CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID -

Assay name E-MEXP-1299-raw-cel-1519901992

GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
37.0 99.7 230.8 At5g02840 831766 LCL1 (LHY/CCA1-like 1) CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis. O.I. C.G. H.G.
28.2 99.7 289.6 At2g39570 818542 ACT domain-containing protein F:amino acid binding;P:metabolic process;C:unknown;POB O.I. C.G. H.G.
27.5 99.7 76.0 At5g01740 831686 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB O.I. C.G. H.G.
21.2 99.6 33.4 At1g34760 840380 GRF11 (GENERAL REGULATORY FACTOR 11) Encodes a 14-3-3 protein. Binds H+-ATPase in response to blue light. O.I. C.G. H.G.
15.8 99.5 35.6 At5g05710 830455 pleckstrin homology (PH) domain-containing protein F:molecular_function unknown;P:unknown;C:cellular_component unknown;MOPFV O.I. C.G. H.G.
14.9 99.4 48.8 At5g62280 836349 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
14.2 99.4 86.7 At1g12520 837808 ATCCS (COPPER CHAPERONE FOR SOD1) Copper/zinc superoxide dismutase copper chaperone. Localized to the chloroplast. Expressed in roots and shoots. Up-regulated in response to copper and senescence. The AtACC activates all three CuZnSOD activities located in three different subcellular compartments. Contains three domains, central, ATX-1 like and C-terminal. ATX-1 like domain essential for the copper chaperone function of AtCCS in planta. O.I. C.G. H.G.
14.0 99.4 96.4 At4g17730 827494 SYP23 (SYNTAXIN OF PLANTS 23) member of SYP2 Gene Family O.I. C.G. H.G.
13.0 99.4 72.2 At5g15850 831442 COL1 (constans-like 1) Homologous to the flowering-time gene CONSTANS. O.I. C.G. H.G.
12.9 99.3 92.7 At5g43580 834378 serine-type endopeptidase inhibitor Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860. O.I. C.G. H.G.
12.6 99.3 34.0 At5g03700 831753 PAN domain-containing protein F:sugar binding;P:unknown;C:plasma membrane;P O.I. C.G. H.G.
12.0 99.3 46.7 At1g54740 841915 - F:molecular_function unknown;P:biological_process unknown;C:unknown;OPMBF O.I. C.G. H.G.
12.0 99.3 24.9 At1g73660 843701 protein kinase family protein Encodes a protein with similarity to MAPKKKs. May function as a negative regulator of salt tolerance. O.I. C.G. H.G.
11.5 99.3 75.7 At5g56100 835709 glycine-rich protein / oleosin F:molecular_function unknown;P:lipid storage;C:monolayer-surrounded lipid storage body, integral to membrane, membrane;PB O.I. C.G. H.G.
11.5 99.3 28.8 At5g49700 835033 DNA-binding protein-related F:unknown;P:biological_process unknown;C:unknown;PMBF O.I. C.G. H.G.
11.4 99.3 287.9 At2g05540 815103 glycine-rich protein F:unknown;P:unknown;C:endomembrane system;MPBOFVA O.I. C.G. H.G.
11.4 99.3 105.3 At4g34030 829549 MCCB (3-METHYLCROTONYL-COA CARBOXYLASE) MCC-B is involved in leucine degradation in mitochondria. The active protein is a dimer of MCC-A and MCC-B. MCC-A is biotinylated whereas MCC-B is not. O.I. C.G. H.G.
10.9 99.2 54.7 At1g18460 838426 lipase family protein F:lipase activity;P:glycerol biosynthetic process, lipid metabolic process;C:unknown;MFPO O.I. C.G. H.G.
10.2 99.2 43.4 At5g02540 831913 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA O.I. C.G. H.G.
10.2 99.2 12.5 At5g07000 830591 ST2B (SULFOTRANSFERASE 2B) Encodes a member of the sulfotransferase family of proteins. Although it has 85% amino acid identity with ST2A (At5g07010), this protein is not able to transfer a sulfate group to 11- or 12-hydroxyjasmonic acid in vitro. It may be able to act on structurally related jasmonates. O.I. C.G. H.G.
10.1 99.2 36.9 At2g21950 816731 SKIP6 (SKP1 interacting partner 6) Encodes an SKP1 interacting partner (SKIP6). O.I. C.G. H.G.
9.8 99.1 78.6 At3g02380 821298 COL2 (constans-like 2) homologous to the flowering-time gene CONSTANS (CO) encoding zinc-finger proteins O.I. C.G. H.G.
9.7 99.1 76.8 At5g02760 831234 protein phosphatase 2C family protein / PP2C family protein F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;PMOFBAV O.I. C.G. H.G.
9.5 99.1 174.0 At2g32150 817774 haloacid dehalogenase-like hydrolase family protein F:hydrolase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;OBPFAM O.I. C.G. H.G.
9.3 99.1 108.7 At1g49600 841384 ATRBP47A (Arabidopsis thaliana RNA-binding protein 47a) F:RNA binding;P:unknown;C:unknown;MOPFBVA O.I. C.G. H.G.
