Microarray experiments to specifically-expressed genes

GSM ID -
Assay name E-ATMX-35-raw-cel-1574334896
GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
61.499.845.3At3g57180824885GTP bindingF:GTP binding;P:biological_process unknown;C:chloroplast;MOBFPVAO.I.C.G.H.G.
48.099.8199.6At5g67370836872unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;OBPO.I.C.G.H.G.
42.899.884.6At1g05560837058UGT75B1 (UDP-GLUCOSYLTRANSFERASE 75B1)A UDP-glucose transferase localized in the phragmoplast. It has been co-purified with the callose synthase complex and may transfer UDP-glucose from sucrose synthase to the callose synthase and thus help form a substrate channel for the synthesis of callose at the forming cell plate. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid. UGT1 encodes a protein with glucosyltransferase activity with high sequence homology to UGT2 (AT1G05530). It belongs to an UGT subfamily that binds UDP-glucose but not UDP-glucuronate, UDP-galactose, or UDP-rhamnose as the glycosyl donor. UGT1 was shown to be able to use abscisic acid as glycosylation substrate in the presence of UDP-glucose. UGT1/UGT75B1 catalyzes the formation of the p-aminobenzoate-glucose ester in vitro and in vivo. It appears to be the enzyme predominantly responsible for pABA-Glc formation in Arabidopsis based on assays in leaves, flowers, and siliques.O.I.C.G.H.G.
41.099.868.6At2g30150817567UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVOFO.I.C.G.H.G.
39.599.8248.8At2g32480817809membrane-associated zinc metalloprotease, putativeF:protein binding, metalloendopeptidase activity;P:proteolysis;C:chloroplast, plastid;BOPAMO.I.C.G.H.G.
39.499.8110.3At5g42520834259ATBPC6F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOVO.I.C.G.H.G.
36.999.7182.4At1g70820843419phosphoglucomutase, putative / glucose phosphomutase, putativeF:intramolecular transferase activity, phosphotransferases;P:carbohydrate metabolic process;C:chloroplast;BOAMPFO.I.C.G.H.G.
35.299.793.0At4g13670827001PTAC5 (PLASTID TRANSCRIPTIONALLY ACTIVE5)F:unfolded protein binding, heat shock protein binding;P:protein folding, metabolic process;C:plastid chromosome, chloroplast thylakoid membrane, chloroplast, nucleoid, chloroplast envelope;BOMPFAVO.I.C.G.H.G.
34.999.7143.5At4g10120826603ATSPS4FEncodes a protein with putative sucrose-phosphate synthase activity.O.I.C.G.H.G.
34.499.753.6At5g56850835787unknown proteinF:unknown;P:unknown;C:unknown;OMBFPAVO.I.C.G.H.G.
32.999.772.3At4g23290828428protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:mitochondrion;MPOBFVAO.I.C.G.H.G.
32.099.7480.3At3g15850820828FAD5 (FATTY ACID DESATURASE 5)Chloroplastic enzyme responsible for the synthesis of 16:1 fatty acids from galactolipids and sulpholipids. Uses ferredoxin as electron donor.O.I.C.G.H.G.
31.499.735.4At3g56630824830CYP94D2member of CYP94DO.I.C.G.H.G.
31.299.7141.0At5g13770831222pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POFMABO.I.C.G.H.G.
29.799.786.4At1g10150837552carbohydrate bindingF:carbohydrate binding;P:unknown;C:mitochondrion;PBOO.I.C.G.H.G.
29.199.7367.3At1g23740838984oxidoreductase, zinc-binding dehydrogenase family proteinF:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:response to cold;C:in 6 components;BOFMPAVO.I.C.G.H.G.
29.099.7213.2At1g44000841000unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PBOO.I.C.G.H.G.
28.899.7105.1At1g23020838910FRO3Encodes a ferric chelate reductase whose transcription is regulated by FIT1. Expressed in the root, shoot, flower and cotyledon.O.I.C.G.H.G.
27.399.7172.4At3g51420824305SSL4 (STRICTOSIDINE SYNTHASE-LIKE 4)F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endomembrane system;BPMOFAO.I.C.G.H.G.
26.599.774.2At4g32190829352centromeric protein-relatedF:unknown;P:unknown;C:unknown;MOBFPAVO.I.C.G.H.G.
