CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID -

Assay name E-MEXP-1094-raw-cel-1379507473

GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
109.4 99.9 45.5 At4g09420 826524 disease resistance protein (TIR-NBS class), putative F:transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PBMO O.I. C.G. H.G.
54.5 99.8 64.8 At4g16563 827356 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:plant-type cell wall;PMFO O.I. C.G. H.G.
48.3 99.8 50.0 At4g27730 828887 OPT6 (OLIGOPEPTIDE TRANSPORTER 1) oligopeptide transporter O.I. C.G. H.G.
48.0 99.8 64.6 At4g36410 829793 UBC17 (UBIQUITIN-CONJUGATING ENZYME 17) ubiquitin-conjugating enzyme O.I. C.G. H.G.
41.1 99.8 107.5 At5g43190 834337 F-box family protein (FBX6) F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;PFO O.I. C.G. H.G.
40.4 99.8 409.1 At5g44130 834436 FLA13 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 13 PRECURSOR) F:molecular_function unknown;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane, plant-type cell wall;PBOMA O.I. C.G. H.G.
37.7 99.7 88.5 At1g02300 839576 cathepsin B-like cysteine protease, putative F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis, regulation of catalytic activity;C:endomembrane system;MOPVBAF O.I. C.G. H.G.
36.5 99.7 357.3 At1g15670 838136 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBOAFV O.I. C.G. H.G.
35.7 99.7 140.6 At5g01810 830556 CIPK15 (CBL-INTERACTING PROTEIN KINASE 15) Encodes a CBL-interacting serine/threonine protein kinase, also has similarities to SOS2 kinase. O.I. C.G. H.G.
33.7 99.7 37.6 At3g60290 825200 oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biosynthetic process;C:cellular_component unknown;POBFM O.I. C.G. H.G.
33.3 99.7 42.0 At5g07100 830601 WRKY26 Encodes WRKY DNA-binding protein 26 (WRKY26). O.I. C.G. H.G.
32.5 99.7 42.0 At2g42280 818829 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PM O.I. C.G. H.G.
31.9 99.7 90.3 At2g28630 817412 KCS12 (3-KETOACYL-COA SYNTHASE 12) Encodes KCS12, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). O.I. C.G. H.G.
31.6 99.7 34.8 At4g39070 830062 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:response to chitin, regulation of transcription;C:intracellular;POM O.I. C.G. H.G.
31.4 99.7 93.5 At5g58650 835979 PSY1 (plant peptide containing sulfated tyrosine 1) Encodes PSY1, an18-aa tyrosine-sulfated glycopeptide that promotes cellular proliferation and expansion. PSY1 is widely expressed in various tissues, including shoot apical meristem, and is highly up-regulated by wounding. Perception of PSY1 depends on At1g72300, a leucine-rich repeat receptor kinase (LRR-RK). O.I. C.G. H.G.
31.1 99.7 207.5 At4g22470 828342 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;MBOPFVA O.I. C.G. H.G.
29.9 99.7 63.6 At5g03730 831748 CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1) Homologous to the RAF family of serine/threonine protein kinases. Negative regulator in the ethylene signal transduction pathway. Interacts with the putative ethylene receptors ETR1 and ERS. Constitutively expressed. O.I. C.G. H.G.
29.9 99.7 23.2 At3g28320 822460 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO O.I. C.G. H.G.
29.0 99.7 51.8 At1g09420 837465 G6PD4 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 4) Encodes a protein similar to glucose-6-phosphate dehydrogenase but, based on amino acid differences in the active site and lack of activity, does not encode a functional G6PDH. The amino acid sequence for the consensus sequence of the G6PDH active site (DHYLGKE) differs in three places in this protein. gc exon splice site at 20574 is based on protein alignment, and is not confirmed experimentally. O.I. C.G. H.G.
28.7 99.7 60.3 At5g23340 832398 - F:unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBV O.I. C.G. H.G.
27.8 99.7 105.4 At2g42580 818858 TTL3 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 3) Encodes a member of the TTL family and contains a thioredoxin like domain and three tandom TPRs. Interacts physically with BRL2/VH1 and appears to play a role in brassiosteroid and auxin signaling. O.I. C.G. H.G.
27.4 99.7 367.3 At3g13750 820584 BGAL1 (Beta galactosidase 1) beta-galactosidase, glycosyl hydrolase family 35 O.I. C.G. H.G.
27.2 99.7 61.5 At1g22740 838880 RABG3B GTP-binding protein Rab7 O.I. C.G. H.G.
26.5 99.7 69.5 At1g54740 841915 - F:molecular_function unknown;P:biological_process unknown;C:unknown;OPMBF O.I. C.G. H.G.
