Microarray experiments to specifically-expressed genes

GSM ID -
Assay name E-ATMX-35-raw-cel-1574334912
GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
69.799.9107.9At1g05560837058UGT75B1 (UDP-GLUCOSYLTRANSFERASE 75B1)A UDP-glucose transferase localized in the phragmoplast. It has been co-purified with the callose synthase complex and may transfer UDP-glucose from sucrose synthase to the callose synthase and thus help form a substrate channel for the synthesis of callose at the forming cell plate. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid. UGT1 encodes a protein with glucosyltransferase activity with high sequence homology to UGT2 (AT1G05530). It belongs to an UGT subfamily that binds UDP-glucose but not UDP-glucuronate, UDP-galactose, or UDP-rhamnose as the glycosyl donor. UGT1 was shown to be able to use abscisic acid as glycosylation substrate in the presence of UDP-glucose. UGT1/UGT75B1 catalyzes the formation of the p-aminobenzoate-glucose ester in vitro and in vivo. It appears to be the enzyme predominantly responsible for pABA-Glc formation in Arabidopsis based on assays in leaves, flowers, and siliques.O.I.C.G.H.G.
48.899.888.1At4g23290828428protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:mitochondrion;MPOBFVAO.I.C.G.H.G.
46.799.874.5At5g54630835552zinc finger protein-relatedF:transcription factor activity;P:regulation of transcription;C:intracellular;PFMOO.I.C.G.H.G.
44.599.863.0At5g02830831772pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:chloroplast;POMFBAO.I.C.G.H.G.
34.799.793.4At1g10150837552carbohydrate bindingF:carbohydrate binding;P:unknown;C:mitochondrion;PBOO.I.C.G.H.G.
33.699.7140.6At4g10120826603ATSPS4FEncodes a protein with putative sucrose-phosphate synthase activity.O.I.C.G.H.G.
32.299.799.7At5g42520834259ATBPC6F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOVO.I.C.G.H.G.
31.299.732.3At3g57180824885GTP bindingF:GTP binding;P:biological_process unknown;C:chloroplast;MOBFPVAO.I.C.G.H.G.
29.699.778.5At4g32190829352centromeric protein-relatedF:unknown;P:unknown;C:unknown;MOBFPAVO.I.C.G.H.G.
29.399.758.0At2g30150817567UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVOFO.I.C.G.H.G.
26.999.7205.3At2g32480817809membrane-associated zinc metalloprotease, putativeF:protein binding, metalloendopeptidase activity;P:proteolysis;C:chloroplast, plastid;BOPAMO.I.C.G.H.G.
23.999.649.9At3g20100821553CYP705A19member of CYP705AO.I.C.G.H.G.
23.899.647.3At2g29320817481tropinone reductase, putative / tropine dehydrogenase, putativeF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
23.499.654.9At5g13730831218SIG4 (SIGMA FACTOR 4)Encodes sigma 4 factor, involved in regulating the activity of the plastid-encoded RNA polymerase PEP. Regulates the overall quantity of NDH complexes and thus influences NDH activity.O.I.C.G.H.G.
23.299.6138.6At5g67370836872unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;OBPO.I.C.G.H.G.
22.799.636.6At3g46670823820UGT76E11 (UDP-GLUCOSYL TRANSFERASE 76E11)F:quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOFO.I.C.G.H.G.
21.799.6313.9At1g23390838947kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.C.G.H.G.
21.799.629.4At3g56630824830CYP94D2member of CYP94DO.I.C.G.H.G.
21.299.6390.9At3g15850820828FAD5 (FATTY ACID DESATURASE 5)Chloroplastic enzyme responsible for the synthesis of 16:1 fatty acids from galactolipids and sulpholipids. Uses ferredoxin as electron donor.O.I.C.G.H.G.
21.299.613.0At2g36750818247UGT73C1 (UDP-GLUCOSYL TRANSFERASE 73C1)F:cis-zeatin O-beta-D-glucosyltransferase activity, UDP-glycosyltransferase activity, UDP-glucosyltransferase activity, transferase activity, transferring glycosyl groups, trans-zeatin O-beta-D-glucosyltransferase activity;P:response to UV-B;C:unknown;PMVBOFO.I.C.G.H.G.