26.499.748.5At5g02830831772pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:chloroplast;POMFBAO.I.C.G.H.G.
25.899.7342.5At1g23390838947kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.C.G.H.G.
25.299.682.7At3g56140824780unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid lumen, chloroplast;PBMOFVO.I.C.G.H.G.
24.199.6101.7At1g20650838654ATP binding / protein kinase/ protein serine/threonine kinaseF:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
23.999.661.0At5g05250830407unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
23.699.649.6At3g20100821553CYP705A19member of CYP705AO.I.C.G.H.G.
22.999.6318.0At1g17220838293FUG1 (fu-gaeri1)Encodes a chloroplast localized protein with similarity to translation initiation factor 2. Can complement loss of INFB in E.coli suggesting FUG1 does function as a translation initiation factor in vivo. Identified as a suppressor of the leaf variegation mutant var2-6. Suppression is only seen in hypomorphs as complete loss of function alleles are embryo lethal.O.I.C.G.H.G.
22.799.6406.0At2g05540815103glycine-rich proteinF:unknown;P:unknown;C:endomembrane system;MPBOFVAO.I.C.G.H.G.
22.399.651.5At5g54630835552zinc finger protein-relatedF:transcription factor activity;P:regulation of transcription;C:intracellular;PFMOO.I.C.G.H.G.
22.099.689.2At1g42550840860PMI1 (PLASTID MOVEMENT IMPAIRED1)Encodes a plant-specific protein of unknown function that appears to be conserved among angiosperms.O.I.C.G.H.G.
22.099.653.3At5g13730831218SIG4 (SIGMA FACTOR 4)Encodes sigma 4 factor, involved in regulating the activity of the plastid-encoded RNA polymerase PEP. Regulates the overall quantity of NDH complexes and thus influences NDH activity.O.I.C.G.H.G.
22.099.614.6At1g66840843002-F:unknown;P:biological_process unknown;C:unknown;MOBFPAVO.I.C.G.H.G.
19.999.6146.1At5g38520833840hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:chloroplast, chloroplast envelope;BOMPFAVO.I.C.G.H.G.
19.799.694.5At2g21860816722violaxanthin de-epoxidase-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;POO.I.C.G.H.G.
19.199.680.8At3g26890822305unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MFPBOO.I.C.G.H.G.
17.899.561.4At2g32530817814ATCSLB03encodes a gene similar to cellulose synthaseO.I.C.G.H.G.
17.799.5115.7At1g73650843699oxidoreductase, acting on the CH-CH group of donorsF:oxidoreductase activity, acting on the CH-CH group of donors;P:lipid metabolic process;C:plasma membrane, vacuole;OBFMPO.I.C.G.H.G.
17.299.5126.8At4g00370827908ANTR2Encodes an inorganic phosphate transporter (PHT4;4).O.I.C.G.H.G.
17.299.531.4At3g03770821164leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
17.199.536.2At1g27120839601galactosyltransferase family proteinF:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:endomembrane system, membrane;MPOBFO.I.C.G.H.G.
16.899.5112.1At4g10060826597catalytic/ glucosylceramidaseF:catalytic activity, glucosylceramidase activity;P:glucosylceramide catabolic process, sphingolipid metabolic process;C:vacuole;BMPOAO.I.C.G.H.G.
16.799.5204.7At3g16520820900UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:in 6 functions;P:metabolic process;C:cellular_component unknown;PMVBOFO.I.C.G.H.G.
16.599.539.4At2g29320817481tropinone reductase, putative / tropine dehydrogenase, putativeF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
16.299.543.9At1g70610843398ATTAP1member of TAP subfamilyO.I.C.G.H.G.
16.299.532.9At1g22050838810MUB6 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 6 PRECURSOR)F:molecular_function unknown;P:protein modification process;C:cellular_component unknown;PMO.I.C.G.H.G.
15.799.5272.3At3g13470820549chaperonin, putativeF:protein binding, ATP binding;P:protein folding, cellular protein metabolic process;C:in 7 components;BOMFPAVO.I.C.G.H.G.
15.699.5126.9At1g55960842047-F:molecular_function unknown;P:biological_process unknown;C:unknown;MPOO.I.C.G.H.G.
15.399.4185.0At2g35810818154unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOO.I.C.G.H.G.