26.4 99.7 44.5 At3g19850 821522 phototropic-responsive NPH3 family protein F:protein binding, signal transducer activity;P:response to light stimulus;C:endomembrane system;P O.I. C.G. H.G.
25.5 99.7 25.4 At1g31350 840024 F-box family protein F:molecular_function unknown;P:unknown;C:cellular_component unknown;PMBO O.I. C.G. H.G.
24.4 99.6 67.4 At1g02660 839544 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;MOFPBV O.I. C.G. H.G.
24.4 99.6 34.6 At1g49000 841322 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
24.2 99.6 197.7 At4g36670 829820 mannitol transporter, putative F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMOPAV O.I. C.G. H.G.
23.0 99.6 35.3 At2g42040 818804 - F:molecular_function unknown;P:biological_process unknown;C:unknown;PMO O.I. C.G. H.G.
22.5 99.6 93.6 At2g39400 818525 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:unknown;BOPMFVA O.I. C.G. H.G.
22.5 99.6 46.2 At3g21080 821660 ABC transporter-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
22.4 99.6 78.9 At5g28770 832990 BZO2H3 bZIP protein BZO2H3 mRNA, partial cds O.I. C.G. H.G.
22.3 99.6 218.4 At5g55930 835691 OPT1 (OLIGOPEPTIDE TRANSPORTER 1) oligopeptide transporter O.I. C.G. H.G.
21.1 99.6 137.4 At1g25560 839143 TEM1 (TEMPRANILLO 1) Encodes a member of the RAV transcription factor family that contains AP2 and B3 binding domains. Involved in the regulation of flowering under long days. Loss of function results in early flowering. Overexpression causes late flowering and repression of expression of FT. O.I. C.G. H.G.
21.1 99.6 113.2 At5g15410 831393 DND1 (DEFENSE NO DEATH 1) 'defense, no death' gene (DND1) encodes a mutated cyclic nucleotide-gated cation channel; Same as CNGC2 (article ID 229): Cyclic nucleotide gated channel, activated by cAMP, conducts K+ and other monovalent cations but excludes Na+, does not contain the GYG amino acid sequence found in other channels with this conductivity profile. Conducts Ca2+ into cells which is linked to the generation of NO and the NO signaling pathway involved in the innate immune response to pathogens. O.I. C.G. H.G.
20.7 99.6 39.4 At1g05810 837091 RABA5E (RAB GTPASE HOMOLOG A5E) F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:chloroplast;MOFPBVA O.I. C.G. H.G.
20.5 99.6 31.9 At3g61150 825287 HDG1 (HOMEODOMAIN GLABROUS 1) Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. O.I. C.G. H.G.
20.4 99.6 56.1 At3g06080 819781 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
20.2 99.6 230.3 At3g15630 820805 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
20.2 99.6 73.2 At3g63380 825513 calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA12) F:calmodulin binding, calcium-transporting ATPase activity;P:calcium ion transport, cation transport, metabolic process, ATP biosynthetic process;C:membrane;BMOFPAV O.I. C.G. H.G.
20.1 99.6 37.8 At1g50040 841428 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMBV O.I. C.G. H.G.
20.0 99.6 150.3 At5g05440 830427 unknown protein F:molecular_function unknown;P:unknown;C:cellular_component unknown;PBO O.I. C.G. H.G.
19.9 99.6 112.8 At3g45300 823668 IVD (ISOVALERYL-COA-DEHYDROGENASE) Encodes isovaleryl-coenzyme a dehydrogenase. O.I. C.G. H.G.
19.9 99.6 26.6 At3g50650 824228 scarecrow-like transcription factor 7 (SCL7) F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PMFOBV O.I. C.G. H.G.
19.8 99.6 185.8 At5g62360 836357 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
19.8 99.6 83.6 At5g42900 834301 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
19.8 99.6 19.8 At1g78270 844162 AtUGT85A4 (UDP-glucosyl transferase 85A4) F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, glucuronosyltransferase activity;P:metabolic process;C:cellular_component unknown;PMVBFO O.I. C.G. H.G.
19.3 99.6 106.6 At4g20860 827834 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:response to cyclopentenone;C:endomembrane system;BFPOAM O.I. C.G. H.G.
19.3 99.6 76.2 At2g31800 817737 ankyrin protein kinase, putative F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:regulation of signal transduction, protein amino acid phosphorylation;C:unknown;MOPBFVA O.I. C.G. H.G.
19.1 99.6 42.4 At1g61380 842432 SD1-29 (S-DOMAIN-1 29) F:carbohydrate binding, protein kinase activity, kinase activity;P:protein amino acid autophosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
19.0 99.5 58.4 At2g17880 816298 DNAJ heat shock protein, putative F:heat shock protein binding;P:protein folding;C:chloroplast;BOMFPAV O.I. C.G. H.G.
