Microarray experiments to specifically-expressed genes

GSM ID -
Assay name E-MEXP-1094-raw-cel-1379507193
GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
108.099.9124.7At1g51850841612leucine-rich repeat protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVAO.I.C.G.H.G.
89.099.966.1At1g49000841322unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
80.199.974.2At3g55150824681ATEXO70H1 (exocyst subunit EXO70 family protein H1)A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.O.I.C.G.H.G.
61.399.8119.0At1g51800841606leucine-rich repeat protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
58.799.877.3At1g51790841605kinaseF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
54.599.853.2At4g27730828887OPT6 (OLIGOPEPTIDE TRANSPORTER 1)oligopeptide transporterO.I.C.G.H.G.
53.799.866.2At5g67450836881AZF1 (ARABIDOPSIS ZINC-FINGER PROTEIN 1)Encodes zinc-finger protein. mRNA levels are elevated in response to low temperature, cold temperatures and high salt. The protein is localized to the nucleus and acts as a transcriptional repressor.O.I.C.G.H.G.
49.799.8148.5At2g19190816436FRK1 (FLG22-INDUCED RECEPTOR-LIKE KINASE 1)Receptor-like protein kinase. Involved in early defense signaling.O.I.C.G.H.G.
48.999.8216.8At5g39580833954peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:defense response to fungus, N-terminal protein myristoylation;C:endomembrane system;PFOO.I.C.G.H.G.
48.799.8178.4At2g17740816283DC1 domain-containing proteinF:unknown;P:unknown;C:cellular_component unknown;POO.I.C.G.H.G.
48.699.8259.2At4g22470828342protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;MBOPFVAO.I.C.G.H.G.
48.399.867.7At3g21080821660ABC transporter-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
46.099.865.7At1g61380842432SD1-29 (S-DOMAIN-1 29)F:carbohydrate binding, protein kinase activity, kinase activity;P:protein amino acid autophosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
45.399.8169.1At1g72060843537serine-type endopeptidase inhibitorF:serine-type endopeptidase inhibitor activity;P:response to oxidative stress;C:endomembrane system;PO.I.C.G.H.G.
44.699.8194.0At5g48430834898aspartic-type endopeptidaseF:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PO.I.C.G.H.G.
44.199.852.7At4g21400827892protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
41.799.842.2At5g44910834521Toll-Interleukin-Resistance (TIR) domain-containing proteinF:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PO.I.C.G.H.G.
41.299.827.9At4g09420826524disease resistance protein (TIR-NBS class), putativeF:transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PBMOO.I.C.G.H.G.
39.999.8153.5At3g46280823773protein kinase-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMFBOO.I.C.G.H.G.
39.899.844.1At4g24240828525WRKY7Encodes a Ca-dependent calmodulin binding protein. Sequence similarity to the WRKY transcription factor gene family.O.I.C.G.H.G.
38.399.8366.0At1g15670838136kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBOAFVO.I.C.G.H.G.
38.199.851.1At5g61560836277protein kinase family proteinF:in 6 functions;P:protein amino acid phosphorylation, protein ubiquitination;C:chloroplast, plasma membrane;MPOBFVAO.I.C.G.H.G.
37.899.871.5At5g03730831748CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1)Homologous to the RAF family of serine/threonine protein kinases. Negative regulator in the ethylene signal transduction pathway. Interacts with the putative ethylene receptors ETR1 and ERS. Constitutively expressed.O.I.C.G.H.G.
36.199.723.7At1g16130838182WAKL2 (wall associated kinase-like 2)wall-associated kinase likeO.I.C.G.H.G.
35.299.730.0At4g25110828614AtMC2 (metacaspase 2)F:cysteine-type endopeptidase activity;P:proteolysis;C:unknown;POMFBVAO.I.C.G.H.G.
34.899.784.9At5g46050834646PTR3 (PEPTIDE TRANSPORTER 3)Encodes a di- and tri-peptide transporter involved in responses to wounding, virulent bacterial pathogens, and high NaCl concentrations. The protein is predicted to have 12 transmembrane helicies.O.I.C.G.H.G.
34.799.794.9At2g44370819044DC1 domain-containing proteinF:unknown;P:unknown;C:unknown;POMFO.I.C.G.H.G.
33.799.7193.9At4g38550830012-F:unknown;P:unknown;C:chloroplast;MFPOBVAO.I.C.G.H.G.
33.399.734.9At1g66910843009protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
33.199.742.9At1g12940837852ATNRT2.5 (nitrate transporter2.5)member of High affinity nitrate transporter familyO.I.C.G.H.G.
