Microarray experiments to specifically-expressed genes

GSM ID -
Assay name E-MEXP-1094-raw-cel-1379507433
GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
101.099.943.7At4g09420826524disease resistance protein (TIR-NBS class), putativeF:transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PBMOO.I.C.G.H.G.
49.799.865.8At4g36410829793UBC17 (UBIQUITIN-CONJUGATING ENZYME 17)ubiquitin-conjugating enzymeO.I.C.G.H.G.
46.499.849.0At4g27730828887OPT6 (OLIGOPEPTIDE TRANSPORTER 1)oligopeptide transporterO.I.C.G.H.G.
45.699.8113.3At5g43190834337F-box family protein (FBX6)F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;PFOO.I.C.G.H.G.
40.699.827.0At3g28320822460-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOO.I.C.G.H.G.
39.999.891.0At1g02300839576cathepsin B-like cysteine protease, putativeF:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis, regulation of catalytic activity;C:endomembrane system;MOPVBAFO.I.C.G.H.G.
38.299.845.0At5g07100830601WRKY26Encodes WRKY DNA-binding protein 26 (WRKY26).O.I.C.G.H.G.
37.999.8396.7At5g44130834436FLA13 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 13 PRECURSOR)F:molecular_function unknown;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane, plant-type cell wall;PBOMAO.I.C.G.H.G.
34.699.751.6At4g16563827356aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:plant-type cell wall;PMFOO.I.C.G.H.G.
32.999.7135.0At5g01810830556CIPK15 (CBL-INTERACTING PROTEIN KINASE 15)Encodes a CBL-interacting serine/threonine protein kinase, also has similarities to SOS2 kinase.O.I.C.G.H.G.
32.999.795.6At5g58650835979PSY1 (plant peptide containing sulfated tyrosine 1)Encodes PSY1, an18-aa tyrosine-sulfated glycopeptide that promotes cellular proliferation and expansion. PSY1 is widely expressed in various tissues, including shoot apical meristem, and is highly up-regulated by wounding. Perception of PSY1 depends on At1g72300, a leucine-rich repeat receptor kinase (LRR-RK).O.I.C.G.H.G.
31.399.765.0At5g03730831748CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1)Homologous to the RAF family of serine/threonine protein kinases. Negative regulator in the ethylene signal transduction pathway. Interacts with the putative ethylene receptors ETR1 and ERS. Constitutively expressed.O.I.C.G.H.G.
30.899.788.7At2g28630817412KCS12 (3-KETOACYL-COA SYNTHASE 12)Encodes KCS12, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).O.I.C.G.H.G.
30.499.734.1At4g39070830062zinc finger (B-box type) family proteinF:transcription factor activity, zinc ion binding;P:response to chitin, regulation of transcription;C:intracellular;POMO.I.C.G.H.G.
29.799.7322.0At1g15670838136kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBOAFVO.I.C.G.H.G.
28.899.734.7At3g60290825200oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donorsF:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biosynthetic process;C:cellular_component unknown;POBFMO.I.C.G.H.G.
28.699.751.3At1g09420837465G6PD4 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 4)Encodes a protein similar to glucose-6-phosphate dehydrogenase but, based on amino acid differences in the active site and lack of activity, does not encode a functional G6PDH. The amino acid sequence for the consensus sequence of the G6PDH active site (DHYLGKE) differs in three places in this protein. gc exon splice site at 20574 is based on protein alignment, and is not confirmed experimentally.O.I.C.G.H.G.
28.299.771.7At1g54740841915-F:molecular_function unknown;P:biological_process unknown;C:unknown;OPMBFO.I.C.G.H.G.
27.799.771.9At1g02660839544lipase class 3 family proteinF:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;MOFPBVO.I.C.G.H.G.
27.699.726.4At1g31350840024F-box family proteinF:molecular_function unknown;P:unknown;C:cellular_component unknown;PMBOO.I.C.G.H.G.
27.099.786.7At5g28770832990BZO2H3bZIP protein BZO2H3 mRNA, partial cdsO.I.C.G.H.G.
26.699.750.2At3g21080821660ABC transporter-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
26.599.7101.5At2g39400818525hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:unknown;BOPMFVAO.I.C.G.H.G.
26.299.763.6At3g06080819781unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
26.199.722.7At1g78270844162AtUGT85A4 (UDP-glucosyl transferase 85A4)F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, glucuronosyltransferase activity;P:metabolic process;C:cellular_component unknown;PMVBFOO.I.C.G.H.G.