18.8 99.5 177.1 At2g31810 817738 acetolactate synthase small subunit, putative F:acetolactate synthase activity, amino acid binding;P:branched chain family amino acid biosynthetic process;C:chloroplast;OBFAP O.I. C.G. H.G.
18.8 99.5 70.3 At4g00330 828125 CRCK2 high overall homology to CRCK1 O.I. C.G. H.G.
18.7 99.5 36.1 At3g15060 820735 AtRABA1g (Arabidopsis Rab GTPase homolog A1g) F:GTP binding;P:response to cadmium ion;C:unknown;MOFPBAV O.I. C.G. H.G.
18.3 99.5 279.7 At1g52200 841650 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:plasma membrane;PFMO O.I. C.G. H.G.
18.3 99.5 105.4 At5g03040 831696 iqd2 (IQ-domain 2) F:calmodulin binding;P:biological_process unknown;C:plasma membrane;PMOF O.I. C.G. H.G.
18.3 99.5 88.5 At4g03510 825654 RMA1 RMA1 encodes a novel 28 kDa protein with a RING finger motif and a C-terminal membrane-anchoring domain that is involved in the secretory pathway. O.I. C.G. H.G.
17.8 99.5 295.6 At5g56870 835789 BGAL4 (beta-galactosidase 4) F:beta-galactosidase activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:endomembrane system, beta-galactosidase complex;PBMFOA O.I. C.G. H.G.
17.7 99.5 240.7 At1g62510 842548 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;OBPMVFA O.I. C.G. H.G.
17.7 99.5 9.3 At4g18980 827634 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
17.5 99.5 59.9 At5g08520 830751 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POMFB O.I. C.G. H.G.
17.4 99.5 66.3 At3g57410 824908 VLN3 (VILLIN 3) Encodes a protein with high homology to animal villin. O.I. C.G. H.G.
17.1 99.5 225.3 At2g39570 818542 ACT domain-containing protein F:amino acid binding;P:metabolic process;C:unknown;POB O.I. C.G. H.G.
17.1 99.5 92.0 At1g30720 839952 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOA O.I. C.G. H.G.
17.0 99.5 134.9 At1g10070 837543 ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant. O.I. C.G. H.G.
16.7 99.5 493.8 At4g35770 829730 SEN1 (SENESCENCE 1) Senescence-associated gene that is strongly induced by phosphate starvation. Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant. O.I. C.G. H.G.
16.6 99.5 126.4 At5g39580 833954 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:defense response to fungus, N-terminal protein myristoylation;C:endomembrane system;PFO O.I. C.G. H.G.
16.3 99.5 26.3 At5g44910 834521 Toll-Interleukin-Resistance (TIR) domain-containing protein F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P O.I. C.G. H.G.
16.2 99.5 57.8 At5g46050 834646 PTR3 (PEPTIDE TRANSPORTER 3) Encodes a di- and tri-peptide transporter involved in responses to wounding, virulent bacterial pathogens, and high NaCl concentrations. The protein is predicted to have 12 transmembrane helicies. O.I. C.G. H.G.
16.2 99.5 29.9 At1g64380 842745 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4. O.I. C.G. H.G.
16.0 99.5 134.4 At5g21170 832243 5'-AMP-activated protein kinase beta-2 subunit, putative F:AMP-activated protein kinase activity;P:N-terminal protein myristoylation;C:chloroplast;MFPOB O.I. C.G. H.G.
16.0 99.5 74.5 At4g17245 827437 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV O.I. C.G. H.G.
15.8 99.5 99.2 At5g16340 831495 AMP-binding protein, putative F:catalytic activity;P:metabolic process;C:unknown;BOMFPAV O.I. C.G. H.G.
15.7 99.5 274.9 At5g64120 836533 peroxidase, putative encodes a cell wall bound peroxidase that is induced by hypo-osmolarity O.I. C.G. H.G.
15.7 99.5 207.3 At3g10985 2745879 SAG20 (SENESCENCE ASSOCIATED GENE 20) A senescence-associated gene whose expression is induced in response to treatment with Nep1, a fungal protein that causes necrosis. O.I. C.G. H.G.
15.7 99.5 96.1 At2g22860 816817 ATPSK2 (PHYTOSULFOKINE 2 PRECURSOR) Phytosulfokine 2 precursor, coding for a unique plant peptide growth factor. O.I. C.G. H.G.
15.7 99.5 63.5 At5g18630 831981 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:endomembrane system;PFOBMV O.I. C.G. H.G.
