Microarray experiments to specifically-expressed genes

GSM ID -
Assay name E-MEXP-1112-raw-cel-1590665325
GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
240.7100.0457.3At4g37220829876stress-responsive protein, putativeF:molecular_function unknown;P:response to fructose stimulus, response to sucrose stimulus, response to glucose stimulus, response to stress;C:cellular_component unknown;PO.I.C.G.H.G.
123.099.9181.8At1g08630837385THA1 (Threonine Aldolase 1)Encodes a threonine aldolase, involved in threonine degradation to glycine. Primarily expressed in seeds and seedlings.O.I.C.G.H.G.
111.399.9505.9At1g19530838540unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PO.I.C.G.H.G.
97.999.9399.5At3g61060825278AtPP2-A13 (Arabidopsis thaliana phloem protein 2-A13)F:carbohydrate binding;P:N-terminal protein myristoylation, response to wounding;C:unknown;PO.I.C.G.H.G.
94.799.9198.3At1g80160844356lactoylglutathione lyase family protein / glyoxalase I family proteinF:lactoylglutathione lyase activity;P:carbohydrate metabolic process;C:unknown;BPOO.I.C.G.H.G.
80.599.981.9At3g48020823957-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
79.999.9379.1At2g37750818352unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
79.899.9467.5At1g05340837033unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PFO.I.C.G.H.G.
75.899.9114.8At1g02340839300HFR1 (LONG HYPOCOTYL IN FAR-RED)Encodes a light-inducible, nuclear bHLH protein involved in phytochrome signaling. Mutants exhibit a long-hypocotyl phenotype only under far-red light but not under red light and are defective in other phytochrome A-related responses. Mutants also show blue light response defects. HFR1 interacts with COP1, co-localizes to the nuclear specks and is ubiquinated by COP1.O.I.C.G.H.G.
74.899.9315.3At3g60140825184DIN2 (DARK INDUCIBLE 2)Encodes a protein similar to beta-glucosidase and is a member of glycoside hydrolase family 1. Expression is induced after 24 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell.O.I.C.G.H.G.
70.999.9660.3At4g15610827238integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
69.599.9308.7At5g66170836749-F:molecular_function unknown;P:aging;C:cellular_component unknown;PBOAO.I.C.G.H.G.
66.699.8695.9At2g05540815103glycine-rich proteinF:unknown;P:unknown;C:endomembrane system;MPBOFVAO.I.C.G.H.G.
60.299.8274.3At2g38400818421AGT3 (ALANINE:GLYOXYLATE AMINOTRANSFERASE 3)alanine:glyoxylate aminotransferase 2 homolog (AGT3) mRNA,O.I.C.G.H.G.
58.499.8170.6At5g56100835709glycine-rich protein / oleosinF:molecular_function unknown;P:lipid storage;C:monolayer-surrounded lipid storage body, integral to membrane, membrane;PBO.I.C.G.H.G.
56.599.8788.4At1g73260843660trypsin and protease inhibitor family protein / Kunitz family proteinF:endopeptidase inhibitor activity;P:response to salt stress;C:mitochondrion;POO.I.C.G.H.G.
56.099.8904.4At4g35770829730SEN1 (SENESCENCE 1)Senescence-associated gene that is strongly induced by phosphate starvation. Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant.O.I.C.G.H.G.
55.599.8171.4At4g32870829423unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOO.I.C.G.H.G.
53.399.8256.7At1g06570837168PDS1 (PHYTOENE DESATURATION 1)Mutation of the PDS1 locus disrupts the activity of p-hydroxyphenylpyruvate dioxygenase (HPPDase), the first committed step in the synthesis of both plastoquinone and tocopherols in plants.O.I.C.G.H.G.
53.099.8118.1At2g31945817753unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
51.899.823.7At1g21360838735GLTP2 (glycolipid transfer protein 2)F:glycolipid transporter activity, glycolipid binding;P:glycolipid transport;C:cytoplasm;PO.I.C.G.H.G.
