Microarray experiments to specifically-expressed genes

GSM ID -
Assay name E-MEXP-1304-raw-cel-1530618235
GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
127.099.9208.0At5g44440834471FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAMO.I.C.G.H.G.
114.999.9243.2At5g04120830290phosphoglycerate/bisphosphoglycerate mutase family proteinF:catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.
97.699.971.3At3g14370820658WAG2The WAG2 and its homolog, WAG1 each encodes protein-serine/threonine kinase that are nearly 70% identical to PsPK3 protein. All three together with CsPK3 belong to PsPK3-type kinases. At the N-terminus, all four possess a serine/threonine-rich domain. They are closely related to Arabidopsis kinases PINOID. wag1/wag2 double mutants exhibit a pronounced wavy root phenotype when grown vertically on agar plates (while wild-type plants develop wavy roots only on plates inclined to angles less than 90 degrees), indicating an overlapping role for WAG1 and WAG2 as suppressors of root waving. Simultaneous disruption of PID(AT2G34650) and its 3 closest homologs (PID2/AT2G26700, WAG1/AT1G53700, and WAG2/AT3G14370) abolishes the formation of cotyledons.O.I.C.G.H.G.
91.999.930.2At2g25150817053transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO.I.C.G.H.G.
85.399.973.9At5g53660835447AtGRF7 (GROWTH-REGULATING FACTOR 7)Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in shoot and flower.O.I.C.G.H.G.
73.399.914.4At5g65800836709ACS5 (ACC SYNTHASE 5)1-aminocyclopropane-1-carboxylate synthase (ACS) is encoded by a multigene family consisting of at least five members whose expression is induced by hormones, developmental signals, and protein synthesis inhibition.O.I.C.G.H.G.
62.699.8170.4At5g54190835507PORAlight-dependent NADPH:protochlorophyllide oxidoreductase AO.I.C.G.H.G.
57.899.8192.8At4g30290829152XTH19 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 19)putative xyloglucan endotransglycosylase/hydrolase, expressed throughout both the main and the lateral root, with intensive expression at the dividing and elongating regions. Is expressed in lateral root primordia but expression ceases after lateral root begins to grow.O.I.C.G.H.G.
56.699.858.7At5g57240835830ORP4C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4C)F:oxysterol binding;P:steroid metabolic process;C:cellular_component unknown;MFOPO.I.C.G.H.G.
54.899.854.0At4g35720829724unknown proteinF:unknown;P:unknown;C:unknown;POO.I.C.G.H.G.
52.399.8153.3At4g11190826721disease resistance-responsive family protein / dirigent family proteinF:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;PO.I.C.G.H.G.
51.199.894.8At5g53980835481ATHB52 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 52)Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.O.I.C.G.H.G.
48.499.856.5At5g57760835884unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
47.899.8168.1At1g75780843911TUB1beta tubulin gene downregulated by phytochrome A (phyA)-mediated far-red light high-irradiance and the phytochrome B (phyB)-mediated red light high-irradiance responsesO.I.C.G.H.G.
46.999.8424.7At4g14130827051XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7)xyloglucan endotransglycosylase-related protein (XTR7)O.I.C.G.H.G.
46.099.8151.5At1g67910843119unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
42.799.824.8At5g67020836837unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PBO.I.C.G.H.G.
40.399.828.2At4g37580829913HLS1 (HOOKLESS 1)involved in apical hook development. putative N-acetyltransferaseO.I.C.G.H.G.
39.099.8179.4At2g47780819390rubber elongation factor (REF) protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
38.699.8324.2At4g32460829381-F:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;PBO.I.C.G.H.G.
30.899.796.6At1g65310842839XTH17 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 17)putative xyloglucan endotransglycosylase/hydrolase, expressed in the mature or basal regions of both the main and lateral roots, but not in the tip of these roots where cell division occurs.O.I.C.G.H.G.
30.699.732.4At4g30410829164transcription factorF:transcription factor activity;P:unknown;C:unknown;POO.I.C.G.H.G.
30.599.7105.8At5g02260831736ATEXPA9 (ARABIDOPSIS THALIANA EXPANSIN A9)member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.C.G.H.G.
30.399.785.2At1g62770842576invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
30.099.794.2At5g66590836791allergen V5/Tpx-1-related family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFBOO.I.C.G.H.G.
29.999.757.9At5g23220832386NIC3 (NICOTINAMIDASE 3)F:nicotinamidase activity, catalytic activity;P:metabolic process;C:unknown;BOAFPO.I.C.G.H.G.
29.899.7109.0At1g20190838608ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11)member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.C.G.H.G.