20.099.6147.7At3g51420824305SSL4 (STRICTOSIDINE SYNTHASE-LIKE 4)F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endomembrane system;BPMOFAO.I.C.G.H.G.
19.799.6133.3At1g70820843419phosphoglucomutase, putative / glucose phosphomutase, putativeF:intramolecular transferase activity, phosphotransferases;P:carbohydrate metabolic process;C:chloroplast;BOAMPFO.I.C.G.H.G.
19.599.640.3At5g56850835787unknown proteinF:unknown;P:unknown;C:unknown;OMBFPAVO.I.C.G.H.G.
19.499.6111.1At5g13770831222pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POFMABO.I.C.G.H.G.
19.099.569.8At1g35460840438basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMO.I.C.G.H.G.
18.699.5216.0At3g16520820900UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:in 6 functions;P:metabolic process;C:cellular_component unknown;PMVBOFO.I.C.G.H.G.
18.099.534.0At1g50840841506POLGAMMA2 (polymerase gamma 2)DNA Polymerase gamma2. Dual targeting to mitochondria and plastids due to alternative translation initiation.O.I.C.G.H.G.
17.499.560.8At2g32530817814ATCSLB03encodes a gene similar to cellulose synthaseO.I.C.G.H.G.
17.099.574.2At3g07350819923unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
16.599.5276.3At1g23740838984oxidoreductase, zinc-binding dehydrogenase family proteinF:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:response to cold;C:in 6 components;BOFMPAVO.I.C.G.H.G.
16.499.5110.7At4g10060826597catalytic/ glucosylceramidaseF:catalytic activity, glucosylceramidase activity;P:glucosylceramide catabolic process, sphingolipid metabolic process;C:vacuole;BMPOAO.I.C.G.H.G.
16.399.5168.3At1g21920838794MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;OMBPFO.I.C.G.H.G.
16.199.5107.9At1g13260837886RAV1Encodes an AP2/B3 domain transcription factor which is upregulated in response to low temperature. It contains a B3 DNA binding domain. It has circadian regulation and may function as a negative growth regulator.O.I.C.G.H.G.
16.099.576.0At1g42550840860PMI1 (PLASTID MOVEMENT IMPAIRED1)Encodes a plant-specific protein of unknown function that appears to be conserved among angiosperms.O.I.C.G.H.G.
15.999.532.4At3g09650820122HCF152 (HIGH CHLOROPHYLL FLUORESCENCE 152)RNA binding protein involved in the processing of chloroplast psbB-psbT-psbH-petB-petD transcript unit.O.I.C.G.H.G.
15.299.454.3At5g24160832482SQE6 (SQUALENE MONOXYGENASE 6)F:squalene monooxygenase activity, oxidoreductase activity, FAD binding;P:sterol biosynthetic process;C:endomembrane system, integral to membrane;OBFMPAO.I.C.G.H.G.
15.299.425.8At1g05600837065pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBO.I.C.G.H.G.
14.699.4151.1At1g44000841000unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PBOO.I.C.G.H.G.
14.499.4327.7At5g61820836304-F:molecular_function unknown;P:biological_process unknown;C:vacuole;POO.I.C.G.H.G.
14.299.472.2At1g72820843613mitochondrial substrate carrier family proteinF:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPOO.I.C.G.H.G.
13.999.477.3At1g20650838654ATP binding / protein kinase/ protein serine/threonine kinaseF:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
13.999.470.1At5g64930836617CPR5 (CONSTITUTIVE EXPRESSION OF PR GENES 5)Regulator of expression of pathogenesis-related (PR) genes. Participates in signal transduction pathways involved in plant defense (systemic acquired resistance -SAR).O.I.C.G.H.G.
13.999.411.6At1g66840843002-F:unknown;P:biological_process unknown;C:unknown;MOBFPAVO.I.C.G.H.G.