48.999.8180.7At5g43580834378serine-type endopeptidase inhibitorPredicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860.O.I.C.G.H.G.
47.799.8225.8At1g10070837543ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2)Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.O.I.C.G.H.G.
47.199.8344.3At3g01520821122universal stress protein (USP) family proteinF:molecular_function unknown;P:N-terminal protein myristoylation, response to stress;C:plasma membrane;BPAMOFO.I.C.G.H.G.
47.099.8268.9At1g80180844358unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PO.I.C.G.H.G.
45.699.8205.5At3g06850819869BCE2dihydrolipoamide branched chain acyltransferaseO.I.C.G.H.G.
42.099.832.7At1g55240841967unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPO.I.C.G.H.G.
40.799.8125.2At3g14770820705nodulin MtN3 family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, integral to membrane, membrane;PMOO.I.C.G.H.G.
39.899.881.8At1g76410843974ATL8F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVO.I.C.G.H.G.
39.399.8351.5At1g12780837834UGE1 (UDP-D-glucose/UDP-D-galactose 4-epimerase 1)Encodes a UDP-glucose epimerase that catalyzes the interconversion of the sugar nucleotides UDP-glucose UDP-galactose via a UDP-4-keto-hexose intermediate. Responsive to stress.O.I.C.G.H.G.
39.199.8160.7At1g64660842774ATMGL (ARABIDOPSIS THALIANA METHIONINE GAMMA-LYASE)Encodes a functional methionine gamma-lyase, a cytosolic enzyme catalyzes the degradation of methionine into methanethiol, alpha-ketobutyrate and ammonia. The catabolism of excess methionine is important to methionine homeostasis.O.I.C.G.H.G.
38.799.8315.0At5g47450834794AtTIP2Tonoplast intrinsic protein, transports ammonium (NH3) and methylammonium across the tonoplast membrane, gene expression shows diurnal regulation and is upregulated by ammonium (NH3).O.I.C.G.H.G.
36.799.7152.2At1g72060843537serine-type endopeptidase inhibitorF:serine-type endopeptidase inhibitor activity;P:response to oxidative stress;C:endomembrane system;PO.I.C.G.H.G.
34.299.7207.6At5g54080835494HGO (HOMOGENTISATE 1,2-DIOXYGENASE)homogentisate 1,2-dioxygenaseO.I.C.G.H.G.
31.099.787.5At1g78290844164--O.I.C.G.H.G.
30.899.746.9At1g23120838920major latex protein-related / MLP-relatedF:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;PO.I.C.G.H.G.
30.799.788.7At5g44920834522Toll-Interleukin-Resistance (TIR) domain-containing proteinF:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:endoplasmic reticulum;PBOO.I.C.G.H.G.
29.499.7114.8At5g44610834489MAP18 (Microtubule-associated Protein 18)Encodes a protein of unknown function with seven repeated VEEKK motifs. RNAi and overexpression experiments suggest that the gene is not involved in cell division but might be consequential for cell shape of epidermal and cortical cells. The protein encoded by this gene binds to cortical microtubules and inhibits tubulin polymerization.O.I.C.G.H.G.
28.799.710.8At2g04038814936AtbZIP48 (Arabidopsis thaliana basic leucine-zipper 48)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOFO.I.C.G.H.G.
28.499.712.0At1g15030838068-Encodes a Cysteine-rich peptide (CRP) family proteinO.I.C.G.H.G.
27.499.762.7At3g15500820789ANAC055 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 55)Encodes an ATAF-like NAC-domain transcription factor that doesn't contain C-terminal sequences shared by CUC1, CUC2 and NAM. Note: this protein (AtNAC3) is not to be confused with the protein encoded by locus AT3G29035, which, on occasion, has also been referred to as AtNAC3.O.I.C.G.H.G.
