CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID -

Assay name E-MEXP-1299-raw-cel-1519903746

GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
75.9 99.9 126.2 At5g01740 831686 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB O.I. C.G. H.G.
46.9 99.8 86.6 At5g62280 836349 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
29.9 99.7 262.3 At1g19530 838540 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P O.I. C.G. H.G.
26.3 99.7 75.0 At3g60530 825224 zinc finger (GATA type) family protein F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PFOM O.I. C.G. H.G.
24.3 99.6 140.9 At5g53160 835397 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
22.7 99.6 49.5 At3g23880 821971 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:nucleus;PO O.I. C.G. H.G.
21.7 99.6 254.3 At2g39570 818542 ACT domain-containing protein F:amino acid binding;P:metabolic process;C:unknown;POB O.I. C.G. H.G.
20.2 99.6 51.8 At3g07870 819978 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
20.2 99.6 8.5 At2g37030 818278 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO O.I. C.G. H.G.
19.8 99.6 34.1 At1g49200 841343 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV O.I. C.G. H.G.
19.0 99.5 58.9 At1g54740 841915 - F:molecular_function unknown;P:biological_process unknown;C:unknown;OPMBF O.I. C.G. H.G.
18.1 99.5 64.9 At3g49790 824141 ATP binding F:ATP binding;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
17.9 99.5 8.8 At5g04190 830297 PKS4 (phytochrome kinase substrate 4) Encodes phytochrome kinase substrate 4, a phytochrome signaling component involved in phototropism. O.I. C.G. H.G.
17.4 99.5 32.0 At5g44260 834449 zinc finger (CCCH-type) family protein F:transcription factor activity, nucleic acid binding;P:unknown;C:unknown;MOPFV O.I. C.G. H.G.
16.9 99.5 94.6 At5g37260 833700 RVE2 (REVEILLE 2) Encodes a MYB family transcription factor Circadian 1 (CIR1). Involved in circadian regulation in Arabidopsis. O.I. C.G. H.G.
16.7 99.5 53.3 At5g43700 834390 ATAUX2-11 (AUXIN INDUCIBLE 2-11) Auxin inducible protein similar to transcription factors. O.I. C.G. H.G.
16.6 99.5 347.0 At2g05540 815103 glycine-rich protein F:unknown;P:unknown;C:endomembrane system;MPBOFVA O.I. C.G. H.G.
16.6 99.5 53.7 At1g02340 839300 HFR1 (LONG HYPOCOTYL IN FAR-RED) Encodes a light-inducible, nuclear bHLH protein involved in phytochrome signaling. Mutants exhibit a long-hypocotyl phenotype only under far-red light but not under red light and are defective in other phytochrome A-related responses. Mutants also show blue light response defects. HFR1 interacts with COP1, co-localizes to the nuclear specks and is ubiquinated by COP1. O.I. C.G. H.G.
16.4 99.5 66.5 At5g01240 831866 amino acid permease, putative F:transporter activity;P:amino acid transport;C:membrane;PFMO O.I. C.G. H.G.
16.3 99.5 175.4 At5g03240 831899 UBQ3 (POLYUBIQUITIN 3) encodes ubiquitin that is attached to proteins destined for degradation. UBQ3 is most homologous with UBQ4, and is expressed in higher levels in vegetative tissue but lower levels in flowers than UBQ4. UBQ3 encodes different number of ubiquitins in different ecotypes. UBQ3 transcript level is modulated by UV-B and light/dark treatments. O.I. C.G. H.G.
15.9 99.5 100.7 At3g45300 823668 IVD (ISOVALERYL-COA-DEHYDROGENASE) Encodes isovaleryl-coenzyme a dehydrogenase. O.I. C.G. H.G.
15.9 99.5 63.7 At1g21400 838739 2-oxoisovalerate dehydrogenase, putative / 3-methyl-2-oxobutanoate dehydrogenase, putative / branched-chain alpha-keto acid dehydrogenase E1 alpha subunit, putative F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity;P:metabolic process;C:unknown;BOMFPA O.I. C.G. H.G.
15.0 99.4 202.1 At1g28330 839729 DYL1 (DORMANCY-ASSOCIATED PROTEIN-LIKE 1) dormancy-associated protein (DRM1) O.I. C.G. H.G.
14.8 99.4 16.5 At4g12690 826881 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
14.7 99.4 60.2 At3g05900 819759 neurofilament protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV O.I. C.G. H.G.
14.6 99.4 48.1 At4g01330 828117 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
14.5 99.4 32.2 At5g49700 835033 DNA-binding protein-related F:unknown;P:biological_process unknown;C:unknown;PMBF O.I. C.G. H.G.
