Microarray experiments to specifically-expressed genes

Assay name E-MEXP-1304-raw-cel-1530618649
GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
115.699.9155.7At5g01740831686-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO.I.C.G.H.G.
18.799.547.2At2g13610815846ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPVO.I.C.G.H.G.
18.399.541.4At3g61550825328zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVO.I.C.G.H.G.
18.399.516.8At5g07000830591ST2B (SULFOTRANSFERASE 2B)Encodes a member of the sulfotransferase family of proteins. Although it has 85% amino acid identity with ST2A (At5g07010), this protein is not able to transfer a sulfate group to 11- or 12-hydroxyjasmonic acid in vitro. It may be able to act on structurally related jasmonates.O.I.C.G.H.G.
16.099.547.2At1g22740838880RABG3BGTP-binding protein Rab7O.I.C.G.H.G.
15.899.5116.6At5g23660832431MTN3 (Arabidopsis homolog of Medicago truncatula MTN3)homolog of the Medicago nodulin MTN3O.I.C.G.H.G.
15.099.461.2At2g47930819405AGP26 (ARABINOGALACTAN PROTEIN 26)F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;OPMVBFAO.I.C.G.H.G.
14.699.463.5At4g386908300251-phosphatidylinositol phosphodiesterase-relatedF:phospholipase C activity, phosphoric diester hydrolase activity;P:intracellular signaling cascade, N-terminal protein myristoylation, lipid metabolic process;C:cellular_component unknown;BFMPOO.I.C.G.H.G.
12.999.370.1At1g75820843915CLV1 (CLAVATA 1)Putative receptor kinase with an extracellular leucine-rich domain. Controls shoot and floral meristem size, and contributes to establish and maintain floral meristem identity. Negatively regulated by KAPP (kinase-associated protein phosphatase). CLV3 peptide binds directly CLV1 ectodomain.O.I.C.G.H.G.
11.999.328.1At5g57760835884unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
11.799.3130.5At5g02480831883-F:unknown;P:unknown;C:cellular_component unknown;PO.I.C.G.H.G.
11.799.356.1At5g01240831866amino acid permease, putativeF:transporter activity;P:amino acid transport;C:membrane;PFMOO.I.C.G.H.G.
11.799.38.5At3g53250824492auxin-responsive family proteinF:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;POO.I.C.G.H.G.
11.699.339.7At2g02950814823PKS1 (PHYTOCHROME KINASE SUBSTRATE 1)Encodes a basic soluble protein which can independently bind to either PHYA or PHYB, regardless of whether the phytochromes are in the Pr or Pfr state. PKS1 can be phosphorylated by oat phyA in vitro in a light regulated manner. It is postulated to be a negative regulator of phyB signalling.O.I.C.G.H.G.
11.599.326.0At1g49200841343zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVO.I.C.G.H.G.
11.399.3239.5At3g47340823888ASN1 (GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1)encodes a glutamine-dependent asparagine synthetase, the predicted ASN1 peptide contains a purF-type glutamine-binding domain, and is expressed predominantly in shoot tissues, where light has a negative effect on its mRNA accumulation. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell.O.I.C.G.H.G.
11.399.364.0At3g54140824581PTR1 (PEPTIDE TRANSPORTER 1)Encodes a di- and tri-peptide transporter that recognizes a variety of different amino acid combinations. GFP-tagged PTR1 localizes to the plasma membrane and has 8 to 11 predicted transmembrane domains. PTR1 is expressed in a number of different vascular tissues throughout the plant based on promoter:GUS expression analysis. ptr1 mutants have a lower dry weight than wild type plants when both are grown with Pro-Ala or Ala-Ala dipeptides as their nitrogen source, suggesting that PTR1 plays a role in dipeptide uptake in the roots. Furthermore N content of ptr1 mutants is lower than that of wild type plants when grown with Pro-Ala or a mixture of dipeptides as nitrogen sourceO.I.C.G.H.G.
11.399.332.6At3g07650819956COL9 (CONSTANS-LIKE 9)This gene belongs to the CO (CONSTANS) gene family. This gene family is divided in three subgroups: groups III, to which COL9 belongs, is characterised by one B-box (supposed to regulate protein-protein interactions) and a second diverged zinc finger. COL9 downregulates expression of CO (CONSTANS) as well as FT and SOC1 which are known regulatory targets of CO.O.I.C.G.H.G.
11.199.2106.4At5g25350832607EBF2 (EIN3-BINDING F BOX PROTEIN 2)Arabidopsis thaliana EIN3-binding F-box protein 2 (EBF2) mRNA. Part of the SCF complex, it is located in the nucleus and is involved in the ethylene-response pathway.O.I.C.G.H.G.
