35800	818153	mitochondrial substrate carrier family protein	F:binding, calcium ion binding;P:transport;C:mitochondrial inner membrane, chloroplast envelope;MFPO	O.I.	C.G.	H.G.
10.3	99.2	19.4	At3g56750	824842	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:Golgi apparatus;PO	O.I.	C.G.	H.G.
10.1	99.2	123.7	At3g45780	823721	PHOT1 (PHOTOTROPIN 1)	Blue-light photoreceptor. Contains a light activated serine-threonine kinase domain and LOV1 and LOV2 repeats. Mutants are defective in blue-light response. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 mediate blue light-dependent activation of the plasma membrane H+-ATPase in guard cell protoplasts. PHOT1 undergoes blue-light-dependent autophosphorylation. At least eight phosphorylation sites have been identified in PHOT1. Phosphorylation of serine851 in the activation loop of PHOT1 appears to be required for stomatal opening, chloroplast accumulation, leaf flattening, and phototropism, and phosphorylation of serine849 may also contribute to the regulation of these responses. Phosphorylation-dependent binding of 14-3-3 proteins to the Hinge1 region of PHOT1 appears to require serine350 and serine376.	O.I.	C.G.	H.G.
10.0	99.2	57.9	At5g23860	832451	TUB8	beta-tubulin, preferentially expressed in endodermal and phloem cells of primary roots and in the vascular tissues of leaves, stems, and flowers.	O.I.	C.G.	H.G.
10.0	99.2	50.7	At3g16950	820951	LPD1 (LIPOAMIDE DEHYDROGENASE 1)	encodes a plastid lipoamide dehydrogenase, subunit of the pyruvate dehydrogenase complex which provides acetyl-CoA for de novo fatty acid biosynthesis. The gene is highly expressed in developing seeds.	O.I.	C.G.	H.G.
9.9	99.1	134.3	At2g38120	818390	AUX1 (AUXIN RESISTANT 1)	Encodes an auxin influx transporter. AUX1 resides at the apical plasma membrane of protophloem cells and at highly dynamic subpopulations of Golgi apparatus and endosomes in all cell types. AUX1 action in the lateral root cap and/or epidermal cells influences lateral root initiation and positioning.	O.I.	C.G.	H.G.
9.9	99.1	34.3	At5g54630	835552	zinc finger protein-related	F:transcription factor activity;P:regulation of transcription;C:intracellular;PFMO	O.I.	C.G.	H.G.
9.8	99.1	12.0	At3g42800	823322	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;OMBFP	O.I.	C.G.	H.G.
9.7	99.1	75.7	At2g01420	814670	PIN4 (PIN-FORMED 4)	Encodes a putative auxin efflux carrier that is localized in developing and mature root meristems. It is involved in the maintenance of embryonic auxin gradients. A role for AtPIN4 in generating a sink for auxin below the quiescent center of the root meristem that is essential for auxin distribution and patterning is proposed. In the root, PIN4 is detected around the quiescent center and cells surrounding it, and localizes basally in provascular cells. PIN4 expression is upregulated in brassinosteroid-insensitive mutant (PMID 16141452).	O.I.	C.G.	H.G.
9.7	99.1	33.8	At2g22720	816802	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOFBPVA	O.I.	C.G.	H.G.
9.6	99.1	37.3	At1g18620	838443	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBV	O.I.	C.G.	H.G.
9.6	99.1	36.1	At1g48480	841269	RKL1	Arabidopsis thaliana receptor-like protein kinase (RKL1) gene	O.I.	C.G.	H.G.
9.5	99.1	50.3	At4g30993	829225	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
9.5	99.1	24.4	At1g80000	844340	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVA	O.I.	C.G.	H.G.
9.4	99.1	67.3	At3g62660	825440	GATL7 (Galacturonosyltransferase-like 7)	Encodes a protein with putative galacturonosyltransferase activity.	O.I.	C.G.	H.G.
9.3	99.1	80.9	At2g15090	815998	KCS8 (3-KETOACYL-COA SYNTHASE 8)	Encodes KCS8, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).	O.I.	C.G.	H.G.
9.3	99.1	15.7	At3g60390	825210	HAT3 (HOMEOBOX-LEUCINE ZIPPER PROTEIN 3)	Encodes homeobox protein HAT3.	O.I.	C.G.	H.G.
9.2	99.1	20.3	At2g42300	818831	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMF	O.I.	C.G.	H.G.
9.2	99.1	17.5	At3g50240	824186	KICP-02	Encodes a kinesin-related protein.	O.I.	C.G.	H.G.
9.2	99.1	13.1	At1g72410	843573	COP1-interacting protein-related	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOFBPVA	O.I.	C.G.	H.G.
9.1	99.1	103.0	At1g68560	843185	XYL1 (ALPHA-XYLOSIDASE 1)	Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 3 of glycoside hydrolases.	O.I.	C.G.	H.G.
9.0	99.1	133.7	At1g22530	838859	PATL2 (PATELLIN 2)	F:transporter activity;P:transport;C:plasma membrane, chloroplast;MOBFPVA	O.I.	C.G.	H.G.
8.9	99.0	75.2	At5g44680	834497	methyladenine glycosylase family protein	F:DNA-3-methyladenine glycosylase I activity, catalytic activity;P:DNA repair, base-excision repair;C:unknown;BOPAMF	O.I.	C.G.	H.G.
8.9	99.0	61.6	At4g24800	828582	MA3 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF	O.I.	C.G.	H.G.
8.9	99.0	56.3	At1g61900	842486	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;P	O.I.	C.G.	H.G.
8.9	99.0	46.5	At1g33240	840218	AT-GTL1 (GT2-LIKE 1)	Encodes a plant transcriptional activator that contains two separate, but similar, trihelix DNA-binding domains, similar to GT-2. Gene is expressed in all aerial parts of the plant, with higher level of expression in siliques. At-GTL2 was thought to be a duplicated copy of this gene but is likely to be a cloning artefact, the result of a chimeric clone.	O.I.	C.G.	H.G.
8.9	99.0	4.3	At2g42380	818839	bZIP transcription factor family protein	Encodes a member of the BZIP family of transcription factors. Forms heterodimers with the related protein AtbZIP61. Binds to G-boxes in vitro and is localized to the nucleus in onion epidermal cells.	O.I.	C.G.	H.G.
8.8	99.0	23.9	At2g46180	819225	GC4 (golgin candidate 4)	This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC4 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (169 aa) portion of the protein.	O.I.	C.G.	H.G.
8.7	99.0	24.2	At1g78260	844161	RNA recognition motif (RRM)-containing protein	F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBA	O.I.	C.G.	H.G.
8.6	99.0	58.0	At1g14280	837989	PKS2 (PHYTOCHROME KINASE SUBSTRATE 2)	Encodes phytochrome kinase substrate 2. PKS proteins are critical for hypocotyl phototropism.	O.I.	C.G.	H.G.

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GSM ID	-
Assay name	E-MEXP-1304-raw-cel-1530619577
GSE experiment	-

Microarray experiments to specifically-expressed genes

GSM ID - Assay name E-MEXP-1304-raw-cel-1530619577 GSE experiment -

GSM ID -

Assay name E-MEXP-1304-raw-cel-1530619577

GSE experiment -