26.099.735.7At1g49000841322unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
24.999.6200.8At4g36670829820mannitol transporter, putativeF:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMOPAVO.I.C.G.H.G.
24.699.6184.4At4g22470828342protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;MBOPFVAO.I.C.G.H.G.
24.499.642.8At3g19850821522phototropic-responsive NPH3 family proteinF:protein binding, signal transducer activity;P:response to light stimulus;C:endomembrane system;PO.I.C.G.H.G.
24.499.636.3At2g42040818804-F:molecular_function unknown;P:biological_process unknown;C:unknown;PMOO.I.C.G.H.G.
24.299.636.2At2g42280818829basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMO.I.C.G.H.G.
24.099.6343.5At3g13750820584BGAL1 (Beta galactosidase 1)beta-galactosidase, glycosyl hydrolase family 35O.I.C.G.H.G.
24.099.657.9At1g22740838880RABG3BGTP-binding protein Rab7O.I.C.G.H.G.
24.099.655.0At5g23340832398-F:unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBVO.I.C.G.H.G.
23.999.697.7At2g42580818858TTL3 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 3)Encodes a member of the TTL family and contains a thioredoxin like domain and three tandom TPRs. Interacts physically with BRL2/VH1 and appears to play a role in brassiosteroid and auxin signaling.O.I.C.G.H.G.
23.099.668.7At5g08520830751myb family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POMFBO.I.C.G.H.G.
22.799.6220.4At5g55930835691OPT1 (OLIGOPEPTIDE TRANSPORTER 1)oligopeptide transporterO.I.C.G.H.G.
22.699.6117.2At5g15410831393DND1 (DEFENSE NO DEATH 1)'defense, no death' gene (DND1) encodes a mutated cyclic nucleotide-gated cation channel; Same as CNGC2 (article ID 229): Cyclic nucleotide gated channel, activated by cAMP, conducts K+ and other monovalent cations but excludes Na+, does not contain the GYG amino acid sequence found in other channels with this conductivity profile. Conducts Ca2+ into cells which is linked to the generation of NO and the NO signaling pathway involved in the innate immune response to pathogens.O.I.C.G.H.G.
22.299.6158.3At5g05440830427unknown proteinF:molecular_function unknown;P:unknown;C:cellular_component unknown;PBOO.I.C.G.H.G.
21.999.6140.0At1g25560839143TEM1 (TEMPRANILLO 1)Encodes a member of the RAV transcription factor family that contains AP2 and B3 binding domains. Involved in the regulation of flowering under long days. Loss of function results in early flowering. Overexpression causes late flowering and repression of expression of FT.O.I.C.G.H.G.
21.599.680.5At2g31800817737ankyrin protein kinase, putativeF:protein serine/threonine/tyrosine kinase activity, kinase activity;P:regulation of signal transduction, protein amino acid phosphorylation;C:unknown;MOPBFVAO.I.C.G.H.G.
21.599.632.6At3g61150825287HDG1 (HOMEODOMAIN GLABROUS 1)Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.O.I.C.G.H.G.
20.999.685.8At5g42900834301unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
20.799.660.9At2g17880816298DNAJ heat shock protein, putativeF:heat shock protein binding;P:protein folding;C:chloroplast;BOMFPAVO.I.C.G.H.G.
20.699.639.3At1g05810837091RABA5E (RAB GTPASE HOMOLOG A5E)F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:chloroplast;MOFPBVAO.I.C.G.H.G.
20.299.643.6At1g61380842432SD1-29 (S-DOMAIN-1 29)F:carbohydrate binding, protein kinase activity, kinase activity;P:protein amino acid autophosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
19.899.6185.7At5g62360836357invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:cellular_component unknown;PFOO.I.C.G.H.G.
19.699.630.9At4g24240828525WRKY7Encodes a Ca-dependent calmodulin binding protein. Sequence similarity to the WRKY transcription factor gene family.O.I.C.G.H.G.
19.399.6225.3At3g15630820805unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
19.299.6143.2At1g10070837543ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2)Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.O.I.C.G.H.G.
18.799.5176.6At2g31810817738acetolactate synthase small subunit, putativeF:acetolactate synthase activity, amino acid binding;P:branched chain family amino acid biosynthetic process;C:chloroplast;OBFAPO.I.C.G.H.G.
18.699.562.1At5g46050834646PTR3 (PEPTIDE TRANSPORTER 3)Encodes a di- and tri-peptide transporter involved in responses to wounding, virulent bacterial pathogens, and high NaCl concentrations. The protein is predicted to have 12 transmembrane helicies.O.I.C.G.H.G.