10.999.2102.7At1g19350838518BES1 (BRI1-EMS-SUPPRESSOR 1)Encodes brassinosteroid (BR) signalling protein that accumulates in the nucleus as dephosphorylated form in response to BRs. Is phosphorylated by the BIN2 GSK3 kinase. It synergistically interacts with BIM1 to bind to E box sequences (CANNTG). The protein contains a nuclear localization signal (NLS), followed by a highly conserved amino-terminal domain (N) shared by all family members, a BIN2 phosphorylation domain (P), a PEST motif, involved in protein degradation in the absence of BR, and a carboxyl-terminal domain. BES1 can interact with the ELF6 and REF6 Jumonji N/C-domain containing proteins and may direct them to modify histone methylation upstream of some brassinosteroid responsive-genesO.I.C.G.H.G.
10.699.255.4At1g07720837286KCS3 (3-KETOACYL-COA SYNTHASE 3)Encodes KCS3, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).O.I.C.G.H.G.
10.599.233.1At5g06270830515unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
10.399.2175.1At2g39570818542ACT domain-containing proteinF:amino acid binding;P:metabolic process;C:unknown;POBO.I.C.G.H.G.
10.399.252.0At2g26980817240CIPK3 (CBL-INTERACTING PROTEIN KINASE 3)encodes a serine-threonine protein kinase whose expression increases in response to abscisic acid, cold, drought, high salt, and wounding conditions. The gene is expressed in developing seeds and seedlings. Lines carrying a T-DNA insertions have reduced germination efficiency and expression of cold, high-salt, and abscisic acid marker genes are altered, but not drought-response markers.O.I.C.G.H.G.
10.399.239.5At2g20040--O.I.C.G.H.G. (glycerol-3-phosphate acyltransferase 8)Involved in cutin assembly. Is functional redundant of GPAT4.O.I.C.G.H.G. (BR ENHANCED EXPRESSION 3)F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFMBOO.I.C.G.H.G. (TRYPTOPHAN AMINOTRANSFERASE OF ARABIDOPSIS 1)TAA1 is involved in the shade-induced production of indole-3-pyruvate (IPA), a precursor to IAA, a biologically active auxin. It is also involved in regulating many aspects of plant growth and development from embryogenesis to flower formation and plays a role in ethylene-mediated signaling. This enzyme can catalyze the formation of IPA from L-tryptophan. Though L-Trp is expected to be the preferred substrate in vivo, TAA1 also acts as an aminotransferase using L-Phe, L-Tyr, L-Leu, L-Ala, L-Met, and L-Gln.O.I.C.G.H.G.
9.899.1114.4At5g55620835656unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
9.899.144.3At4g37540829909LBD39 (LOB DOMAIN-CONTAINING PROTEIN 39)F:unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
9.899.116.5At1g11350837677SD1-13 (S-DOMAIN-1 13)F:protein serine/threonine kinase activity, protein kinase activity, kinase activity;P:protein amino acid autophosphorylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
9.799.136.1At5g51200835195unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPFOO.I.C.G.H.G.
9.499.116.7At5g18290831947SIP1Belongs to a family of plant aquaporins.Similar to yeast and radish aquaporins. Located on ERO.I.C.G.H.G.
9.499.17.0At5g16560831518KAN (KANADI)Encodes a KANADI protein (KAN) that regulates organ polarity in Arabidopsis. KAN is required for abaxial identity in both leaves and carpels, and encodes a nuclear-localized protein in the GARP family of putative transcription factors. Together with KAN2, this gene appears to be involved in the development of the carpel and the outer integument of the ovule.Along with KAN2 and KAN4, KAN1 appears to be required for proper regulation of PIN1 in early embryogenesis.O.I.C.G.H.G.
9.399.115.3At5g26200832689mitochondrial substrate carrier family proteinF:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPOO.I.C.G.H.G. (AUTO-INHIBITED CA(2+)-ATPASE, ISOFORM 4)encodes a calmodulin-regulated Ca(2+)-ATPase that improves salt tolerance in yeast. localized to the vacuole.O.I.C.G.H.G. efflux family proteinF:antiporter activity, drug transporter activity, transporter activity;P:response to wounding;C:membrane;BOPFMAO.I.C.G.H.G. phosphatase 2C family protein / PP2C family proteinF:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBVO.I.C.G.H.G. (REVEILLE 2)Encodes a MYB family transcription factor Circadian 1 (CIR1). Involved in circadian regulation in Arabidopsis.O.I.C.G.H.G. finger (GATA type) family proteinF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PFOMO.I.C.G.H.G. transcription factor family proteinF:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PMBOO.I.C.G.H.G.
8.999.012.3At3g44820823616protein binding / signal transducerF:protein binding, signal transducer activity;P:response to light stimulus;C:cellular_component unknown;PMO.I.C.G.H.G.

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