32.999.7119.4At1g65390842851ATPP2-A5 (ARABIDOPSIS THALIANA PHLOEM PROTEIN 2 A5)F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane, chloroplast;PBO.I.C.G.H.G.
32.999.749.2At4g01720828001WRKY47member of WRKY Transcription Factor; Group II-bO.I.C.G.H.G.
32.499.7395.0At5g64120836533peroxidase, putativeencodes a cell wall bound peroxidase that is induced by hypo-osmolarityO.I.C.G.H.G.
32.199.7128.6At2g39200818505MLO12 (MILDEW RESISTANCE LOCUS O 12)A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO6 belongs to the clade IV, with AtMLO2, AtMLO3 and AtMLO12. The gene is expressed during early seedling growth, in root tips and cotyledon vascular system, in floral organs (anthers and stigma), and in fruit abscission zone, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).O.I.C.G.H.G.
31.899.774.8At4g08470826406MAPKKK10member of MEKK subfamilyO.I.C.G.H.G.
31.799.752.5At4g36410829793UBC17 (UBIQUITIN-CONJUGATING ENZYME 17)ubiquitin-conjugating enzymeO.I.C.G.H.G.
31.299.772.7At4g21410827893protein kinase family proteinF:kinase activity;P:response to abscisic acid stimulus;C:plasma membrane, vacuole;MPOBFVAO.I.C.G.H.G.
30.699.752.0At5g05190830401unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVO.I.C.G.H.G.
29.899.7314.8At2g43620818964chitinase, putativeF:chitin binding, chitinase activity;P:response to salt stress;C:apoplast;PBFOVMO.I.C.G.H.G.
29.799.7219.3At4g36670829820mannitol transporter, putativeF:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMOPAVO.I.C.G.H.G.
29.799.7112.6At3g22060821768receptor protein kinase-relatedcontains Pfam profile: PF01657 Domain of unknown function that is usually associated with protein kinase domain Pfam:PF00069, however this protein does not have the protein kinase domainO.I.C.G.H.G.
29.699.7356.1At1g52200841650unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:plasma membrane;PFMOO.I.C.G.H.G.
29.099.724.0At4g01750827905RGXT2 (rhamnogalacturonan xylosyltransferase 2)Encodes a protein with UDP-xylose-dependent xylosyltransferase activity, which transfers Xyl onto L-fucose and (albeit less efficiently) L-arabinose. The linkage to L-fucose was shown to be preferentially to the O-4 position. Analysis of mutant containing T-DNA insertion in this gene indicate that the RGXT2 protein might be involved in the synthesis of the α-D-Xyl-(1,3)-α-L-Fuc-(1,4)-L-Rha structure in pectic rhamnogalacturonan II.O.I.C.G.H.G.
28.899.712.8At3g21780821732UGT71B6 (UDP-glucosyl transferase 71B6)Encodes a protein with UDP-glucosyl transferase activity that was shown to preferentially glucosylates abscisic acid (ABA), and not its catabolites. Moreover, UGT71B6 was shown to have a strict preference for the naturally-occurring ABA enantiomer, (+)-ABA, and not its 'unnatural' relative, (-)-ABA. This is in contrast to the other identified UGT genes catalyzing the glucosylation of ABA which were shown to accept both stereoisomers as substrates.O.I.C.G.H.G.
28.599.7105.3At2g39400818525hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:unknown;BOPMFVAO.I.C.G.H.G.
28.299.732.9At1g64170842721ATCHX16 (CATION/H+ EXCHANGER 16)member of Putative Na+/H+ antiporter familyO.I.C.G.H.G.
28.199.763.1At4g01250827896WRKY22member of WRKY Transcription Factor; Group II-eO.I.C.G.H.G.
27.699.798.4At3g52450824410PUB22 (PLANT U-BOX 22)Encodes a cytoplasmically localized U-box domain E3 ubiquitin ligase protein that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity.O.I.C.G.H.G.
27.699.755.9At5g25250832596-F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, vacuole;BOMFPAVO.I.C.G.H.G.
27.599.7227.3At4g33050829442EDA39 (embryo sac development arrest 39)F:calmodulin binding;P:polar nucleus fusion, response to chitin;C:cellular_component unknown;PFOO.I.C.G.H.G.
27.099.763.0At1g24530839068transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:plasma membrane, heterotrimeric G-protein complex;MFOBPAO.I.C.G.H.G.
26.999.737.8At5g07100830601WRKY26Encodes WRKY DNA-binding protein 26 (WRKY26).O.I.C.G.H.G.
26.099.7193.4At2g39210818506nodulin family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBPFMAO.I.C.G.H.G.
25.899.735.8At3g61150825287HDG1 (HOMEODOMAIN GLABROUS 1)Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.O.I.C.G.H.G.