17.799.5141.6At5g211708322435'-AMP-activated protein kinase beta-2 subunit, putativeF:AMP-activated protein kinase activity;P:N-terminal protein myristoylation;C:chloroplast;MFPOBO.I.C.G.H.G.
17.799.5104.7At5g16340831495AMP-binding protein, putativeF:catalytic activity;P:metabolic process;C:unknown;BOMFPAVO.I.C.G.H.G.
17.699.586.9At4g03510825654RMA1RMA1 encodes a novel 28 kDa protein with a RING finger motif and a C-terminal membrane-anchoring domain that is involved in the secretory pathway.O.I.C.G.H.G.
17.599.531.1At1g64380842745AP2 domain-containing transcription factor, putativeencodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.O.I.C.G.H.G.
17.499.5129.1At5g39580833954peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:defense response to fungus, N-terminal protein myristoylation;C:endomembrane system;PFOO.I.C.G.H.G.
17.299.544.5At1g79700844309ovule development protein, putativeF:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent;C:nucleus;POBO.I.C.G.H.G.
17.099.5214.9At1g28330839729DYL1 (DORMANCY-ASSOCIATED PROTEIN-LIKE 1)dormancy-associated protein (DRM1)O.I.C.G.H.G.
17.099.524.6At3g50650824228scarecrow-like transcription factor 7 (SCL7)F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PMFOBVO.I.C.G.H.G.
16.999.585.6At1g65390842851ATPP2-A5 (ARABIDOPSIS THALIANA PHLOEM PROTEIN 2 A5)F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane, chloroplast;PBO.I.C.G.H.G.
16.799.5285.9At5g56870835789BGAL4 (beta-galactosidase 4)F:beta-galactosidase activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:endomembrane system, beta-galactosidase complex;PBMFOAO.I.C.G.H.G.
16.699.5282.3At5g64120836533peroxidase, putativeencodes a cell wall bound peroxidase that is induced by hypo-osmolarityO.I.C.G.H.G.
16.699.5102.9At3g45300823668IVD (ISOVALERYL-COA-DEHYDROGENASE)Encodes isovaleryl-coenzyme a dehydrogenase.O.I.C.G.H.G.
16.599.519.0At5g04310830310pectate lyase family proteinF:pectate lyase activity;P:biological_process unknown;C:anchored to membrane;BPFOO.I.C.G.H.G.
16.399.5220.4At2g39570818542ACT domain-containing proteinF:amino acid binding;P:metabolic process;C:unknown;POBO.I.C.G.H.G.
16.399.5120.7At2g19800816499MIOX2 (MYO-INOSITOL OXYGENASE 2)Encodes a myo-inositol oxygenase family gene.O.I.C.G.H.G.
16.299.589.7At1g30720839952FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOAO.I.C.G.H.G.
16.199.533.5At3g15060820735AtRABA1g (Arabidopsis Rab GTPase homolog A1g)F:GTP binding;P:response to cadmium ion;C:unknown;MOFPBAVO.I.C.G.H.G.
15.899.597.7At5g03040831696iqd2 (IQ-domain 2)F:calmodulin binding;P:biological_process unknown;C:plasma membrane;PMOFO.I.C.G.H.G.
15.899.545.5At5g43170834334AZF3 (ARABIDOPSIS ZINC-FINGER PROTEIN 3)Encodes zinc finger protein. mRNA levels are elevated in response to high salinity and low temperature. The protein is localized to the nucleus and acts as a transcriptional repressor.O.I.C.G.H.G.
15.799.5259.2At1g52200841650unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:plasma membrane;PFMOO.I.C.G.H.G.
15.799.563.5At5g18630831981lipase class 3 family proteinF:triacylglycerol lipase activity;P:lipid metabolic process;C:endomembrane system;PFOBMVO.I.C.G.H.G.
15.699.539.7At1g14740838039unknown proteinF:unknown;P:unknown;C:cellular_component unknown;PMOBFAO.I.C.G.H.G.
15.499.564.6At2g21640816702-Encodes a protein of unknown function that is a marker for oxidative stress response.O.I.C.G.H.G.
15.499.563.8At3g63380825513calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA12)F:calmodulin binding, calcium-transporting ATPase activity;P:calcium ion transport, cation transport, metabolic process, ATP biosynthetic process;C:membrane;BMOFPAVO.I.C.G.H.G.
15.399.4224.5At4g12480826860pEARLI 1a putative lipid transfer protein, vernalization-responsive and cold-inducedO.I.C.G.H.G.