14.3 99.4 58.5 At1g62770 842576 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
14.3 99.4 9.4 At3g53250 824492 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO O.I. C.G. H.G.
14.1 99.4 93.6 At5g16340 831495 AMP-binding protein, putative F:catalytic activity;P:metabolic process;C:unknown;BOMFPAV O.I. C.G. H.G.
13.7 99.4 56.3 At5g19530 832073 ACL5 (ACAULIS 5) Encodes a spermine synthase. Required for internode elongation and vascular development, specifically in the mechanism that defines the boundaries between veins and nonvein regions. This mechanism may be mediated by polar auxin transport. Though ACL5 has been shown to function as a spermine synthase in E. coli, an ACL5 knockout has no effect on the endogenous levels of free and conjugated polyamines in Arabidopsis, suggesting that ACL5 may have a very specific or altogether different in vivo function. O.I. C.G. H.G.
13.4 99.4 57.9 At2g47930 819405 AGP26 (ARABINOGALACTAN PROTEIN 26) F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;OPMVBFA O.I. C.G. H.G.
13.4 99.4 34.0 At1g73830 843719 BEE3 (BR ENHANCED EXPRESSION 3) F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFMBO O.I. C.G. H.G.
13.4 99.4 26.6 At1g34760 840380 GRF11 (GENERAL REGULATORY FACTOR 11) Encodes a 14-3-3 protein. Binds H+-ATPase in response to blue light. O.I. C.G. H.G.
13.1 99.4 17.1 At4g28860 829007 ckl4 (Casein Kinase I-like 4) F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:nucleus, cytoplasm;MOBPFVA O.I. C.G. H.G.
12.8 99.3 33.2 At3g06590 819838 transcription factor F:transcription factor activity;P:regulation of transcription;C:nucleus, chloroplast;PMO O.I. C.G. H.G.
12.7 99.3 42.0 At1g22740 838880 RABG3B GTP-binding protein Rab7 O.I. C.G. H.G.
12.2 99.3 49.5 At1g23870 838998 ATTPS9 Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active as well as a trehalose phosphatase (TPP)-like domain. O.I. C.G. H.G.
12.1 99.3 32.7 At4g34138 829561 UGT73B1 (UDP-glucosyl transferase 73B1) F:quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, abscisic acid glucosyltransferase activity;P:metabolic process;C:endomembrane system;PMBVOF O.I. C.G. H.G.
11.9 99.3 40.2 At2g02950 814823 PKS1 (PHYTOCHROME KINASE SUBSTRATE 1) Encodes a basic soluble protein which can independently bind to either PHYA or PHYB, regardless of whether the phytochromes are in the Pr or Pfr state. PKS1 can be phosphorylated by oat phyA in vitro in a light regulated manner. It is postulated to be a negative regulator of phyB signalling. O.I. C.G. H.G.
11.9 99.3 23.4 At3g45730 823715 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
11.8 99.3 10.2 At4g04990 825841 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOFBV O.I. C.G. H.G.
11.7 99.3 76.3 At5g56100 835709 glycine-rich protein / oleosin F:molecular_function unknown;P:lipid storage;C:monolayer-surrounded lipid storage body, integral to membrane, membrane;PB O.I. C.G. H.G.
11.6 99.3 48.3 At1g76460 843979 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBA O.I. C.G. H.G.
11.5 99.3 24.9 At1g51360 841560 DABB1 (DIMERIC A/B BARREL DOMAINS-PROTEIN 1) Involved in defense against fungal pathogens and located in cytosol. O.I. C.G. H.G.
11.4 99.3 176.4 At2g20670 816595 unknown protein F:unknown;P:unknown;C:chloroplast;PO O.I. C.G. H.G.
11.4 99.3 136.2 At3g61060 825278 AtPP2-A13 (Arabidopsis thaliana phloem protein 2-A13) F:carbohydrate binding;P:N-terminal protein myristoylation, response to wounding;C:unknown;P O.I. C.G. H.G.
11.3 99.3 28.0 At4g23870 828486 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
11.2 99.2 55.7 At4g38690 830025 1-phosphatidylinositol phosphodiesterase-related F:phospholipase C activity, phosphoric diester hydrolase activity;P:intracellular signaling cascade, N-terminal protein myristoylation, lipid metabolic process;C:cellular_component unknown;BFMPO O.I. C.G. H.G.
11.2 99.2 19.9 At5g14090 831258 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
11.0 99.2 41.1 At3g19860 821523 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOFBV O.I. C.G. H.G.
10.9 99.2 56.5 At3g17440 821008 NPSN13 (NOVEL PLANT SNARE 13) member of NPSN Gene Family O.I. C.G. H.G.