25.499.6183.2At1g68840843216RAV2 (REGULATOR OF THE ATPASE OF THE VACUOLAR MEMBRANE)Rav2 is part of a complex that has been named `regulator of the (H+)-ATPase of the vacuolar and endosomal membranes' (RAVE)O.I.C.G.H.G.
25.099.6268.2At3g50480824212HR4 (HOMOLOG OF RPW8 4)Homolog of RPW8O.I.C.G.H.G.
24.699.696.1At2g22880816819VQ motif-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
24.399.633.4At5g46330834676FLS2 (FLAGELLIN-SENSITIVE 2)Encodes a leucine-rich repeat serine/threonine protein kinase that is expressed ubiquitously. FLS2 is involved in MAP kinase signalling relay involved in innate immunity. Essential in the perception of flagellin, a potent elicitor of the defense response. FLS2 is directed for degradation by the bacterial ubiquitin ligase AvrPtoB.O.I.C.G.H.G.
23.299.6107.2At1g30720839952FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOAO.I.C.G.H.G.
22.999.689.3At1g10340837573ankyrin repeat family proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVAO.I.C.G.H.G.
22.599.630.7At1g05300837029ZIP5member of Fe(II) transporter isolog familyO.I.C.G.H.G.
22.299.6134.5At1g21670838769-F:unknown;P:proteolysis;C:cell wall, plant-type cell wall;BOPAFMO.I.C.G.H.G.
22.199.634.6At2g42280818829basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMO.I.C.G.H.G.
22.099.656.7At4g23210828420protein kinase family proteinEncodes a Cysteine-rich receptor-like kinase (CRK13). Overexpression of CRK13 leads to hypersensitive response cell death, and induces defense against pathogens by causing increased accumulation of salicylic acid.O.I.C.G.H.G.
21.599.665.4At4g26200828726ACS7Member of a family of proteins in Arabidopsis that encode 1-Amino-cyclopropane-1-carboxylate synthase, an enzyme involved in ethylene biosynthesis. Not expressed in response to IAA.O.I.C.G.H.G.
21.399.633.0At5g06570830545hydrolaseF:hydrolase activity;P:metabolic process;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
21.399.624.5At3g59700825139ATHLECRK (ARABIDOPSIS THALIANA LECTIN-RECEPTOR KINASE)member of Receptor kinase-like protein familyO.I.C.G.H.G.
20.999.688.3At4g31550829282WRKY11member of WRKY Transcription Factor; Group II-d; negative regulator of basal resistance to Pseudomonas syringae.O.I.C.G.H.G.
20.999.674.4At3g63380825513calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA12)F:calmodulin binding, calcium-transporting ATPase activity;P:calcium ion transport, cation transport, metabolic process, ATP biosynthetic process;C:membrane;BMOFPAVO.I.C.G.H.G.
20.999.662.6At1g18570838438MYB51 (MYB DOMAIN PROTEIN 51)Encodes a member of the R2R3-MYB transcription family. Involved in indole glucosinolate biosynthesis.O.I.C.G.H.G.
20.699.6167.0At1g13110837868CYP71B7member of CYP71BO.I.C.G.H.G.
20.699.688.4At4g23810828481WRKY53member of WRKY Transcription Factor; Group IIIO.I.C.G.H.G.
20.699.660.5At5g39610833957ATNAC6 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 6)Encodes a NAC-domain transcription factor. Positively regulates aging-induced cell death and senescence in leaves. This gene is upregulated in response to salt stress in wildtype as well as NTHK1 transgenic lines although in the latter case the induction was drastically reduced. It was also upregulated by ABA, ACC and NAA treatment, although in the latter two cases, the induction occurred relatively late when compared with NaCl or ABA treatments. Note: this protein (AtNAC6) on occasion has also been referred to as AtNAC2, not to be confused with the AtNAC2 found at locus AT3G15510.O.I.C.G.H.G.
20.599.675.6At5g58650835979PSY1 (plant peptide containing sulfated tyrosine 1)Encodes PSY1, an18-aa tyrosine-sulfated glycopeptide that promotes cellular proliferation and expansion. PSY1 is widely expressed in various tissues, including shoot apical meristem, and is highly up-regulated by wounding. Perception of PSY1 depends on At1g72300, a leucine-rich repeat receptor kinase (LRR-RK).O.I.C.G.H.G.
20.399.6134.8At1g25560839143TEM1 (TEMPRANILLO 1)Encodes a member of the RAV transcription factor family that contains AP2 and B3 binding domains. Involved in the regulation of flowering under long days. Loss of function results in early flowering. Overexpression causes late flowering and repression of expression of FT.O.I.C.G.H.G.