13.799.455.6At5g48220834875indole-3-glycerol phosphate synthase, putativeF:indole-3-glycerol-phosphate synthase activity, catalytic activity;P:metabolic process, tryptophan metabolic process;C:chloroplast, chloroplast stroma;BOAFPO.I.C.G.H.G.
13.699.4148.2At4g36670829820mannitol transporter, putativeF:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMOPAVO.I.C.G.H.G.
13.699.439.3At3g53920824559SIGC (RNA POLYMERASE SIGMA-SUBUNIT C)Encodes a sigma-like transcription factor, Sigma 3 (SIG3 or SIGC). As a subunit of chloroplast RNA polymerase, SIG3 confers the ability to recognize promoter sequences on the core enzyme. SIG3 transcribes specifically the psbN gene in plastids.O.I.C.G.H.G.
13.399.453.5At1g21640838766NADK2Encodes a protein with NAD kinase activity. The protein was also shown to bind calmodulin.O.I.C.G.H.G.
13.299.423.6At2g27150817257AAO3 (Abscisic ALDEHYDE OXIDASE 3)Encodes the aldehyde oxidase delta isoform catalyzing the final step in abscisic acid biosynthesis.O.I.C.G.H.G.
12.899.366.2At3g26890822305unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MFPBOO.I.C.G.H.G.
12.599.3234.7At1g17220838293FUG1 (fu-gaeri1)Encodes a chloroplast localized protein with similarity to translation initiation factor 2. Can complement loss of INFB in E.coli suggesting FUG1 does function as a translation initiation factor in vivo. Identified as a suppressor of the leaf variegation mutant var2-6. Suppression is only seen in hypomorphs as complete loss of function alleles are embryo lethal.O.I.C.G.H.G.
12.599.348.7At2g34640818029PTAC12 (PLASTID TRANSCRIPTIONALLY ACTIVE12)Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression.O.I.C.G.H.G.
12.499.374.9At2g21860816722violaxanthin de-epoxidase-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;POO.I.C.G.H.G.
12.499.373.7At5g20050832127protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
12.099.3118.2At1g61730842470DNA-binding storekeeper protein-relatedF:transcription regulator activity;P:biological_process unknown;C:cytosol, nucleolus, chloroplast;OBMFPVAO.I.C.G.H.G.
11.999.366.5At5g25630832639pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;POMFBAO.I.C.G.H.G.
11.999.366.3At5g55920835690nucleolar protein, putativeF:S-adenosylmethionine-dependent methyltransferase activity, RNA binding;P:rRNA processing;C:nucleolus;BMOFPVAO.I.C.G.H.G.
11.599.3103.6At3g61220825294short-chain dehydrogenase/reductase (SDR) family proteinF:(-)-menthol dehydrogenase activity, oxidoreductase activity, (+)-neomenthol dehydrogenase activity;P:defense response;C:plasma membrane;BOMFPAO.I.C.G.H.G.
11.599.356.5At1g61180842411disease resistance protein (CC-NBS-LRR class), putativeF:protein binding, ATP binding;P:N-terminal protein myristoylation, defense response, apoptosis;C:plasma membrane;PMBOFAO.I.C.G.H.G.
11.599.355.9At3g56140824780unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid lumen, chloroplast;PBMOFVO.I.C.G.H.G.
11.599.342.1At2g32100817770OFP16 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16)F:unknown;P:biological_process unknown;C:cellular_component unknown;PBO.I.C.G.H.G.
11.299.250.0At2g25200817058unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
11.199.2168.3At3g12050820379Aha1 domain-containing proteinF:ATPase activator activity, chaperone binding;P:response to stress;C:cytoplasm;MFOPBO.I.C.G.H.G.
11.199.287.7At5g36160833613aminotransferase-relatedF:1-aminocyclopropane-1-carboxylate synthase activity, pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, transaminase activity, catalytic activity;P:tyrosine catabolic process to phosphoenolpyruvate, cellular amino acid and derivative metabolic process, biosynthetic process;C:cellular_component unknown;BOPMAFO.I.C.G.H.G.