10.8 99.2 139.2 At2g37750 818352 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
10.8 99.2 16.4 At1g04310 839549 ERS2 (ETHYLENE RESPONSE SENSOR 2) encodes an ethylene receptor related to bacterial two-component histidine kinases. O.I. C.G. H.G.
10.7 99.2 45.0 At3g04350 819590 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMBO O.I. C.G. H.G.
10.5 99.2 12.7 At5g07000 830591 ST2B (SULFOTRANSFERASE 2B) Encodes a member of the sulfotransferase family of proteins. Although it has 85% amino acid identity with ST2A (At5g07010), this protein is not able to transfer a sulfate group to 11- or 12-hydroxyjasmonic acid in vitro. It may be able to act on structurally related jasmonates. O.I. C.G. H.G.
10.5 99.2 10.6 At1g27670 839659 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
10.4 99.2 60.4 At2g39980 818586 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFB O.I. C.G. H.G.
10.3 99.2 388.7 At4g35770 829730 SEN1 (SENESCENCE 1) Senescence-associated gene that is strongly induced by phosphate starvation. Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant. O.I. C.G. H.G.
10.3 99.2 103.9 At1g12080 837760 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA O.I. C.G. H.G.
10.1 99.2 126.0 At1g52190 841649 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;PBMFO O.I. C.G. H.G.
10.0 99.2 98.6 At4g18710 827605 BIN2 (BRASSINOSTEROID-INSENSITIVE 2) ATSK (shaggy-like kinase) family member that encodes an AtSK protein involved in the cross-talk between auxin and brassinosteroid signaling pathways. BR-INSENSITIVE 2 mutant indicated that the BR-insensitive dwarf phenotype was due to a semidominant mutation in the BIN2. BIN2 is not allelic to BRI1. BIN2-mediated phosphorylation appears to promote BZR1 export from the nucleus. O.I. C.G. H.G.
10.0 99.2 25.7 At5g57760 835884 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
9.9 99.1 95.9 At3g06850 819869 BCE2 dihydrolipoamide branched chain acyltransferase O.I. C.G. H.G.
9.8 99.1 52.1 At3g17100 820967 transcription factor F:transcription factor activity;P:regulation of transcription;C:nucleus, chloroplast;PM O.I. C.G. H.G.
9.6 99.1 216.6 At5g56870 835789 BGAL4 (beta-galactosidase 4) F:beta-galactosidase activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:endomembrane system, beta-galactosidase complex;PBMFOA O.I. C.G. H.G.
9.6 99.1 157.7 At5g25280 832600 serine-rich protein-related F:molecular_function unknown;P:biological_process unknown;C:unknown;OMPFB O.I. C.G. H.G.
9.5 99.1 108.9 At3g16570 820907 RALFL23 (ralf-like 23) Encodes RALF23, a member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. RALF23 is significantly downregulated by brassinolide treatment of seedlings. Overexpression of AtRALF23 impairs brassinolide-induced hypocotyls elongation, and mature overexpressing plants are shorter and bushier. RALF23 overexpression produces slower growing seedlings with roots that have reduced capacity to acidify the rhizosphere. O.I. C.G. H.G.
9.5 99.1 101.5 At1g03090 838362 MCCA MCCA is the biotinylated subunit of the dimer MCCase, which is involved in leucine degradation. Both subunits are nuclear coded and the active enzyme is located in the mitochondrion. O.I. C.G. H.G.
9.5 99.1 49.9 At2g26980 817240 CIPK3 (CBL-INTERACTING PROTEIN KINASE 3) encodes a serine-threonine protein kinase whose expression increases in response to abscisic acid, cold, drought, high salt, and wounding conditions. The gene is expressed in developing seeds and seedlings. Lines carrying a T-DNA insertions have reduced germination efficiency and expression of cold, high-salt, and abscisic acid marker genes are altered, but not drought-response markers. O.I. C.G. H.G.
9.3 99.1 30.2 At1g13640 837925 phosphatidylinositol 3- and 4-kinase family protein F:inositol or phosphatidylinositol kinase activity, phosphotransferase activity, alcohol group as acceptor;P:unknown;C:cellular_component unknown;MPOFB O.I. C.G. H.G.
9.2 99.1 91.6 At3g01690 821094 - F:unknown;P:unknown;C:unknown;OBMPFVA O.I. C.G. H.G.
9.2 99.1 64.3 At1g26665 839207 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO O.I. C.G. H.G.