29.799.741.9At4g11610826766C2 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFO.I.C.G.H.G.
29.699.7106.3At4g29270829048acid phosphatase class B family proteinF:acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBOO.I.C.G.H.G.
28.099.712.2At4g10240826615zinc finger (B-box type) family proteinF:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;POMO.I.C.G.H.G.
27.799.7157.3At4g18970827632GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMO.I.C.G.H.G.
27.399.758.0At4g34250829574KCS16 (3-KETOACYL-COA SYNTHASE 16)Encodes KCS16, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).O.I.C.G.H.G.
26.899.759.5At5g63650836485SNRK2.5 (SNF1-RELATED PROTEIN KINASE 2.5)encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress.O.I.C.G.H.G.
26.799.792.6At4g25260828629invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:shade avoidance;C:endomembrane system;PO.I.C.G.H.G.
26.599.7200.5At1g25230839105purple acid phosphatase family proteinF:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:endomembrane system;MOBPFO.I.C.G.H.G.
26.499.776.4At1g64640842772plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;PO.I.C.G.H.G.
26.499.747.6At3g06590819838transcription factorF:transcription factor activity;P:regulation of transcription;C:nucleus, chloroplast;PMOO.I.C.G.H.G.
25.599.7130.3At2g37640818341EXP3member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.O.I.C.G.H.G.
25.299.663.5At5g62280836349unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
25.199.661.7At2g25160817054CYP82F1member of CYP82FO.I.C.G.H.G.
23.599.695.0At3g48970824058copper-binding family proteinF:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:unknown;PBOO.I.C.G.H.G.
21.899.616.7At3g12820820464AtMYB10 (myb domain protein 10)Member of the R2R3 factor gene family.O.I.C.G.H.G.
21.699.6111.4At3g28290822455AT14AEncodes a protein with sequence similarity to integrins. Localized to the cytoplasm and plasma membrane. Expressed in all tissues assayed.O.I.C.G.H.G.
21.399.634.1At2g34020817963calcium ion bindingF:calcium ion binding;P:biological_process unknown;C:unknown;POMBFO.I.C.G.H.G.
21.099.628.4At5g67060836841HEC1 (HECATE 1)F:transcription factor activity;P:transmitting tissue development, carpel formation, regulation of transcription;C:nucleus;PMBOFAO.I.C.G.H.G.
20.999.628.6At4g16670827369phosphoinositide bindingF:phosphoinositide binding;P:signal transduction;C:cellular_component unknown;PFOO.I.C.G.H.G.
20.999.612.3At2g46990819313IAA20 (INDOLE-3-ACETIC ACID INDUCIBLE 20)Encodes a member of the Aux/IAA family of proteins implicated in auxin signaling. IAA20 lacks the conserved degron (domain II) found in many family members, and IAA20 fusion proteins are stable in Arabidopsis seedlings. IAA20 transcripts are induced by auxin treatment, and overexpression of IAA20 leads to defects in gravitropism, root development, root meristem maintenance, etiolation, and cotyledon vascular development.O.I.C.G.H.G.
20.899.616.0At2g19660816485DC1 domain-containing proteinF:molecular_function unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMOO.I.C.G.H.G.
20.199.689.0At5g42600834267MRN1 (MARNERAL SYNTHASE)Encodes an oxidosqualene synthase that produces the monocyclic triterpene marneral.O.I.C.G.H.G.
20.099.635.3At1g09530837479PIF3 (PHYTOCHROME INTERACTING FACTOR 3)Transcription factor interacting with photoreceptors phyA and phyB. Forms a ternary complex in vitro with G-box element of the promoters of LHY, CCA1. Acts as a negative regulator of phyB signalling. It degrades rapidly after irradiation of dark grown seedlings in a process controlled by phytochromes. Does not play a significant role in controlling light input and function of the circadian clockwork. Binds to G- and E-boxes, but not to other ACEs. Binds to anthocyanin biosynthetic genes in a light- and HY5-independent fashion. PIF3 function as a transcriptional activator can be functionally and mechanistically separated from its role in repression of PhyB mediated processes.O.I.C.G.H.G.
19.999.682.4At5g39110833904germin-like protein, putativeF:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOO.I.C.G.H.G.
19.899.627.6At4g01410828166harpin-induced family protein / HIN1 family protein / harpin-responsive family proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PO.I.C.G.H.G.
19.899.618.7At1g06980837208unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
19.699.6240.2At3g12610820441DRT100 (DNA-DAMAGE REPAIR/TOLERATION 100)Plays role in DNA-damage repair/toleration. Partially complements RecA- phenotypes.O.I.C.G.H.G.