27.299.7272.5At2g20670816595unknown proteinF:unknown;P:unknown;C:chloroplast;POO.I.C.G.H.G.
27.299.7162.4At4g34030829549MCCB (3-METHYLCROTONYL-COA CARBOXYLASE)MCC-B is involved in leucine degradation in mitochondria. The active protein is a dimer of MCC-A and MCC-B. MCC-A is biotinylated whereas MCC-B is not.O.I.C.G.H.G.
27.299.783.5At1g214008387392-oxoisovalerate dehydrogenase, putative / 3-methyl-2-oxobutanoate dehydrogenase, putative / branched-chain alpha-keto acid dehydrogenase E1 alpha subunit, putativeF:oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity;P:metabolic process;C:unknown;BOMFPAO.I.C.G.H.G.
27.299.755.1At3g20340821578-Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.O.I.C.G.H.G.
26.899.7123.3At1g07040837215unknown proteinF:unknown;P:biological_process unknown;C:chloroplast;BOPO.I.C.G.H.G.
26.399.762.2At2g45210819129auxin-responsive protein-relatedF:molecular_function unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.
26.199.730.8At1g65510842863unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:endomembrane system;PO.I.C.G.H.G.
25.299.6200.7At1g15380838107lactoylglutathione lyase family protein / glyoxalase I family proteinF:lactoylglutathione lyase activity;P:carbohydrate metabolic process;C:cellular_component unknown;BPOMFAO.I.C.G.H.G.
25.199.682.0At1g55510841998BCDH BETA1 (BRANCHED-CHAIN ALPHA-KETO ACID DECARBOXYLASE E1 BETA SUBUNIT)branched-chain alpha-keto acid decarboxylase E1 betaO.I.C.G.H.G.
24.999.6126.1At3g45300823668IVD (ISOVALERYL-COA-DEHYDROGENASE)Encodes isovaleryl-coenzyme a dehydrogenase.O.I.C.G.H.G.
23.999.6710.6At1g75750843908GASA1 (GAST1 PROTEIN HOMOLOG 1)GA-responsive GAST1 protein homolog regulated by BR and GA antagonistically. Possibly involved in cell elongation based on expression dataO.I.C.G.H.G.
23.799.6108.7At1g15040838069glutamine amidotransferase-relatedF:hydrolase activity;P:glutamine metabolic process;C:cellular_component unknown;BOPAFMO.I.C.G.H.G.
23.599.615.2At3g55790824745unknown proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPBOFVO.I.C.G.H.G.
23.299.6281.1At3g61260825298DNA-binding family protein / remorin family proteinF:binding;P:biological_process unknown;C:plasma membrane, vacuole;OBMFPVAO.I.C.G.H.G.
22.099.6553.9At1g76180843950ERD14 (EARLY RESPONSE TO DEHYDRATION 14)Encodes a dehydrin protein whose expression is induced early on in response to dehydration stress. This gene's expression to cold occurs in two waves, with early induction occurring within 1 h and secondary induction occurring 5 h after the beginning of cold stress. Expression is also induced in response to ABA but not in response to 2,4-D, BA, and GA3. ERD14 protein is capable of binding Ca2+, especially when the protein is phosphorylated.O.I.C.G.H.G.
22.099.6103.3At1g10140837551-F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;POO.I.C.G.H.G.
21.699.692.3At4g28040828919nodulin MtN21 family proteinF:unknown;P:unknown;C:endomembrane system, membrane;PBOAMO.I.C.G.H.G.
21.199.6196.4At4g39675830122unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
21.099.6417.3At1g62480842545vacuolar calcium-binding protein-relatedF:unknown;P:response to cadmium ion, response to salt stress;C:cellular_component unknown;OMBFPVAO.I.C.G.H.G.
21.099.623.1At4g23450828444zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:N-terminal protein myristoylation;C:chloroplast;PMOFVO.I.C.G.H.G.