15.199.4118.7At3g61220825294short-chain dehydrogenase/reductase (SDR) family proteinF:(-)-menthol dehydrogenase activity, oxidoreductase activity, (+)-neomenthol dehydrogenase activity;P:defense response;C:plasma membrane;BOMFPAO.I.C.G.H.G.
14.999.482.4At5g27560832816unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;OBPO.I.C.G.H.G.
14.899.472.1At5g64930836617CPR5 (CONSTITUTIVE EXPRESSION OF PR GENES 5)Regulator of expression of pathogenesis-related (PR) genes. Participates in signal transduction pathways involved in plant defense (systemic acquired resistance -SAR).O.I.C.G.H.G.
14.599.455.5At1g63610842666unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;OBPO.I.C.G.H.G.
14.499.430.8At3g09650820122HCF152 (HIGH CHLOROPHYLL FLUORESCENCE 152)RNA binding protein involved in the processing of chloroplast psbB-psbT-psbH-petB-petD transcript unit.O.I.C.G.H.G.
14.199.451.6At2g34640818029PTAC12 (PLASTID TRANSCRIPTIONALLY ACTIVE12)Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression.O.I.C.G.H.G.
14.099.458.6At5g28020832872CYSD2 (CYSTEINE SYNTHASE D2)Encodes cysteine synthase CysD2.O.I.C.G.H.G.
13.999.471.8At5g25630832639pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;POMFBAO.I.C.G.H.G.
13.799.469.3At5g26820832740ATIREG3 (IRON-REGULATED PROTEIN 3)F:unknown;P:unknown;C:membrane;MPFOBO.I.C.G.H.G.
13.599.4210.9At1g15980838168NDF1 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1)encodes a novel subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in cyclic electron flow around photosystem I to produce ATP.O.I.C.G.H.G.
13.599.4113.5At5g37360833710unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;PO.I.C.G.H.G.
13.599.416.5At1g55930842044CBS domain-containing protein / transporter associated domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOMFPAO.I.C.G.H.G.
13.499.4411.6At1g55490841996CPN60B (CHAPERONIN 60 BETA)encodes the beta subunit of the chloroplast chaperonin 60, a homologue of bacterial GroEL. Mutants in this gene develops lesions on its leaves, expresses systemic acquired resistance (SAR) and develops accelerated cell death to heat shock stress. The protein has molecular chaperone activity for suppressing protein aggregation in vitro.O.I.C.G.H.G.
13.299.4179.7At3g19170821451ATPREP1 (PRESEQUENCE PROTEASE 1)Zinc metalloprotease pitrilysin subfamily A. Signal peptide degrading enzyme targeted to mitochondria and chloroplasts. Expressed only in siliques and flowersO.I.C.G.H.G.
13.199.4172.1At3g51820824345G4Encodes a protein with chlorophyll synthase activity. This enzyme has been shown to perform the esterification of chlorophyllide (a and b), the last step of chlorophyll biosynthesis. Although it can use either geranylgeranyl pyrophosphate (GGPP) or phytyl pyrophosphate (PhyPP) as substrates, the esterification reaction was faster with GGPP than with PhyPP.O.I.C.G.H.G.
13.099.4111.4At4g12060826814Clp amino terminal domain-containing proteinF:protein binding, ATP binding;P:protein metabolic process;C:plastid stroma, chloroplast, chloroplast stroma, chloroplast envelope;BOPO.I.C.G.H.G.
12.999.3117.9At5g67330836868ATNRAMP4Encodes a member of the Nramp2 metal transporter family; like its homolog Atnramp3, localized in vacuolar membrane. Seedlings of double mutant, atnramp3-1 atnramp4-1, were arrested at early germination.O.I.C.G.H.G.
12.899.310.5At4g37380829892pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBO.I.C.G.H.G.
12.499.326.0At5g46390834682peptidase S41 family proteinF:serine-type peptidase activity, protein binding;P:proteolysis, intracellular signaling cascade;C:thylakoid lumen, chloroplast thylakoid lumen;BOMPO.I.C.G.H.G.
12.099.378.1At2g42770818877peroxisomal membrane 22 kDa family proteinF:molecular_function unknown;P:biological_process unknown;C:peroxisomal membrane, chloroplast, chloroplast envelope;MFPOVO.I.C.G.H.G.