9.1 99.1 44.6 At5g42820 834293 U2AF35B U2 auxiliary factor small subunit. The atU2AF35b protein and its homolog, atU2AF35a, contain most of the conserved domains of hsU2AF35, including the psiRRM, one RS domain, two zinc fingers, and the two regions for interacting with U2AF large subunit. Both proteins lack the stretch of glycines present in human U2AF35. The sequences are overall 83% identical, and each Arabidopsis homolog shows approximately 70% similarity to hsU2AF35. U2AF(35) homologs were also identified from maize, rice and other plants with large-scale EST projects. Both genes are expressed in all major tissues, with atU2AF(35)a expressed at a higher level than atU2AF(35)b in most tissues. The expression patterns were different in roots: atU2AF(35)b expressed strongly in whole young roots and root tips and atU2AF(35)a limited to root vascular regions. O.I. C.G. H.G.
9.1 99.1 30.2 At1g05890 837099 zinc finger protein-related F:protein binding, zinc ion binding, nucleic acid binding;P:unknown;C:unknown;MOFPV O.I. C.G. H.G.
9.0 99.1 176.5 At3g48360 823994 BT2 (BTB AND TAZ DOMAIN PROTEIN 2) encodes a protein (BT2) that is an essential component of the TAC1-mediated telomerase activation pathway. Acts redundantly with BT3 and BT1 during female gametophyte development and with BT3 during male gametophyte development. O.I. C.G. H.G.
9.0 99.1 74.2 At4g32760 829412 protein transporter F:protein transporter activity;P:intracellular protein transport, intra-Golgi vesicle-mediated transport;C:Golgi stack, plasma membrane;MOFPBVA O.I. C.G. H.G.
9.0 99.1 59.1 At4g25910 828697 NFU3 Encodes a protein containing the NFU domain that may be involved in iron-sulfur cluster assembly. Part of a five member gene family, more closely related to NFU1 and 2 than to NFU4 and 5. Targeted to the chloroplast. O.I. C.G. H.G.
8.8 99.0 69.2 At1g70940 843432 PIN3 (PIN-FORMED 3) A regulator of auxin efflux and involved in differential growth. PIN3 is expressed in gravity-sensing tissues, with PIN3 protein accumulating predominantly at the lateral cell surface. PIN3 localizes to the plasma membrane and to vesicles. In roots, PIN3 is expressed without pronounced polarity in tiers two and three of the columella cells, at the basal side of vascular cells, and to the lateral side of pericycle cells of the elongation zone. PIN3 overexpression inhibits root cell growth. Protein phosphorylation plays a role in PIN3 trafficking to the plasma membrane. O.I. C.G. H.G.
8.8 99.0 58.6 At2g39400 818525 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:unknown;BOPMFVA O.I. C.G. H.G.
8.8 99.0 47.5 At3g16950 820951 LPD1 (LIPOAMIDE DEHYDROGENASE 1) encodes a plastid lipoamide dehydrogenase, subunit of the pyruvate dehydrogenase complex which provides acetyl-CoA for de novo fatty acid biosynthesis. The gene is highly expressed in developing seeds. O.I. C.G. H.G.
8.8 99.0 13.1 At2g01860 814717 EMB975 (EMBRYO DEFECTIVE 975) F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POF O.I. C.G. H.G.
8.7 99.0 134.6 At5g52920 835369 PKP-BETA1 (PLASTIDIC PYRUVATE KINASE BETA SUBUNIT 1) encodes a dominant chloroplast pyruvate kinase beta subunit. Important for seed oil biosynthesis. Ubiquitously expressed, with significantly increased expression in maturing seeds. The mutant plant has wrinkled seeds, with a 50-70% reduction in seed fatty acid content. O.I. C.G. H.G.
8.7 99.0 99.1 At3g23030 821877 IAA2 (INDOLE-3-ACETIC ACID INDUCIBLE 2) auxin inducible gene expressed in the nucleus O.I. C.G. H.G.
8.7 99.0 52.2 At2g45620 819170 nucleotidyltransferase family protein F:nucleotidyltransferase activity;P:biological_process unknown;C:cellular_component unknown;MOFPB O.I. C.G. H.G.
8.6 99.0 150.5 At3g15630 820805 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
8.6 99.0 14.8 At1g31350 840024 F-box family protein F:molecular_function unknown;P:unknown;C:cellular_component unknown;PMBO O.I. C.G. H.G.
8.6 99.0 5.7 At4g36470 829799 S-adenosyl-L-methionine:carboxyl methyltransferase family protein F:S-adenosylmethionine-dependent methyltransferase activity;P:biological_process unknown;C:cellular_component unknown;POBMF O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
75.9	99.9	126.2	At5g01740	831686	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB	O.I.	C.G.	H.G.
46.9	99.8	86.6	At5g62280	836349	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
29.9	99.7	262.3	At1g19530	838540	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P	O.I.	C.G.	H.G.
26.3	99.7	75.0	At3g60530	825224	zinc finger (GATA type) family protein	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PFOM	O.I.	C.G.	H.G.