20.899.6149.8At1g03090838362MCCAMCCA is the biotinylated subunit of the dimer MCCase, which is involved in leucine degradation. Both subunits are nuclear coded and the active enzyme is located in the mitochondrion.O.I.C.G.H.G.
20.699.637.7At5g04200830299AtMC9 (metacaspase 9)F:cysteine-type peptidase activity;P:proteolysis;C:apoplast;FPBOAO.I.C.G.H.G.
20.499.620.3At5g14470831298GHMP kinase-relatedF:kinase activity, phosphotransferase activity, alcohol group as acceptor, galactokinase activity, ATP binding;P:metabolic process, phosphorylation;C:cytoplasm;BOPAMO.I.C.G.H.G.
20.099.691.3At5g53970835480aminotransferase, putativeencodes tyrosine aminotransferase which is strongly induced upon aging and coronatine treatmentO.I.C.G.H.G.
19.999.6359.8At1g32460840140unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
19.899.6682.3At4g30270829150MERI5B (meristem-5)encodes a protein similar to endo xyloglucan transferase in sequence. It is also very similar to BRU1 in soybean, which is involved in brassinosteroid response.O.I.C.G.H.G.
19.799.6382.4At3g55770824743LIM domain-containing proteinF:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOPFO.I.C.G.H.G.
19.699.6315.6At3g47340823888ASN1 (GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1)encodes a glutamine-dependent asparagine synthetase, the predicted ASN1 peptide contains a purF-type glutamine-binding domain, and is expressed predominantly in shoot tissues, where light has a negative effect on its mRNA accumulation. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell.O.I.C.G.H.G.
19.699.6153.2At5g49450835005AtbZIP1 (Arabidopsis thaliana basic leucine-zipper 1)F:transcription factor activity, protein heterodimerization activity, DNA binding;P:anther dehiscence, regulation of transcription, DNA-dependent;C:nucleus, chloroplast;PMOO.I.C.G.H.G.
19.599.6284.1At1g60740842368peroxiredoxin type 2, putativeF:oxidoreductase activity, antioxidant activity;P:cell redox homeostasis;C:plasma membrane;OBFPMAO.I.C.G.H.G.
18.899.5313.1At4g35750829728Rho-GTPase-activating protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOO.I.C.G.H.G.
18.499.5279.9At5g28050832875cytidine/deoxycytidylate deaminase family proteinF:hydrolase activity, zinc ion binding, catalytic activity;P:pyrimidine ribonucleotide metabolic process, pyrimidine deoxyribonucleoside interconversion, deoxyribose phosphate metabolic process, anaerobic respiration;C:cellular_component unknown;BOFMPAO.I.C.G.H.G.
18.499.534.4At4g13030826917unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;BPMFOO.I.C.G.H.G.
18.399.5288.8At5g09440830803EXL4 (EXORDIUM LIKE 4)F:molecular_function unknown;P:biological_process unknown;C:membrane;PBO.I.C.G.H.G.
18.299.5207.2At2g38800818462calmodulin-binding protein-relatedF:calmodulin binding;P:unknown;C:cellular_component unknown;BOMFPVAO.I.C.G.H.G.
18.299.536.1At5g42200834225zinc finger (C3HC4-type RING finger) family proteinF:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVO.I.C.G.H.G.
17.899.584.6At5g14240831274-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPBO.I.C.G.H.G.
17.599.5185.8At4g32150829347ATVAMP711 (ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 711)AtVAMP711 is a member of Synaptobrevin-like AtVAMP7C, v-SNARE (soluble N-ethyl-maleimide sensitive factor attachment protein receptors) protein family. SNAREs have been divided into four subgroups: Qa-, Qb-, Qc- and R-SNAREs. R-SNAREs are classified into three groups, the Sec22-, YKT6- and VAMP7-like R-SNAREs. One R-SNARE and three Q-SNAREs (one of each subgroup) form the trans-SNARE complex, which governs specific membrane fusions. VAMP7 proteins consist of three distinct domain, the N-terminal longin-domain (LD), the SNARE motif (SNM) and a transmembrane domain. In spite of the high similarities among the VAMP7 proteins, they show different subcellular localizations. VAMP7C is vacuolar-localized and its LD is essential for the correct localization. Generally, it is suggested that the complete LD is the determinant of subcellular sorting in both animal and plant R-SNAREs.O.I.C.G.H.G.