15.3 99.4 203.5 At1g28330 839729 DYL1 (DORMANCY-ASSOCIATED PROTEIN-LIKE 1) dormancy-associated protein (DRM1) O.I. C.G. H.G.
15.2 99.4 280.3 At5g14920 831344 gibberellin-regulated family protein F:unknown;P:response to gibberellin stimulus;C:endomembrane system;MBOFPVA O.I. C.G. H.G.
14.7 99.4 26.8 At4g24240 828525 WRKY7 Encodes a Ca-dependent calmodulin binding protein. Sequence similarity to the WRKY transcription factor gene family. O.I. C.G. H.G.
14.6 99.4 219.1 At4g12480 826860 pEARLI 1 a putative lipid transfer protein, vernalization-responsive and cold-induced O.I. C.G. H.G.
14.5 99.4 299.6 At3g30775 822833 ERD5 (EARLY RESPONSIVE TO DEHYDRATION 5) Encodes a proline oxidase that is predicted to localize to the inner mitochondrial membrane, its mRNA expression induced by high levels of Al and by osmotic stress. The promoter contains an L-proline-inducible element. O.I. C.G. H.G.
14.4 99.4 169.4 At5g40450 834043 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast, plasma membrane;MOBFPAV O.I. C.G. H.G.
14.4 99.4 34.9 At3g57800 825530 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFB O.I. C.G. H.G.
14.3 99.4 114.2 At3g59350 825104 serine/threonine protein kinase, putative F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
14.3 99.4 62.8 At4g21680 828255 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:plasma membrane, membrane;BPMOF O.I. C.G. H.G.
14.3 99.4 48.4 At3g60980 825270 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:response to oxidative stress;C:unknown;PO O.I. C.G. H.G.
14.3 99.4 17.7 At5g04310 830310 pectate lyase family protein F:pectate lyase activity;P:biological_process unknown;C:anchored to membrane;BPFO O.I. C.G. H.G.
14.2 99.4 337.5 At5g49360 834996 BXL1 (BETA-XYLOSIDASE 1) Encodes a bifunctional {beta}-D-xylosidase/{alpha}-L-arabinofuranosidase required for pectic arabinan modification. Located in the extracellular matrix. Gene is expressed specifically in tissues undergoing secondary wall thickening. This is a member of glycosyl hydrolase family 3 and has six other closely related members. O.I. C.G. H.G.
14.2 99.4 159.6 At5g51070 835180 ERD1 (EARLY RESPONSIVE TO DEHYDRATION 1) ATP-dependent Clp protease regulatory subunit O.I. C.G. H.G.
14.2 99.4 17.7 At3g03000 821161 calmodulin, putative Calmodulin like protein localized in the plant vacuolar compartment with a function of binding and modifying the activity of a tonoplast transporter (AtNHX1) from within the vacuole in a Ca+2- and pH-dependent manner O.I. C.G. H.G.
14.1 99.4 109.3 At3g19680 821505 unknown protein F:unknown;P:unknown;C:plasma membrane;OPMBF O.I. C.G. H.G.
14.1 99.4 78.0 At1g65390 842851 ATPP2-A5 (ARABIDOPSIS THALIANA PHLOEM PROTEIN 2 A5) F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane, chloroplast;PB O.I. C.G. H.G.
13.9 99.4 191.7 At2g36320 818205 zinc finger (AN1-like) family protein F:DNA binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOVF O.I. C.G. H.G.
13.6 99.4 157.7 At4g17870 827510 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
13.6 99.4 51.7 At1g33050 840200 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBMFP O.I. C.G. H.G.
13.6 99.4 26.3 At5g06570 830545 hydrolase F:hydrolase activity;P:metabolic process;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
13.5 99.4 163.0 At4g15530 827226 PPDK (pyruvate orthophosphate dikinase) The product of this long transcript was shown to be targeted to the chloroplast, whereas the shorter transcript (no targeting sequence) accumulates in the cytosol. They were also found in slightly different tissues. O.I. C.G. H.G.
13.4 99.4 149.2 At3g11780 820352 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:vacuole;FPO O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
109.4	99.9	45.5	At4g09420	826524	disease resistance protein (TIR-NBS class), putative	F:transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PBMO	O.I.	C.G.	H.G.
54.5	99.8	64.8	At4g16563	827356	aspartyl protease family protein	F:aspartic-type endopeptidase activity;P:proteolysis;C:plant-type cell wall;PMFO	O.I.	C.G.	H.G.
48.3	99.8	50.0	At4g27730	828887	OPT6 (OLIGOPEPTIDE TRANSPORTER 1)	oligopeptide transporter	O.I.	C.G.	H.G.