20.299.6315.8At3g13750820584BGAL1 (Beta galactosidase 1)beta-galactosidase, glycosyl hydrolase family 35O.I.C.G.H.G.
20.299.6142.9At4g01700828131chitinase, putativeF:chitinase activity;P:cell wall macromolecule catabolic process;C:cell wall;PBOMVFO.I.C.G.H.G.
20.299.619.1At4g23130828412CRK5 (CYSTEINE-RICH RLK5)Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307)O.I.C.G.H.G.
19.899.644.7At1g14740838039unknown proteinF:unknown;P:unknown;C:cellular_component unknown;PMOBFAO.I.C.G.H.G.
19.699.671.8At4g00330828125CRCK2high overall homology to CRCK1O.I.C.G.H.G.
19.599.656.2At1g35350840424-F:unknown;P:unknown;C:integral to membrane;FMPOBO.I.C.G.H.G.
19.099.5201.9At5g55930835691OPT1 (OLIGOPEPTIDE TRANSPORTER 1)oligopeptide transporterO.I.C.G.H.G.
19.099.546.3At3g62150825388PGP21 (P-GLYCOPROTEIN 21)F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:plasma membrane;BOMAFPVO.I.C.G.H.G.
18.599.555.5At1g25390839125protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
18.299.526.4At1g51620841587protein kinase family proteinF:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
17.999.573.3At2g31800817737ankyrin protein kinase, putativeF:protein serine/threonine/tyrosine kinase activity, kinase activity;P:regulation of signal transduction, protein amino acid phosphorylation;C:unknown;MOPBFVAO.I.C.G.H.G.
17.899.5187.9At5g40450834043unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast, plasma membrane;MOBFPAVO.I.C.G.H.G.
17.799.5102.1At4g20860827834FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:response to cyclopentenone;C:endomembrane system;BFPOAMO.I.C.G.H.G.
17.799.535.2At3g15060820735AtRABA1g (Arabidopsis Rab GTPase homolog A1g)F:GTP binding;P:response to cadmium ion;C:unknown;MOFPBAVO.I.C.G.H.G.
17.699.519.6At5g04310830310pectate lyase family proteinF:pectate lyase activity;P:biological_process unknown;C:anchored to membrane;BPFOO.I.C.G.H.G.
17.499.5114.2At1g22400838846UGT85A1F:in 6 functions;P:metabolic process;C:cellular_component unknown;PMBVOFO.I.C.G.H.G.
17.199.518.4At1g78270844162AtUGT85A4 (UDP-glucosyl transferase 85A4)F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, glucuronosyltransferase activity;P:metabolic process;C:cellular_component unknown;PMVBFOO.I.C.G.H.G.
17.099.593.2At4g23570828457SGT1AClosely related to SGT1B, may function in SCF(TIR1) mediated protein degradation. AtSGT1a and AtSGT1b are functionally redundant in the resistance to pathogenes. AtSGT1b was more highly expressed than AtSGT1. The N-terminal TPR domain of AtSGT1a reduces the steady-state level of Arabidopsis SGT1 proteins whereas the same domain from AtSGT1b enhances SGT1 accumulation. The TPR domain is dispensable for SGT1 resistance. AtSGT1a is induced upon pathogen infection and can function in R gene-mediated resistance.O.I.C.G.H.G.
16.899.5173.9At5g51070835180ERD1 (EARLY RESPONSIVE TO DEHYDRATION 1)ATP-dependent Clp protease regulatory subunitO.I.C.G.H.G.
16.899.558.8At5g08520830751myb family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POMFBO.I.C.G.H.G.
16.799.567.8At4g21680828255proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:plasma membrane, membrane;BPMOFO.I.C.G.H.G.
16.699.539.0At5g03700831753PAN domain-containing proteinF:sugar binding;P:unknown;C:plasma membrane;PO.I.C.G.H.G.
16.699.522.4At1g79670844306RFO1 (RESISTANCE TO FUSARIUM OXYSPORUM 1)Encodes a receptor-like kinase that does not contain an extracellular leucine-rich repeat domain. A novel type of dominant disease-resistance protein that confers resistance to a broad spectrum of Fusarium races.O.I.C.G.H.G.
16.599.5166.0At2g31810817738acetolactate synthase small subunit, putativeF:acetolactate synthase activity, amino acid binding;P:branched chain family amino acid biosynthetic process;C:chloroplast;OBFAPO.I.C.G.H.G.
16.599.582.6At2g23320816864WRKY15Encodes WRKY DNA-binding protein 15 (WRKY15).O.I.C.G.H.G.



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