18.899.5225.7At1g28330839729DYL1 (DORMANCY-ASSOCIATED PROTEIN-LIKE 1)dormancy-associated protein (DRM1)O.I.C.G.H.G.
18.399.582.2At1g52100841640jacalin lectin family proteinF:molecular_function unknown;P:biological_process unknown;C:membrane;PFOO.I.C.G.H.G.
17.899.533.9At4g38400829997ATEXLA2 (ARABIDOPSIS THALIANA EXPANSIN-LIKE A2)member of EXPANSIN-LIKE. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.C.G.H.G.
17.799.5103.3At5g12940831134leucine-rich repeat family proteinF:protein binding;P:signal transduction;C:endomembrane system;PMOBFAO.I.C.G.H.G.
17.299.5318.2At1g70830843420MLP28 (MLP-LIKE PROTEIN 28)F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;PFO.I.C.G.H.G.
17.299.5172.7At5g60660836187PIP2F:water channel activity;P:transport;C:integral to membrane, membrane;BPMOFAVO.I.C.G.H.G.
17.099.529.4At3g03170821064unknown proteinF:unknown;P:unknown;C:cellular_component unknown;PO.I.C.G.H.G.
16.999.5105.9At4g17730827494SYP23 (SYNTAXIN OF PLANTS 23)member of SYP2 Gene FamilyO.I.C.G.H.G.
16.599.5140.9At1g27030839592unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPO.I.C.G.H.G.
16.599.542.5At1g64670842775BDG1 (BODYGUARD1)Encodes a epidermally expressed extracellular protein that likely functions as an alpha-beta hydrolase and is required for normal cuticle formation. Homozygous mutant plants are dwarfed and have abnormal leaves, collapsed cells, reduced numbers of trichomes. The specific role of BDG is unclear: it may function in cutin biosynthesis or as a cross-linking enzyme in the cell wall itself.O.I.C.G.H.G.
16.199.559.2At1g08500837371plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;PO.I.C.G.H.G.
16.099.513.1At1g01390837790UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVOFO.I.C.G.H.G.
15.799.562.0At1g04220839578KCS2 (3-KETOACYL-COA SYNTHASE 2)Encodes KCS2, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).O.I.C.G.H.G.
15.699.5132.0At2g14900815979gibberellin-regulated family proteinF:molecular_function unknown;P:response to gibberellin stimulus;C:endomembrane system;PO.I.C.G.H.G.
15.599.557.6At3g60530825224zinc finger (GATA type) family proteinF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PFOMO.I.C.G.H.G.
15.299.483.7At1g11545837698xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeF:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, cell wall, apoplast;PFBOO.I.C.G.H.G.
14.899.4307.3At2g37130818289peroxidase 21 (PER21) (P21) (PRXR5)F:electron carrier activity, peroxidase activity, heme binding;P:defense response to fungus;C:endomembrane system;PFOO.I.C.G.H.G.
14.899.471.2At4g24510828553CER2 (ECERIFERUM 2)Involved in C28 to C30 fatty acid elongation.O.I.C.G.H.G.
14.799.4123.8At1g12080837760unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVAO.I.C.G.H.G.
14.099.48.4At5g49800835043-F:molecular_function unknown;P:biological_process unknown;C:unknown;MOPBFO.I.C.G.H.G.
13.999.4119.0At5g47990834850CYP705A5encodes a member of the CYP705A family of cytochrome P450 enzymes. It appears to catalyze the addition of a double bond to thalian-diol at carbon 15. Reduced levels of THAD expression lead to a build up of thalian-diol in root extracts. thad1-1 mutants also have longer roots than wild type seedlings.O.I.C.G.H.G.
13.899.463.1At1g07720837286KCS3 (3-KETOACYL-COA SYNTHASE 3)Encodes KCS3, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).O.I.C.G.H.G.
13.699.444.8At5g10770830944chloroplast nucleoid DNA-binding protein, putativeF:DNA binding, aspartic-type endopeptidase activity;P:proteolysis;C:unknown;PMFOBO.I.C.G.H.G.
13.499.415.6At5g51670835241unknown proteinF:unknown;P:biological_process unknown;C:chloroplast;POBO.I.C.G.H.G.
13.499.412.7At1g70270843363ATP binding / DNA bindingF:DNA binding, ATP binding;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
13.399.459.6At3g12710820453methyladenine glycosylase family proteinF:DNA-3-methyladenine glycosylase I activity, catalytic activity;P:DNA repair, base-excision repair;C:unknown;BOPAMO.I.C.G.H.G.