48.0	99.8	64.6	At4g36410	829793	UBC17 (UBIQUITIN-CONJUGATING ENZYME 17)	ubiquitin-conjugating enzyme	O.I.	C.G.	H.G.
41.1	99.8	107.5	At5g43190	834337	F-box family protein (FBX6)	F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;PFO	O.I.	C.G.	H.G.
40.4	99.8	409.1	At5g44130	834436	FLA13 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 13 PRECURSOR)	F:molecular_function unknown;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane, plant-type cell wall;PBOMA	O.I.	C.G.	H.G.
37.7	99.7	88.5	At1g02300	839576	cathepsin B-like cysteine protease, putative	F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis, regulation of catalytic activity;C:endomembrane system;MOPVBAF	O.I.	C.G.	H.G.
36.5	99.7	357.3	At1g15670	838136	kelch repeat-containing F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBOAFV	O.I.	C.G.	H.G.
35.7	99.7	140.6	At5g01810	830556	CIPK15 (CBL-INTERACTING PROTEIN KINASE 15)	Encodes a CBL-interacting serine/threonine protein kinase, also has similarities to SOS2 kinase.	O.I.	C.G.	H.G.
33.7	99.7	37.6	At3g60290	825200	oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biosynthetic process;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
33.3	99.7	42.0	At5g07100	830601	WRKY26	Encodes WRKY DNA-binding protein 26 (WRKY26).	O.I.	C.G.	H.G.
32.5	99.7	42.0	At2g42280	818829	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PM	O.I.	C.G.	H.G.
31.9	99.7	90.3	At2g28630	817412	KCS12 (3-KETOACYL-COA SYNTHASE 12)	Encodes KCS12, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).	O.I.	C.G.	H.G.
31.6	99.7	34.8	At4g39070	830062	zinc finger (B-box type) family protein	F:transcription factor activity, zinc ion binding;P:response to chitin, regulation of transcription;C:intracellular;POM	O.I.	C.G.	H.G.
31.4	99.7	93.5	At5g58650	835979	PSY1 (plant peptide containing sulfated tyrosine 1)	Encodes PSY1, an18-aa tyrosine-sulfated glycopeptide that promotes cellular proliferation and expansion. PSY1 is widely expressed in various tissues, including shoot apical meristem, and is highly up-regulated by wounding. Perception of PSY1 depends on At1g72300, a leucine-rich repeat receptor kinase (LRR-RK).	O.I.	C.G.	H.G.
31.1	99.7	207.5	At4g22470	828342	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;MBOPFVA	O.I.	C.G.	H.G.
29.9	99.7	63.6	At5g03730	831748	CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1)	Homologous to the RAF family of serine/threonine protein kinases. Negative regulator in the ethylene signal transduction pathway. Interacts with the putative ethylene receptors ETR1 and ERS. Constitutively expressed.	O.I.	C.G.	H.G.
29.9	99.7	23.2	At3g28320	822460	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO	O.I.	C.G.	H.G.
29.0	99.7	51.8	At1g09420	837465	G6PD4 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 4)	Encodes a protein similar to glucose-6-phosphate dehydrogenase but, based on amino acid differences in the active site and lack of activity, does not encode a functional G6PDH. The amino acid sequence for the consensus sequence of the G6PDH active site (DHYLGKE) differs in three places in this protein. gc exon splice site at 20574 is based on protein alignment, and is not confirmed experimentally.	O.I.	C.G.	H.G.
28.7	99.7	60.3	At5g23340	832398	-	F:unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBV	O.I.	C.G.	H.G.
27.8	99.7	105.4	At2g42580	818858	TTL3 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 3)	Encodes a member of the TTL family and contains a thioredoxin like domain and three tandom TPRs. Interacts physically with BRL2/VH1 and appears to play a role in brassiosteroid and auxin signaling.	O.I.	C.G.	H.G.
27.4	99.7	367.3	At3g13750	820584	BGAL1 (Beta galactosidase 1)	beta-galactosidase, glycosyl hydrolase family 35	O.I.	C.G.	H.G.
27.2	99.7	61.5	At1g22740	838880	RABG3B	GTP-binding protein Rab7	O.I.	C.G.	H.G.
26.5	99.7	69.5	At1g54740	841915	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;OPMBF	O.I.	C.G.	H.G.
26.4	99.7	44.5	At3g19850	821522	phototropic-responsive NPH3 family protein	F:protein binding, signal transducer activity;P:response to light stimulus;C:endomembrane system;P	O.I.	C.G.	H.G.
25.5	99.7	25.4	At1g31350	840024	F-box family protein	F:molecular_function unknown;P:unknown;C:cellular_component unknown;PMBO	O.I.	C.G.	H.G.