24.3	99.6	140.9	At5g53160	835397	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
22.7	99.6	49.5	At3g23880	821971	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:nucleus;PO	O.I.	C.G.	H.G.
21.7	99.6	254.3	At2g39570	818542	ACT domain-containing protein	F:amino acid binding;P:metabolic process;C:unknown;POB	O.I.	C.G.	H.G.
20.2	99.6	51.8	At3g07870	819978	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
20.2	99.6	8.5	At2g37030	818278	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
19.8	99.6	34.1	At1g49200	841343	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV	O.I.	C.G.	H.G.
19.0	99.5	58.9	At1g54740	841915	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;OPMBF	O.I.	C.G.	H.G.
18.1	99.5	64.9	At3g49790	824141	ATP binding	F:ATP binding;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
17.9	99.5	8.8	At5g04190	830297	PKS4 (phytochrome kinase substrate 4)	Encodes phytochrome kinase substrate 4, a phytochrome signaling component involved in phototropism.	O.I.	C.G.	H.G.
17.4	99.5	32.0	At5g44260	834449	zinc finger (CCCH-type) family protein	F:transcription factor activity, nucleic acid binding;P:unknown;C:unknown;MOPFV	O.I.	C.G.	H.G.
16.9	99.5	94.6	At5g37260	833700	RVE2 (REVEILLE 2)	Encodes a MYB family transcription factor Circadian 1 (CIR1). Involved in circadian regulation in Arabidopsis.	O.I.	C.G.	H.G.
16.7	99.5	53.3	At5g43700	834390	ATAUX2-11 (AUXIN INDUCIBLE 2-11)	Auxin inducible protein similar to transcription factors.	O.I.	C.G.	H.G.
16.6	99.5	347.0	At2g05540	815103	glycine-rich protein	F:unknown;P:unknown;C:endomembrane system;MPBOFVA	O.I.	C.G.	H.G.
16.6	99.5	53.7	At1g02340	839300	HFR1 (LONG HYPOCOTYL IN FAR-RED)	Encodes a light-inducible, nuclear bHLH protein involved in phytochrome signaling. Mutants exhibit a long-hypocotyl phenotype only under far-red light but not under red light and are defective in other phytochrome A-related responses. Mutants also show blue light response defects. HFR1 interacts with COP1, co-localizes to the nuclear specks and is ubiquinated by COP1.	O.I.	C.G.	H.G.
16.4	99.5	66.5	At5g01240	831866	amino acid permease, putative	F:transporter activity;P:amino acid transport;C:membrane;PFMO	O.I.	C.G.	H.G.
16.3	99.5	175.4	At5g03240	831899	UBQ3 (POLYUBIQUITIN 3)	encodes ubiquitin that is attached to proteins destined for degradation. UBQ3 is most homologous with UBQ4, and is expressed in higher levels in vegetative tissue but lower levels in flowers than UBQ4. UBQ3 encodes different number of ubiquitins in different ecotypes. UBQ3 transcript level is modulated by UV-B and light/dark treatments.	O.I.	C.G.	H.G.
15.9	99.5	100.7	At3g45300	823668	IVD (ISOVALERYL-COA-DEHYDROGENASE)	Encodes isovaleryl-coenzyme a dehydrogenase.	O.I.	C.G.	H.G.
15.9	99.5	63.7	At1g21400	838739	2-oxoisovalerate dehydrogenase, putative / 3-methyl-2-oxobutanoate dehydrogenase, putative / branched-chain alpha-keto acid dehydrogenase E1 alpha subunit, putative	F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity;P:metabolic process;C:unknown;BOMFPA	O.I.	C.G.	H.G.
15.0	99.4	202.1	At1g28330	839729	DYL1 (DORMANCY-ASSOCIATED PROTEIN-LIKE 1)	dormancy-associated protein (DRM1)	O.I.	C.G.	H.G.
14.8	99.4	16.5	At4g12690	826881	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
14.7	99.4	60.2	At3g05900	819759	neurofilament protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV	O.I.	C.G.	H.G.
14.6	99.4	48.1	At4g01330	828117	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
14.5	99.4	32.2	At5g49700	835033	DNA-binding protein-related	F:unknown;P:biological_process unknown;C:unknown;PMBF	O.I.	C.G.	H.G.
14.3	99.4	58.5	At1g62770	842576	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
14.3	99.4	9.4	At3g53250	824492	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
14.1	99.4	93.6	At5g16340	831495	AMP-binding protein, putative	F:catalytic activity;P:metabolic process;C:unknown;BOMFPAV	O.I.	C.G.	H.G.