13.399.411.9At3g51410824304unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBFOO.I.C.G.H.G.
13.199.496.7At5g22500832311FAR1 (FATTY ACID REDUCTASE 1)F:oxidoreductase activity, acting on the CH-CH group of donors, fatty acyl-CoA reductase (alcohol-forming) activity;P:microsporogenesis, metabolic process;C:chloroplast;MBFOPO.I.C.G.H.G.
13.199.49.6At1g61170842410unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;MPOVO.I.C.G.H.G.
12.999.3125.2At1g09570837483PHYA (PHYTOCHROME A)Light-labile cytoplasmic red/far-red light photoreceptor involved in the regulation of photomorphogenesis. It exists in two inter-convertible forms: Pr and Pfr (active) and functions as a dimer.The N terminus carries a single tetrapyrrole chromophore, and the C terminus is involved in dimerization. It is the sole photoreceptor mediating the FR high irradiance response (HIR). Major regulator in red-light induction of phototropic enhancement. Involved in the regulation of de-etiolation. Involved in gravitropism and phototropism. Requires FHY1 for nuclear accumulation.O.I.C.G.H.G.
12.799.339.4At5g37790833757protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
12.699.3704.5At2g38530818435LTP2 (LIPID TRANSFER PROTEIN 2)Involved in lipid transfer between membranes. Belongs to a family of Lipid transfer proteins. Sequence similarity to other plant/Arabidopsis LPT genes but highest similarity to LPT1. Stress and pathogen-inducible motifs found in the upstream region. Expressed in flower, leaves and siliques but absent in roots. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.O.I.C.G.H.G.
12.699.3131.2At5g66170836749-F:molecular_function unknown;P:aging;C:cellular_component unknown;PBOAO.I.C.G.H.G.
12.599.3177.7At3g01520821122universal stress protein (USP) family proteinF:molecular_function unknown;P:N-terminal protein myristoylation, response to stress;C:plasma membrane;BPAMOFO.I.C.G.H.G.
12.599.3151.2At5g12250831100TUB6 (BETA-6 TUBULIN)Encodes a beta-tubulin. Expression of TUB6 has been shown to decrease in response to cold treatment.O.I.C.G.H.G.
12.499.311.5At1g27670839659unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
12.399.327.0At5g44260834449zinc finger (CCCH-type) family proteinF:transcription factor activity, nucleic acid binding;P:unknown;C:unknown;MOPFVO.I.C.G.H.G.
12.299.321.2At2g26710817212BAS1 (PHYB ACTIVATION TAGGED SUPPRESSOR 1)Encodes a member of the cytochrome p450 family that serves as a control point between multiple photoreceptor systems and brassinosteroid signal transduction. Involved in brassinolide metabolism. Mediates response to a variety of light signals including hypocotyl elongation and cotyledon expansion.O.I.C.G.H.G.
12.099.316.4At5g66080836740protein phosphatase 2C family protein / PP2C family proteinF:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBVO.I.C.G.H.G.
12.099.312.6At2g22890816820small conjugating protein ligaseF:small conjugating protein ligase activity;P:regulation of protein metabolic process, post-translational protein modification;C:chloroplast;MOPBVO.I.C.G.H.G.
11.699.3376.6At3g16390820886NSP3 (NITRILE SPECIFIER PROTEIN 3)Encodes a nitrile-specifier protein NSP3. NSP3 is one out of five (At3g16400/NSP1, At2g33070/NSP2, At3g16390/NSP3, At3g16410/NSP4 and At5g48180/NSP5) A. thaliana epithiospecifier protein (ESP) homologues that promote simple nitrile, but not epithionitrile or thiocyanate formation.O.I.C.G.H.G.
11.699.3226.1At5g11420831013-F:molecular_function unknown;P:biological_process unknown;C:cell wall, plant-type cell wall;PO.I.C.G.H.G.
11.699.397.2At5g06370830525NC domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PBMOO.I.C.G.H.G.
11.699.324.6At2g38760818458ANNAT3 (ANNEXIN ARABIDOPSIS 3)Annexins are calcium binding proteins that are localized in the cytoplasm. When cytosolic Ca2+ increases, they relocate to the plasma membrane.O.I.C.G.H.G.
11.699.311.2At1g65920842904regulator of chromosome condensation (RCC1) family protein / zinc finger protein-relatedF:zinc ion binding;P:unknown;C:plasma membrane, vacuole;MOBPFAVO.I.C.G.H.G.
11.599.3136.7At2g43050818907ATPMEPCRDF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMO.I.C.G.H.G.



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