24.4	99.6	67.4	At1g02660	839544	lipase class 3 family protein	F:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;MOFPBV	O.I.	C.G.	H.G.
24.4	99.6	34.6	At1g49000	841322	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
24.2	99.6	197.7	At4g36670	829820	mannitol transporter, putative	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMOPAV	O.I.	C.G.	H.G.
23.0	99.6	35.3	At2g42040	818804	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;PMO	O.I.	C.G.	H.G.
22.5	99.6	93.6	At2g39400	818525	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:unknown;BOPMFVA	O.I.	C.G.	H.G.
22.5	99.6	46.2	At3g21080	821660	ABC transporter-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
22.4	99.6	78.9	At5g28770	832990	BZO2H3	bZIP protein BZO2H3 mRNA, partial cds	O.I.	C.G.	H.G.
22.3	99.6	218.4	At5g55930	835691	OPT1 (OLIGOPEPTIDE TRANSPORTER 1)	oligopeptide transporter	O.I.	C.G.	H.G.
21.1	99.6	137.4	At1g25560	839143	TEM1 (TEMPRANILLO 1)	Encodes a member of the RAV transcription factor family that contains AP2 and B3 binding domains. Involved in the regulation of flowering under long days. Loss of function results in early flowering. Overexpression causes late flowering and repression of expression of FT.	O.I.	C.G.	H.G.
21.1	99.6	113.2	At5g15410	831393	DND1 (DEFENSE NO DEATH 1)	'defense, no death' gene (DND1) encodes a mutated cyclic nucleotide-gated cation channel; Same as CNGC2 (article ID 229): Cyclic nucleotide gated channel, activated by cAMP, conducts K+ and other monovalent cations but excludes Na+, does not contain the GYG amino acid sequence found in other channels with this conductivity profile. Conducts Ca2+ into cells which is linked to the generation of NO and the NO signaling pathway involved in the innate immune response to pathogens.	O.I.	C.G.	H.G.
20.7	99.6	39.4	At1g05810	837091	RABA5E (RAB GTPASE HOMOLOG A5E)	F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:chloroplast;MOFPBVA	O.I.	C.G.	H.G.
20.5	99.6	31.9	At3g61150	825287	HDG1 (HOMEODOMAIN GLABROUS 1)	Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.	O.I.	C.G.	H.G.
20.4	99.6	56.1	At3g06080	819781	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
20.2	99.6	230.3	At3g15630	820805	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
20.2	99.6	73.2	At3g63380	825513	calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA12)	F:calmodulin binding, calcium-transporting ATPase activity;P:calcium ion transport, cation transport, metabolic process, ATP biosynthetic process;C:membrane;BMOFPAV	O.I.	C.G.	H.G.
20.1	99.6	37.8	At1g50040	841428	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMBV	O.I.	C.G.	H.G.
20.0	99.6	150.3	At5g05440	830427	unknown protein	F:molecular_function unknown;P:unknown;C:cellular_component unknown;PBO	O.I.	C.G.	H.G.
19.9	99.6	112.8	At3g45300	823668	IVD (ISOVALERYL-COA-DEHYDROGENASE)	Encodes isovaleryl-coenzyme a dehydrogenase.	O.I.	C.G.	H.G.
19.9	99.6	26.6	At3g50650	824228	scarecrow-like transcription factor 7 (SCL7)	F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PMFOBV	O.I.	C.G.	H.G.
19.8	99.6	185.8	At5g62360	836357	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
19.8	99.6	83.6	At5g42900	834301	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
19.8	99.6	19.8	At1g78270	844162	AtUGT85A4 (UDP-glucosyl transferase 85A4)	F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, glucuronosyltransferase activity;P:metabolic process;C:cellular_component unknown;PMVBFO	O.I.	C.G.	H.G.
19.3	99.6	106.6	At4g20860	827834	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:response to cyclopentenone;C:endomembrane system;BFPOAM	O.I.	C.G.	H.G.
19.3	99.6	76.2	At2g31800	817737	ankyrin protein kinase, putative	F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:regulation of signal transduction, protein amino acid phosphorylation;C:unknown;MOPBFVA	O.I.	C.G.	H.G.
19.1	99.6	42.4	At1g61380	842432	SD1-29 (S-DOMAIN-1 29)	F:carbohydrate binding, protein kinase activity, kinase activity;P:protein amino acid autophosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
19.0	99.5	58.4	At2g17880	816298	DNAJ heat shock protein, putative	F:heat shock protein binding;P:protein folding;C:chloroplast;BOMFPAV	O.I.	C.G.	H.G.
18.8	99.5	177.1	At2g31810	817738	acetolactate synthase small subunit, putative	F:acetolactate synthase activity, amino acid binding;P:branched chain family amino acid biosynthetic process;C:chloroplast;OBFAP	O.I.	C.G.	H.G.