13.7	99.4	56.3	At5g19530	832073	ACL5 (ACAULIS 5)	Encodes a spermine synthase. Required for internode elongation and vascular development, specifically in the mechanism that defines the boundaries between veins and nonvein regions. This mechanism may be mediated by polar auxin transport. Though ACL5 has been shown to function as a spermine synthase in E. coli, an ACL5 knockout has no effect on the endogenous levels of free and conjugated polyamines in Arabidopsis, suggesting that ACL5 may have a very specific or altogether different in vivo function.	O.I.	C.G.	H.G.
13.4	99.4	57.9	At2g47930	819405	AGP26 (ARABINOGALACTAN PROTEIN 26)	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;OPMVBFA	O.I.	C.G.	H.G.
13.4	99.4	34.0	At1g73830	843719	BEE3 (BR ENHANCED EXPRESSION 3)	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFMBO	O.I.	C.G.	H.G.
13.4	99.4	26.6	At1g34760	840380	GRF11 (GENERAL REGULATORY FACTOR 11)	Encodes a 14-3-3 protein. Binds H+-ATPase in response to blue light.	O.I.	C.G.	H.G.
13.1	99.4	17.1	At4g28860	829007	ckl4 (Casein Kinase I-like 4)	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:nucleus, cytoplasm;MOBPFVA	O.I.	C.G.	H.G.
12.8	99.3	33.2	At3g06590	819838	transcription factor	F:transcription factor activity;P:regulation of transcription;C:nucleus, chloroplast;PMO	O.I.	C.G.	H.G.
12.7	99.3	42.0	At1g22740	838880	RABG3B	GTP-binding protein Rab7	O.I.	C.G.	H.G.
12.2	99.3	49.5	At1g23870	838998	ATTPS9	Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active as well as a trehalose phosphatase (TPP)-like domain.	O.I.	C.G.	H.G.
12.1	99.3	32.7	At4g34138	829561	UGT73B1 (UDP-glucosyl transferase 73B1)	F:quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, abscisic acid glucosyltransferase activity;P:metabolic process;C:endomembrane system;PMBVOF	O.I.	C.G.	H.G.
11.9	99.3	40.2	At2g02950	814823	PKS1 (PHYTOCHROME KINASE SUBSTRATE 1)	Encodes a basic soluble protein which can independently bind to either PHYA or PHYB, regardless of whether the phytochromes are in the Pr or Pfr state. PKS1 can be phosphorylated by oat phyA in vitro in a light regulated manner. It is postulated to be a negative regulator of phyB signalling.	O.I.	C.G.	H.G.
11.9	99.3	23.4	At3g45730	823715	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
11.8	99.3	10.2	At4g04990	825841	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOFBV	O.I.	C.G.	H.G.
11.7	99.3	76.3	At5g56100	835709	glycine-rich protein / oleosin	F:molecular_function unknown;P:lipid storage;C:monolayer-surrounded lipid storage body, integral to membrane, membrane;PB	O.I.	C.G.	H.G.
11.6	99.3	48.3	At1g76460	843979	RNA recognition motif (RRM)-containing protein	F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBA	O.I.	C.G.	H.G.
11.5	99.3	24.9	At1g51360	841560	DABB1 (DIMERIC A/B BARREL DOMAINS-PROTEIN 1)	Involved in defense against fungal pathogens and located in cytosol.	O.I.	C.G.	H.G.
11.4	99.3	176.4	At2g20670	816595	unknown protein	F:unknown;P:unknown;C:chloroplast;PO	O.I.	C.G.	H.G.
11.4	99.3	136.2	At3g61060	825278	AtPP2-A13 (Arabidopsis thaliana phloem protein 2-A13)	F:carbohydrate binding;P:N-terminal protein myristoylation, response to wounding;C:unknown;P	O.I.	C.G.	H.G.
11.3	99.3	28.0	At4g23870	828486	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
11.2	99.2	55.7	At4g38690	830025	1-phosphatidylinositol phosphodiesterase-related	F:phospholipase C activity, phosphoric diester hydrolase activity;P:intracellular signaling cascade, N-terminal protein myristoylation, lipid metabolic process;C:cellular_component unknown;BFMPO	O.I.	C.G.	H.G.
11.2	99.2	19.9	At5g14090	831258	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
11.0	99.2	41.1	At3g19860	821523	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOFBV	O.I.	C.G.	H.G.
10.9	99.2	56.5	At3g17440	821008	NPSN13 (NOVEL PLANT SNARE 13)	member of NPSN Gene Family	O.I.	C.G.	H.G.
10.8	99.2	139.2	At2g37750	818352	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
10.8	99.2	16.4	At1g04310	839549	ERS2 (ETHYLENE RESPONSE SENSOR 2)	encodes an ethylene receptor related to bacterial two-component histidine kinases.	O.I.	C.G.	H.G.
10.7	99.2	45.0	At3g04350	819590	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMBO	O.I.	C.G.	H.G.