9.3 99.1 39.8 At3g21870 821742 CYCP2 F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:unknown;FOMPB O.I. C.G. H.G.
9.2 99.1 59.8 At1g14280 837989 PKS2 (PHYTOCHROME KINASE SUBSTRATE 2) Encodes phytochrome kinase substrate 2. PKS proteins are critical for hypocotyl phototropism. O.I. C.G. H.G.
9.0 99.1 163.5 At4g37300 829885 MEE59 (maternal effect embryo arrest 59) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;P O.I. C.G. H.G.
8.8 99.0 244.7 At1g76490 843982 HMG1 (HYDROXY METHYLGLUTARYL COA REDUCTASE 1) Encodes a 3-hydroxy-3-methylglutaryl coenzyme A reductase, which is involved in melavonate biosynthesis and performs the first committed step in isoprenoid biosynthesis. Expression is activated in dark in leaf tissue but not controlled by light in the root (confine O.I. C.G. H.G.
8.8 99.0 103.4 At1g09570 837483 PHYA (PHYTOCHROME A) Light-labile cytoplasmic red/far-red light photoreceptor involved in the regulation of photomorphogenesis. It exists in two inter-convertible forms: Pr and Pfr (active) and functions as a dimer.The N terminus carries a single tetrapyrrole chromophore, and the C terminus is involved in dimerization. It is the sole photoreceptor mediating the FR high irradiance response (HIR). Major regulator in red-light induction of phototropic enhancement. Involved in the regulation of de-etiolation. Involved in gravitropism and phototropism. Requires FHY1 for nuclear accumulation. O.I. C.G. H.G.
8.6 99.0 119.5 At5g63190 836440 MA3 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF O.I. C.G. H.G.
8.6 99.0 72.7 At4g32760 829412 protein transporter F:protein transporter activity;P:intracellular protein transport, intra-Golgi vesicle-mediated transport;C:Golgi stack, plasma membrane;MOFPBVA O.I. C.G. H.G.
8.6 99.0 33.9 At3g07220 819910 transcriptional activator, putative F:transcription activator activity;P:biological_process unknown;C:cellular_component unknown;FMPO O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
37.0	99.7	230.8	At5g02840	831766	LCL1 (LHY/CCA1-like 1)	CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis.	O.I.	C.G.	H.G.
28.2	99.7	289.6	At2g39570	818542	ACT domain-containing protein	F:amino acid binding;P:metabolic process;C:unknown;POB	O.I.	C.G.	H.G.
27.5	99.7	76.0	At5g01740	831686	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB	O.I.	C.G.	H.G.
21.2	99.6	33.4	At1g34760	840380	GRF11 (GENERAL REGULATORY FACTOR 11)	Encodes a 14-3-3 protein. Binds H+-ATPase in response to blue light.	O.I.	C.G.	H.G.
15.8	99.5	35.6	At5g05710	830455	pleckstrin homology (PH) domain-containing protein	F:molecular_function unknown;P:unknown;C:cellular_component unknown;MOPFV	O.I.	C.G.	H.G.
14.9	99.4	48.8	At5g62280	836349	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
14.2	99.4	86.7	At1g12520	837808	ATCCS (COPPER CHAPERONE FOR SOD1)	Copper/zinc superoxide dismutase copper chaperone. Localized to the chloroplast. Expressed in roots and shoots. Up-regulated in response to copper and senescence. The AtACC activates all three CuZnSOD activities located in three different subcellular compartments. Contains three domains, central, ATX-1 like and C-terminal. ATX-1 like domain essential for the copper chaperone function of AtCCS in planta.	O.I.	C.G.	H.G.
14.0	99.4	96.4	At4g17730	827494	SYP23 (SYNTAXIN OF PLANTS 23)	member of SYP2 Gene Family	O.I.	C.G.	H.G.
13.0	99.4	72.2	At5g15850	831442	COL1 (constans-like 1)	Homologous to the flowering-time gene CONSTANS.	O.I.	C.G.	H.G.
12.9	99.3	92.7	At5g43580	834378	serine-type endopeptidase inhibitor	Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860.	O.I.	C.G.	H.G.
12.6	99.3	34.0	At5g03700	831753	PAN domain-containing protein	F:sugar binding;P:unknown;C:plasma membrane;P	O.I.	C.G.	H.G.
12.0	99.3	46.7	At1g54740	841915	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;OPMBF	O.I.	C.G.	H.G.
12.0	99.3	24.9	At1g73660	843701	protein kinase family protein	Encodes a protein with similarity to MAPKKKs. May function as a negative regulator of salt tolerance.	O.I.	C.G.	H.G.
11.5	99.3	75.7	At5g56100	835709	glycine-rich protein / oleosin	F:molecular_function unknown;P:lipid storage;C:monolayer-surrounded lipid storage body, integral to membrane, membrane;PB	O.I.	C.G.	H.G.