18.8	99.5	70.3	At4g00330	828125	CRCK2	high overall homology to CRCK1	O.I.	C.G.	H.G.
18.7	99.5	36.1	At3g15060	820735	AtRABA1g (Arabidopsis Rab GTPase homolog A1g)	F:GTP binding;P:response to cadmium ion;C:unknown;MOFPBAV	O.I.	C.G.	H.G.
18.3	99.5	279.7	At1g52200	841650	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:plasma membrane;PFMO	O.I.	C.G.	H.G.
18.3	99.5	105.4	At5g03040	831696	iqd2 (IQ-domain 2)	F:calmodulin binding;P:biological_process unknown;C:plasma membrane;PMOF	O.I.	C.G.	H.G.
18.3	99.5	88.5	At4g03510	825654	RMA1	RMA1 encodes a novel 28 kDa protein with a RING finger motif and a C-terminal membrane-anchoring domain that is involved in the secretory pathway.	O.I.	C.G.	H.G.
17.8	99.5	295.6	At5g56870	835789	BGAL4 (beta-galactosidase 4)	F:beta-galactosidase activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:endomembrane system, beta-galactosidase complex;PBMFOA	O.I.	C.G.	H.G.
17.7	99.5	240.7	At1g62510	842548	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;OBPMVFA	O.I.	C.G.	H.G.
17.7	99.5	9.3	At4g18980	827634	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
17.5	99.5	59.9	At5g08520	830751	myb family transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POMFB	O.I.	C.G.	H.G.
17.4	99.5	66.3	At3g57410	824908	VLN3 (VILLIN 3)	Encodes a protein with high homology to animal villin.	O.I.	C.G.	H.G.
17.1	99.5	225.3	At2g39570	818542	ACT domain-containing protein	F:amino acid binding;P:metabolic process;C:unknown;POB	O.I.	C.G.	H.G.
17.1	99.5	92.0	At1g30720	839952	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOA	O.I.	C.G.	H.G.
17.0	99.5	134.9	At1g10070	837543	ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2)	Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.	O.I.	C.G.	H.G.
16.7	99.5	493.8	At4g35770	829730	SEN1 (SENESCENCE 1)	Senescence-associated gene that is strongly induced by phosphate starvation. Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant.	O.I.	C.G.	H.G.
16.6	99.5	126.4	At5g39580	833954	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:defense response to fungus, N-terminal protein myristoylation;C:endomembrane system;PFO	O.I.	C.G.	H.G.
16.3	99.5	26.3	At5g44910	834521	Toll-Interleukin-Resistance (TIR) domain-containing protein	F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P	O.I.	C.G.	H.G.
16.2	99.5	57.8	At5g46050	834646	PTR3 (PEPTIDE TRANSPORTER 3)	Encodes a di- and tri-peptide transporter involved in responses to wounding, virulent bacterial pathogens, and high NaCl concentrations. The protein is predicted to have 12 transmembrane helicies.	O.I.	C.G.	H.G.
16.2	99.5	29.9	At1g64380	842745	AP2 domain-containing transcription factor, putative	encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.	O.I.	C.G.	H.G.
16.0	99.5	134.4	At5g21170	832243	5'-AMP-activated protein kinase beta-2 subunit, putative	F:AMP-activated protein kinase activity;P:N-terminal protein myristoylation;C:chloroplast;MFPOB	O.I.	C.G.	H.G.
16.0	99.5	74.5	At4g17245	827437	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV	O.I.	C.G.	H.G.
15.8	99.5	99.2	At5g16340	831495	AMP-binding protein, putative	F:catalytic activity;P:metabolic process;C:unknown;BOMFPAV	O.I.	C.G.	H.G.
15.7	99.5	274.9	At5g64120	836533	peroxidase, putative	encodes a cell wall bound peroxidase that is induced by hypo-osmolarity	O.I.	C.G.	H.G.
15.7	99.5	207.3	At3g10985	2745879	SAG20 (SENESCENCE ASSOCIATED GENE 20)	A senescence-associated gene whose expression is induced in response to treatment with Nep1, a fungal protein that causes necrosis.	O.I.	C.G.	H.G.
15.7	99.5	96.1	At2g22860	816817	ATPSK2 (PHYTOSULFOKINE 2 PRECURSOR)	Phytosulfokine 2 precursor, coding for a unique plant peptide growth factor.	O.I.	C.G.	H.G.
15.7	99.5	63.5	At5g18630	831981	lipase class 3 family protein	F:triacylglycerol lipase activity;P:lipid metabolic process;C:endomembrane system;PFOBMV	O.I.	C.G.	H.G.