10.5	99.2	12.7	At5g07000	830591	ST2B (SULFOTRANSFERASE 2B)	Encodes a member of the sulfotransferase family of proteins. Although it has 85% amino acid identity with ST2A (At5g07010), this protein is not able to transfer a sulfate group to 11- or 12-hydroxyjasmonic acid in vitro. It may be able to act on structurally related jasmonates.	O.I.	C.G.	H.G.
10.5	99.2	10.6	At1g27670	839659	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
10.4	99.2	60.4	At2g39980	818586	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFB	O.I.	C.G.	H.G.
10.3	99.2	388.7	At4g35770	829730	SEN1 (SENESCENCE 1)	Senescence-associated gene that is strongly induced by phosphate starvation. Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant.	O.I.	C.G.	H.G.
10.3	99.2	103.9	At1g12080	837760	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA	O.I.	C.G.	H.G.
10.1	99.2	126.0	At1g52190	841649	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:membrane;PBMFO	O.I.	C.G.	H.G.
10.0	99.2	98.6	At4g18710	827605	BIN2 (BRASSINOSTEROID-INSENSITIVE 2)	ATSK (shaggy-like kinase) family member that encodes an AtSK protein involved in the cross-talk between auxin and brassinosteroid signaling pathways. BR-INSENSITIVE 2 mutant indicated that the BR-insensitive dwarf phenotype was due to a semidominant mutation in the BIN2. BIN2 is not allelic to BRI1. BIN2-mediated phosphorylation appears to promote BZR1 export from the nucleus.	O.I.	C.G.	H.G.
10.0	99.2	25.7	At5g57760	835884	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
9.9	99.1	95.9	At3g06850	819869	BCE2	dihydrolipoamide branched chain acyltransferase	O.I.	C.G.	H.G.
9.8	99.1	52.1	At3g17100	820967	transcription factor	F:transcription factor activity;P:regulation of transcription;C:nucleus, chloroplast;PM	O.I.	C.G.	H.G.
9.6	99.1	216.6	At5g56870	835789	BGAL4 (beta-galactosidase 4)	F:beta-galactosidase activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:endomembrane system, beta-galactosidase complex;PBMFOA	O.I.	C.G.	H.G.
9.6	99.1	157.7	At5g25280	832600	serine-rich protein-related	F:molecular_function unknown;P:biological_process unknown;C:unknown;OMPFB	O.I.	C.G.	H.G.
9.5	99.1	108.9	At3g16570	820907	RALFL23 (ralf-like 23)	Encodes RALF23, a member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. RALF23 is significantly downregulated by brassinolide treatment of seedlings. Overexpression of AtRALF23 impairs brassinolide-induced hypocotyls elongation, and mature overexpressing plants are shorter and bushier. RALF23 overexpression produces slower growing seedlings with roots that have reduced capacity to acidify the rhizosphere.	O.I.	C.G.	H.G.
9.5	99.1	101.5	At1g03090	838362	MCCA	MCCA is the biotinylated subunit of the dimer MCCase, which is involved in leucine degradation. Both subunits are nuclear coded and the active enzyme is located in the mitochondrion.	O.I.	C.G.	H.G.
9.5	99.1	49.9	At2g26980	817240	CIPK3 (CBL-INTERACTING PROTEIN KINASE 3)	encodes a serine-threonine protein kinase whose expression increases in response to abscisic acid, cold, drought, high salt, and wounding conditions. The gene is expressed in developing seeds and seedlings. Lines carrying a T-DNA insertions have reduced germination efficiency and expression of cold, high-salt, and abscisic acid marker genes are altered, but not drought-response markers.	O.I.	C.G.	H.G.
9.3	99.1	30.2	At1g13640	837925	phosphatidylinositol 3- and 4-kinase family protein	F:inositol or phosphatidylinositol kinase activity, phosphotransferase activity, alcohol group as acceptor;P:unknown;C:cellular_component unknown;MPOFB	O.I.	C.G.	H.G.
9.2	99.1	91.6	At3g01690	821094	-	F:unknown;P:unknown;C:unknown;OBMPFVA	O.I.	C.G.	H.G.
9.2	99.1	64.3	At1g26665	839207	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO	O.I.	C.G.	H.G.
9.1	99.1	44.6	At5g42820	834293	U2AF35B	U2 auxiliary factor small subunit. The atU2AF35b protein and its homolog, atU2AF35a, contain most of the conserved domains of hsU2AF35, including the psiRRM, one RS domain, two zinc fingers, and the two regions for interacting with U2AF large subunit. Both proteins lack the stretch of glycines present in human U2AF35. The sequences are overall 83% identical, and each Arabidopsis homolog shows approximately 70% similarity to hsU2AF35. U2AF(35) homologs were also identified from maize, rice and other plants with large-scale EST projects. Both genes are expressed in all major tissues, with atU2AF(35)a expressed at a higher level than atU2AF(35)b in most tissues. The expression patterns were different in roots: atU2AF(35)b expressed strongly in whole young roots and root tips and atU2AF(35)a limited to root vascular regions.	O.I.	C.G.	H.G.