11.5	99.3	28.8	At5g49700	835033	DNA-binding protein-related	F:unknown;P:biological_process unknown;C:unknown;PMBF	O.I.	C.G.	H.G.
11.4	99.3	287.9	At2g05540	815103	glycine-rich protein	F:unknown;P:unknown;C:endomembrane system;MPBOFVA	O.I.	C.G.	H.G.
11.4	99.3	105.3	At4g34030	829549	MCCB (3-METHYLCROTONYL-COA CARBOXYLASE)	MCC-B is involved in leucine degradation in mitochondria. The active protein is a dimer of MCC-A and MCC-B. MCC-A is biotinylated whereas MCC-B is not.	O.I.	C.G.	H.G.
10.9	99.2	54.7	At1g18460	838426	lipase family protein	F:lipase activity;P:glycerol biosynthetic process, lipid metabolic process;C:unknown;MFPO	O.I.	C.G.	H.G.
10.2	99.2	43.4	At5g02540	831913	short-chain dehydrogenase/reductase (SDR) family protein	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA	O.I.	C.G.	H.G.
10.2	99.2	12.5	At5g07000	830591	ST2B (SULFOTRANSFERASE 2B)	Encodes a member of the sulfotransferase family of proteins. Although it has 85% amino acid identity with ST2A (At5g07010), this protein is not able to transfer a sulfate group to 11- or 12-hydroxyjasmonic acid in vitro. It may be able to act on structurally related jasmonates.	O.I.	C.G.	H.G.
10.1	99.2	36.9	At2g21950	816731	SKIP6 (SKP1 interacting partner 6)	Encodes an SKP1 interacting partner (SKIP6).	O.I.	C.G.	H.G.
9.8	99.1	78.6	At3g02380	821298	COL2 (constans-like 2)	homologous to the flowering-time gene CONSTANS (CO) encoding zinc-finger proteins	O.I.	C.G.	H.G.
9.7	99.1	76.8	At5g02760	831234	protein phosphatase 2C family protein / PP2C family protein	F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;PMOFBAV	O.I.	C.G.	H.G.
9.5	99.1	174.0	At2g32150	817774	haloacid dehalogenase-like hydrolase family protein	F:hydrolase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;OBPFAM	O.I.	C.G.	H.G.
9.3	99.1	108.7	At1g49600	841384	ATRBP47A (Arabidopsis thaliana RNA-binding protein 47a)	F:RNA binding;P:unknown;C:unknown;MOPFBVA	O.I.	C.G.	H.G.
9.3	99.1	39.8	At3g21870	821742	CYCP2	F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:unknown;FOMPB	O.I.	C.G.	H.G.
9.2	99.1	59.8	At1g14280	837989	PKS2 (PHYTOCHROME KINASE SUBSTRATE 2)	Encodes phytochrome kinase substrate 2. PKS proteins are critical for hypocotyl phototropism.	O.I.	C.G.	H.G.
9.0	99.1	163.5	At4g37300	829885	MEE59 (maternal effect embryo arrest 59)	F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;P	O.I.	C.G.	H.G.
8.8	99.0	244.7	At1g76490	843982	HMG1 (HYDROXY METHYLGLUTARYL COA REDUCTASE 1)	Encodes a 3-hydroxy-3-methylglutaryl coenzyme A reductase, which is involved in melavonate biosynthesis and performs the first committed step in isoprenoid biosynthesis. Expression is activated in dark in leaf tissue but not controlled by light in the root (confine	O.I.	C.G.	H.G.
8.8	99.0	103.4	At1g09570	837483	PHYA (PHYTOCHROME A)	Light-labile cytoplasmic red/far-red light photoreceptor involved in the regulation of photomorphogenesis. It exists in two inter-convertible forms: Pr and Pfr (active) and functions as a dimer.The N terminus carries a single tetrapyrrole chromophore, and the C terminus is involved in dimerization. It is the sole photoreceptor mediating the FR high irradiance response (HIR). Major regulator in red-light induction of phototropic enhancement. Involved in the regulation of de-etiolation. Involved in gravitropism and phototropism. Requires FHY1 for nuclear accumulation.	O.I.	C.G.	H.G.
8.6	99.0	119.5	At5g63190	836440	MA3 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF	O.I.	C.G.	H.G.
8.6	99.0	72.7	At4g32760	829412	protein transporter	F:protein transporter activity;P:intracellular protein transport, intra-Golgi vesicle-mediated transport;C:Golgi stack, plasma membrane;MOFPBVA	O.I.	C.G.	H.G.
8.6	99.0	33.9	At3g07220	819910	transcriptional activator, putative	F:transcription activator activity;P:biological_process unknown;C:cellular_component unknown;FMPO	O.I.	C.G.	H.G.

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GSM ID	-
Assay name	E-MEXP-1299-raw-cel-1519901992
GSE experiment	-

Microarray experiments to specifically-expressed genes

GSM ID - Assay name E-MEXP-1299-raw-cel-1519901992 GSE experiment -

GSM ID -

Assay name E-MEXP-1299-raw-cel-1519901992

GSE experiment -