15.3	99.4	203.5	At1g28330	839729	DYL1 (DORMANCY-ASSOCIATED PROTEIN-LIKE 1)	dormancy-associated protein (DRM1)	O.I.	C.G.	H.G.
15.2	99.4	280.3	At5g14920	831344	gibberellin-regulated family protein	F:unknown;P:response to gibberellin stimulus;C:endomembrane system;MBOFPVA	O.I.	C.G.	H.G.
14.7	99.4	26.8	At4g24240	828525	WRKY7	Encodes a Ca-dependent calmodulin binding protein. Sequence similarity to the WRKY transcription factor gene family.	O.I.	C.G.	H.G.
14.6	99.4	219.1	At4g12480	826860	pEARLI 1	a putative lipid transfer protein, vernalization-responsive and cold-induced	O.I.	C.G.	H.G.
14.5	99.4	299.6	At3g30775	822833	ERD5 (EARLY RESPONSIVE TO DEHYDRATION 5)	Encodes a proline oxidase that is predicted to localize to the inner mitochondrial membrane, its mRNA expression induced by high levels of Al and by osmotic stress. The promoter contains an L-proline-inducible element.	O.I.	C.G.	H.G.
14.4	99.4	169.4	At5g40450	834043	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast, plasma membrane;MOBFPAV	O.I.	C.G.	H.G.
14.4	99.4	34.9	At3g57800	825530	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFB	O.I.	C.G.	H.G.
14.3	99.4	114.2	At3g59350	825104	serine/threonine protein kinase, putative	F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
14.3	99.4	62.8	At4g21680	828255	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:plasma membrane, membrane;BPMOF	O.I.	C.G.	H.G.
14.3	99.4	48.4	At3g60980	825270	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:response to oxidative stress;C:unknown;PO	O.I.	C.G.	H.G.
14.3	99.4	17.7	At5g04310	830310	pectate lyase family protein	F:pectate lyase activity;P:biological_process unknown;C:anchored to membrane;BPFO	O.I.	C.G.	H.G.
14.2	99.4	337.5	At5g49360	834996	BXL1 (BETA-XYLOSIDASE 1)	Encodes a bifunctional {beta}-D-xylosidase/{alpha}-L-arabinofuranosidase required for pectic arabinan modification. Located in the extracellular matrix. Gene is expressed specifically in tissues undergoing secondary wall thickening. This is a member of glycosyl hydrolase family 3 and has six other closely related members.	O.I.	C.G.	H.G.
14.2	99.4	159.6	At5g51070	835180	ERD1 (EARLY RESPONSIVE TO DEHYDRATION 1)	ATP-dependent Clp protease regulatory subunit	O.I.	C.G.	H.G.
14.2	99.4	17.7	At3g03000	821161	calmodulin, putative	Calmodulin like protein localized in the plant vacuolar compartment with a function of binding and modifying the activity of a tonoplast transporter (AtNHX1) from within the vacuole in a Ca+2- and pH-dependent manner	O.I.	C.G.	H.G.
14.1	99.4	109.3	At3g19680	821505	unknown protein	F:unknown;P:unknown;C:plasma membrane;OPMBF	O.I.	C.G.	H.G.
14.1	99.4	78.0	At1g65390	842851	ATPP2-A5 (ARABIDOPSIS THALIANA PHLOEM PROTEIN 2 A5)	F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane, chloroplast;PB	O.I.	C.G.	H.G.
13.9	99.4	191.7	At2g36320	818205	zinc finger (AN1-like) family protein	F:DNA binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOVF	O.I.	C.G.	H.G.
13.6	99.4	157.7	At4g17870	827510	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
13.6	99.4	51.7	At1g33050	840200	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBMFP	O.I.	C.G.	H.G.
13.6	99.4	26.3	At5g06570	830545	hydrolase	F:hydrolase activity;P:metabolic process;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
13.5	99.4	163.0	At4g15530	827226	PPDK (pyruvate orthophosphate dikinase)	The product of this long transcript was shown to be targeted to the chloroplast, whereas the shorter transcript (no targeting sequence) accumulates in the cytosol. They were also found in slightly different tissues.	O.I.	C.G.	H.G.
13.4	99.4	149.2	At3g11780	820352	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:vacuole;FPO	O.I.	C.G.	H.G.

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GSM ID	-
Assay name	E-MEXP-1094-raw-cel-1379507473
GSE experiment	-

Microarray experiments to specifically-expressed genes

GSM ID - Assay name E-MEXP-1094-raw-cel-1379507473 GSE experiment -

GSM ID -

Assay name E-MEXP-1094-raw-cel-1379507473

GSE experiment -