9.1	99.1	30.2	At1g05890	837099	zinc finger protein-related	F:protein binding, zinc ion binding, nucleic acid binding;P:unknown;C:unknown;MOFPV	O.I.	C.G.	H.G.
9.0	99.1	176.5	At3g48360	823994	BT2 (BTB AND TAZ DOMAIN PROTEIN 2)	encodes a protein (BT2) that is an essential component of the TAC1-mediated telomerase activation pathway. Acts redundantly with BT3 and BT1 during female gametophyte development and with BT3 during male gametophyte development.	O.I.	C.G.	H.G.
9.0	99.1	74.2	At4g32760	829412	protein transporter	F:protein transporter activity;P:intracellular protein transport, intra-Golgi vesicle-mediated transport;C:Golgi stack, plasma membrane;MOFPBVA	O.I.	C.G.	H.G.
9.0	99.1	59.1	At4g25910	828697	NFU3	Encodes a protein containing the NFU domain that may be involved in iron-sulfur cluster assembly. Part of a five member gene family, more closely related to NFU1 and 2 than to NFU4 and 5. Targeted to the chloroplast.	O.I.	C.G.	H.G.
8.8	99.0	69.2	At1g70940	843432	PIN3 (PIN-FORMED 3)	A regulator of auxin efflux and involved in differential growth. PIN3 is expressed in gravity-sensing tissues, with PIN3 protein accumulating predominantly at the lateral cell surface. PIN3 localizes to the plasma membrane and to vesicles. In roots, PIN3 is expressed without pronounced polarity in tiers two and three of the columella cells, at the basal side of vascular cells, and to the lateral side of pericycle cells of the elongation zone. PIN3 overexpression inhibits root cell growth. Protein phosphorylation plays a role in PIN3 trafficking to the plasma membrane.	O.I.	C.G.	H.G.
8.8	99.0	58.6	At2g39400	818525	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:unknown;BOPMFVA	O.I.	C.G.	H.G.
8.8	99.0	47.5	At3g16950	820951	LPD1 (LIPOAMIDE DEHYDROGENASE 1)	encodes a plastid lipoamide dehydrogenase, subunit of the pyruvate dehydrogenase complex which provides acetyl-CoA for de novo fatty acid biosynthesis. The gene is highly expressed in developing seeds.	O.I.	C.G.	H.G.
8.8	99.0	13.1	At2g01860	814717	EMB975 (EMBRYO DEFECTIVE 975)	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POF	O.I.	C.G.	H.G.
8.7	99.0	134.6	At5g52920	835369	PKP-BETA1 (PLASTIDIC PYRUVATE KINASE BETA SUBUNIT 1)	encodes a dominant chloroplast pyruvate kinase beta subunit. Important for seed oil biosynthesis. Ubiquitously expressed, with significantly increased expression in maturing seeds. The mutant plant has wrinkled seeds, with a 50-70% reduction in seed fatty acid content.	O.I.	C.G.	H.G.
8.7	99.0	99.1	At3g23030	821877	IAA2 (INDOLE-3-ACETIC ACID INDUCIBLE 2)	auxin inducible gene expressed in the nucleus	O.I.	C.G.	H.G.
8.7	99.0	52.2	At2g45620	819170	nucleotidyltransferase family protein	F:nucleotidyltransferase activity;P:biological_process unknown;C:cellular_component unknown;MOFPB	O.I.	C.G.	H.G.
8.6	99.0	150.5	At3g15630	820805	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
8.6	99.0	14.8	At1g31350	840024	F-box family protein	F:molecular_function unknown;P:unknown;C:cellular_component unknown;PMBO	O.I.	C.G.	H.G.
8.6	99.0	5.7	At4g36470	829799	S-adenosyl-L-methionine:carboxyl methyltransferase family protein	F:S-adenosylmethionine-dependent methyltransferase activity;P:biological_process unknown;C:cellular_component unknown;POBMF	O.I.	C.G.	H.G.

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GSM ID	-
Assay name	E-MEXP-1299-raw-cel-1519903746
GSE experiment	-

Microarray experiments to specifically-expressed genes

GSM ID - Assay name E-MEXP-1299-raw-cel-1519903746 GSE experiment -

GSM ID -

Assay name E-MEXP-1299-raw-cel-1519903746

GSE experiment -