15.199.431.3At2g19460816465unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
15.099.4278.7At5g14920831344gibberellin-regulated family proteinF:unknown;P:response to gibberellin stimulus;C:endomembrane system;MBOFPVAO.I.C.G.H.G.
14.899.432.5At1g50040841428unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMBVO.I.C.G.H.G.
14.799.4273.8At3g47340823888ASN1 (GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1)encodes a glutamine-dependent asparagine synthetase, the predicted ASN1 peptide contains a purF-type glutamine-binding domain, and is expressed predominantly in shoot tissues, where light has a negative effect on its mRNA accumulation. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell.O.I.C.G.H.G.
14.799.4126.2At1g03090838362MCCAMCCA is the biotinylated subunit of the dimer MCCase, which is involved in leucine degradation. Both subunits are nuclear coded and the active enzyme is located in the mitochondrion.O.I.C.G.H.G.
14.799.4107.6At2g30600817610BTB/POZ domain-containing proteinF:protein binding;P:cell adhesion;C:cellular_component unknown;MPOVFO.I.C.G.H.G.
14.599.4117.2At2g45170819125AtATG8eInvolved in autophagy. Under nutrient starvation the protein localizes to autophagosomes.O.I.C.G.H.G.
14.599.414.8At4g08040826317ACS11encodes an aminotransferase that belongs to ACC synthase gene family structurallyO.I.C.G.H.G.
14.499.4298.0At3g30775822833ERD5 (EARLY RESPONSIVE TO DEHYDRATION 5)Encodes a proline oxidase that is predicted to localize to the inner mitochondrial membrane, its mRNA expression induced by high levels of Al and by osmotic stress. The promoter contains an L-proline-inducible element.O.I.C.G.H.G.
14.399.4457.4At4g35770829730SEN1 (SENESCENCE 1)Senescence-associated gene that is strongly induced by phosphate starvation. Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant.O.I.C.G.H.G.
14.399.4168.8At5g40450834043unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast, plasma membrane;MOBFPAVO.I.C.G.H.G.
14.399.4160.2At5g51070835180ERD1 (EARLY RESPONSIVE TO DEHYDRATION 1)ATP-dependent Clp protease regulatory subunitO.I.C.G.H.G.
14.299.461.2At4g00330828125CRCK2high overall homology to CRCK1O.I.C.G.H.G.
14.199.445.5At4g23210828420protein kinase family proteinEncodes a Cysteine-rich receptor-like kinase (CRK13). Overexpression of CRK13 leads to hypersensitive response cell death, and induces defense against pathogens by causing increased accumulation of salicylic acid.O.I.C.G.H.G.
14.099.44.3At1g03010839556phototropic-responsive NPH3 family proteinF:protein binding, signal transducer activity;P:response to light stimulus;C:unknown;PMO.I.C.G.H.G.
13.899.449.4At4g08470826406MAPKKK10member of MEKK subfamilyO.I.C.G.H.G.
13.799.4105.5At1g21670838769-F:unknown;P:proteolysis;C:cell wall, plant-type cell wall;BOPAFMO.I.C.G.H.G.
13.699.4157.7At4g17870827510-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
13.699.464.6At1g23090838917AST91 (SULFATE TRANSPORTER 91)Encodes AST91 mRNA for sulfate transporter.O.I.C.G.H.G.
13.699.447.2At3g60980825270pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:response to oxidative stress;C:unknown;POO.I.C.G.H.G.
13.699.429.1At1g09530837479PIF3 (PHYTOCHROME INTERACTING FACTOR 3)Transcription factor interacting with photoreceptors phyA and phyB. Forms a ternary complex in vitro with G-box element of the promoters of LHY, CCA1. Acts as a negative regulator of phyB signalling. It degrades rapidly after irradiation of dark grown seedlings in a process controlled by phytochromes. Does not play a significant role in controlling light input and function of the circadian clockwork. Binds to G- and E-boxes, but not to other ACEs. Binds to anthocyanin biosynthetic genes in a light- and HY5-independent fashion. PIF3 function as a transcriptional activator can be functionally and mechanistically separated from its role in repression of PhyB mediated processes.O.I.C.G.H.G.
13.599.4212.0At2g43620818964chitinase, putativeF:chitin binding, chitinase activity;P:response to salt stress;C:apoplast;PBFOVMO.I.C.G.H.G.
13.599.451.5At1g33050840200unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBMFPO.I.C.G.H.G.



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