11.199.262.3At5g26820832740ATIREG3 (IRON-REGULATED PROTEIN 3)F:unknown;P:unknown;C:membrane;MPFOBO.I.C.G.H.G.
11.099.2372.6At1g55490841996CPN60B (CHAPERONIN 60 BETA)encodes the beta subunit of the chloroplast chaperonin 60, a homologue of bacterial GroEL. Mutants in this gene develops lesions on its leaves, expresses systemic acquired resistance (SAR) and develops accelerated cell death to heat shock stress. The protein has molecular chaperone activity for suppressing protein aggregation in vitro.O.I.C.G.H.G.
11.099.214.9At1g55930842044CBS domain-containing protein / transporter associated domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOMFPAO.I.C.G.H.G.
10.899.216.0At2g15820816078OTP51 (ORGANELLE TRANSCRIPT PROCESSING 51)Encodes a protein that promotes splicing of type II introns. otp51 mutants fail to splice intron 2 of plastid ycf3 transcripts, a factor required for the assembly of Photosystem I. Therefore, homozygous otp51 mutants have profound photosynthetic defects and can only survive in sucrose-supplemented in vitro cultures under low light conditions. OTP51 may also be involved in splicing several other transcripts and precursor forms of the trnL, trnG, trnI, and trnA transcripts also accumulate in otp51 mutants. Although OTP51 shares some homology with DNA endonucleases, it lacks key catalytic residues suggesting that it does not participate in DNA cleavage.O.I.C.G.H.G.
10.799.2162.2At3g19170821451ATPREP1 (PRESEQUENCE PROTEASE 1)Zinc metalloprotease pitrilysin subfamily A. Signal peptide degrading enzyme targeted to mitochondria and chloroplasts. Expressed only in siliques and flowersO.I.C.G.H.G.
10.699.222.8At3g20270821571lipid-binding serum glycoprotein family proteinF:lipid binding;P:biological_process unknown;C:unknown;MPOAO.I.C.G.H.G.
10.599.2103.1At2g02710814800PLPB (PAS/LOV PROTEIN B)Encodes a putative blue light receptor protein.O.I.C.G.H.G.
10.599.250.7At4g13670827001PTAC5 (PLASTID TRANSCRIPTIONALLY ACTIVE5)F:unfolded protein binding, heat shock protein binding;P:protein folding, metabolic process;C:plastid chromosome, chloroplast thylakoid membrane, chloroplast, nucleoid, chloroplast envelope;BOMPFAVO.I.C.G.H.G.
10.499.272.8At2g42770818877peroxisomal membrane 22 kDa family proteinF:molecular_function unknown;P:biological_process unknown;C:peroxisomal membrane, chloroplast, chloroplast envelope;MFPOVO.I.C.G.H.G.
10.499.255.1At5g17670831633hydrolase, acting on ester bondsF:hydrolase activity, acting on ester bonds;P:intracellular protein transport, GPI anchor metabolic process;C:chloroplast, chloroplast envelope;BOPO.I.C.G.H.G.
10.499.251.8At1g17050838275SPS2 (Solanesyl diphosphate synthase 2)Encodes a protein with solanesyl diphosphate synthase activity.O.I.C.G.H.G.
10.399.251.2At5g58770835991dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putativeF:dehydrodolichyl diphosphate synthase activity;P:dolichol biosynthetic process;C:chloroplast;OBAFMPO.I.C.G.H.G.
10.399.219.1At4g13550826988triacylglycerol lipaseF:triacylglycerol lipase activity;P:lipid metabolic process;C:chloroplast;POFMBVO.I.C.G.H.G.
10.299.234.9At1g70610843398ATTAP1member of TAP subfamilyO.I.C.G.H.G.
10.299.227.2At1g10900837633phosphatidylinositol-4-phosphate 5-kinase family proteinF:1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphatidylinositol phosphate kinase activity, ATP binding;P:phosphatidylinositol metabolic process;C:plasma membrane;OMBPFO.I.C.G.H.G.