17.299.5118.4At5g06370830525NC domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PBMOO.I.C.G.H.G.
16.999.552.9At1g02860839559NLA (nitrogen limitation adaptation)Encodes a likely ubiquitin E3 ligase with RING and SPX domains that is involved in mediating immune responses.O.I.C.G.H.G.
16.899.584.8At2g18050816317HIS1-3 (HISTONE H1-3)encodes a structurally divergent linker histone whose gene expression is induced by dehydration and ABA.O.I.C.G.H.G.
16.299.5691.1At2g33830817950dormancy/auxin associated family proteinF:unknown;P:unknown;C:cellular_component unknown;PO.I.C.G.H.G.
16.199.5632.6At3g15450820784unknown proteinF:molecular_function unknown;P:unknown;C:unknown;PBOMFO.I.C.G.H.G.
15.999.5110.2At1g58180842185carbonic anhydrase family protein / carbonate dehydratase family proteinF:carbonate dehydratase activity, zinc ion binding;P:carbon utilization;C:mitochondrion;BOPFMAO.I.C.G.H.G.
15.999.564.5At5g66650836797unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOAO.I.C.G.H.G.
15.899.5204.4At2g36320818205zinc finger (AN1-like) family proteinF:DNA binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOVFO.I.C.G.H.G.
15.799.5136.5At1g11530837696ATCXXS1 (C-terminal cysteine residue is changed to a serine 1)Encodes a monocysteinic thioredoxin, thioredoxin in which the second cysteine of the redox site is replaced by a serine, with low disulfide reductase but efficient disulfide isomerase activity.O.I.C.G.H.G.
15.599.5223.0At2g32150817774haloacid dehalogenase-like hydrolase family proteinF:hydrolase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;OBPFAMO.I.C.G.H.G.
15.599.5204.7At3g26510822258octicosapeptide/Phox/Bem1p (PB1) domain-containing proteinF:unknown;P:biological_process unknown;C:unknown;POFMBVO.I.C.G.H.G.
15.499.5600.2At1g64230842728ubiquitin-conjugating enzyme, putativeF:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:plasma membrane;MFOPVO.I.C.G.H.G.
15.199.4111.0At4g14010827037RALFL32 (ralf-like 32)Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.O.I.C.G.H.G.
15.199.448.2At3g19860821523basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOFBVO.I.C.G.H.G.
15.199.422.3At5g49440835004unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
14.999.4309.0At2g37130818289peroxidase 21 (PER21) (P21) (PRXR5)F:electron carrier activity, peroxidase activity, heme binding;P:defense response to fungus;C:endomembrane system;PFOO.I.C.G.H.G.
14.999.427.2At4g18510827583CLE2 (CLAVATA3/ESR-RELATED)CLE2, putative ligand, member of large gene family homologous to Clavata3O.I.C.G.H.G.
14.899.4230.8At1g17860838365trypsin and protease inhibitor family protein / Kunitz family proteinF:endopeptidase inhibitor activity;P:biological_process unknown;C:apoplast, cell wall;POO.I.C.G.H.G.
14.099.4412.0At3g51730824336saposin B domain-containing proteinF:molecular_function unknown;P:lipid metabolic process;C:vacuole;MOPO.I.C.G.H.G.
14.099.469.0At2g44010819006unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
13.899.4134.4At1g29970839876RPL18AA (60S RIBOSOMAL PROTEIN L18A-1)F:unknown;P:unknown;C:unknown;PO.I.C.G.H.G.



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