10.199.297.0At4g00370827908ANTR2Encodes an inorganic phosphate transporter (PHT4;4).O.I.C.G.H.G.
10.099.2115.2At2g34750818040RNA polymerase I specific transcription initiation factor RRN3 family proteinF:RNA polymerase I transcription factor activity;P:biological_process unknown;C:cellular_component unknown;MFPOO.I.C.G.H.G.
10.099.295.4At1g70290843365ATTPS8Encodes an enzyme putatively involved in trehalose biosynthesis. Though the protein has both trehalose-6-phosphate synthase (TPS)-like and trehalose-6-phosphate phosphatase (TPP)-like domains, neither activity has been detected in enzymatic assays nor has the protein been able to complement yeast TPS or TPP mutants.O.I.C.G.H.G.
10.099.276.6At1g05140839307membrane-associated zinc metalloprotease, putativeF:protein binding, metalloendopeptidase activity;P:proteolysis;C:chloroplast, plastid;BOPAMFO.I.C.G.H.G.
10.099.250.0At3g22420821810WNK2 (WITH NO K 2)Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. Its transcription is under the control of circadian rhythms.O.I.C.G.H.G.
10.099.213.4At5g01880831691zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBO.I.C.G.H.G.
9.999.1103.0At5g38520833840hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:chloroplast, chloroplast envelope;BOMPFAVO.I.C.G.H.G.
9.899.1179.1At1g15980838168NDF1 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1)encodes a novel subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in cyclic electron flow around photosystem I to produce ATP.O.I.C.G.H.G.
9.799.1252.0At3g48000823955ALDH2B4 (ALDEHYDE DEHYDROGENASE 2B4)Encodes a putative (NAD+) aldehyde dehydrogenase.O.I.C.G.H.G.
9.799.1214.7At3g13470820549chaperonin, putativeF:protein binding, ATP binding;P:protein folding, cellular protein metabolic process;C:in 7 components;BOMFPAVO.I.C.G.H.G.
9.799.1207.7At2g42220818822rhodanese-like domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;OBPAMO.I.C.G.H.G.
9.799.151.6At1g62250842522unknown proteinF:unknown;P:unknown;C:chloroplast;PO.I.C.G.H.G.
9.799.148.9At5g28020832872CYSD2 (CYSTEINE SYNTHASE D2)Encodes cysteine synthase CysD2.O.I.C.G.H.G.
9.699.145.3At1g63610842666unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;OBPO.I.C.G.H.G.
9.599.160.5At4g25910828697NFU3Encodes a protein containing the NFU domain that may be involved in iron-sulfur cluster assembly. Part of a five member gene family, more closely related to NFU1 and 2 than to NFU4 and 5. Targeted to the chloroplast.O.I.C.G.H.G.
9.599.148.1At5g41790834184CIP1 (COP1-INTERACTIVE PROTEIN 1)encodes a protein that physically interacts specifically with the putative coiled-coil region of COP1 in vitro. In hypocotyl and cotyledon protoplasts, it is associated to the cytoskeleton, but not in the root. expression is not regulated by light.O.I.C.G.H.G.
9.399.199.5At4g36530829805hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:chloroplast;BOMPFAVO.I.C.G.H.G.
9.399.19.0At4g37380829892pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBO.I.C.G.H.G.
9.199.1284.5At2g26080817149AtGLDP2 (Arabidopsis thaliana glycine decarboxylase P-protein 2)F:glycine dehydrogenase (decarboxylating) activity, ATP binding;P:glycine decarboxylation via glycine cleavage system, glycine metabolic process;C:mitochondrion, glycine cleavage complex, chloroplast, chloroplast envelope;OBFAMPO.I.C.G.H.G.
9.199.140.7At3g59040825073pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POMFBAO.I.C.G.H.G.
9.099.141.9At4g26700828777ATFIM1fimbrin-like proteinO.I.C.G.H.G.
9.099.135.4At1g64500842758glutaredoxin family proteinF:electron carrier activity, protein disulfide oxidoreductase activity;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;PMBOFO.I.C.G.H.G.



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