11.999.327.5At1g50840841506POLGAMMA2 (polymerase gamma 2)DNA Polymerase gamma2. Dual targeting to mitochondria and plastids due to alternative translation initiation.O.I.C.G.H.G.
11.999.313.3At5g44410834467FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAMO.I.C.G.H.G.
11.699.373.2At2g40430818636-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBO.I.C.G.H.G.
11.599.345.7At3g59040825073pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POMFBAO.I.C.G.H.G.
11.499.3170.5At3g12050820379Aha1 domain-containing proteinF:ATPase activator activity, chaperone binding;P:response to stress;C:cytoplasm;MFOPBO.I.C.G.H.G.
11.399.3140.2At1g21920838794MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;OMBPFO.I.C.G.H.G.
11.299.250.3At5g48220834875indole-3-glycerol phosphate synthase, putativeF:indole-3-glycerol-phosphate synthase activity, catalytic activity;P:metabolic process, tryptophan metabolic process;C:chloroplast, chloroplast stroma;BOAFPO.I.C.G.H.G.
11.199.2288.5At5g61820836304-F:molecular_function unknown;P:biological_process unknown;C:vacuole;POO.I.C.G.H.G.
11.199.251.9At3g23410821922alcohol oxidase-relatedEncodes a fatty alcohol oxidase.O.I.C.G.H.G.
11.099.238.6At5g40250834023zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVO.I.C.G.H.G.
10.899.2203.2At2g23590816891MES8 (METHYL ESTERASE 8)Encodes a protein shown to have carboxylesterase activity in vitro. It has similarity to the SABP2 methyl salicylate esterase from tobacco. This protein does not act on methyl IAA, methyl JA, MeSA, MeGA4, or MEGA9 in vitro.O.I.C.G.H.G.
10.899.220.4At5g20320832154DCL4 (DICER-LIKE 4)Encodes an RNase III-like enzyme that catalyzes processing of trans-acting small interfering RNA precursors in a distinct small RNA biogenesis pathway. The protein is also involved in the production of 21-nt primary siRNAs from both inverted-repeat constructs and endogenous sequences, as well as the RDR6-dependent 21-nt secondary siRNAs involved in long-range cell-to-cell signaling. It binds DRB4, a ds-RNA binding protein.O.I.C.G.H.G.
10.799.2217.8At2g42220818822rhodanese-like domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;OBPAMO.I.C.G.H.G.
10.699.253.4At5g38510833839rhomboid family proteinF:molecular_function unknown;P:biological_process unknown;C:integral to membrane;BOMPFAO.I.C.G.H.G.
10.599.247.4At2g24540816990AFR (ATTENUATED FAR-RED RESPONSE)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFVAO.I.C.G.H.G.
10.499.2260.7At3g48000823955ALDH2B4 (ALDEHYDE DEHYDROGENASE 2B4)Encodes a putative (NAD+) aldehyde dehydrogenase.O.I.C.G.H.G.
10.499.248.4At1g62560842553FMO GS-OX3 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 3)belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolatesO.I.C.G.H.G.
10.399.287.6At1g51805841607leucine-rich repeat protein kinase, putativeF:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
10.399.251.4At1g35460840438basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMO.I.C.G.H.G.
10.399.243.9At1g71720843502S1 RNA-binding domain-containing proteinF:RNA binding;P:unknown;C:chloroplast;BOPMAFO.I.C.G.H.G.
10.199.284.8At1g01790837332KEA1 (K EFFLUX ANTIPORTER 1)K efflux antiporter KEA1O.I.C.G.H.G.
10.199.246.4At5g51140835188pseudouridine synthase family proteinF:pseudouridine synthase activity;P:pseudouridine synthesis;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.
9.999.1581.4At1g68010843129HPREncodes hydroxypyruvate reductase.O.I.C.G.H.G.
9.899.163.9At3g13070820495CBS domain-containing protein / transporter associated domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOMPFAO.I.C.G.H.G.
9.899.159.8At1g72820843613mitochondrial substrate carrier family proteinF:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPOO.I.C.G.H.G.
9.899.144.2At3g17770821045dihydroxyacetone kinase family proteinF:glycerone kinase activity, ATP binding;P:glycerol metabolic process;C:cellular_component unknown;BOFMPAO.I.C.G.H.G.
9.899.123.3At1g73870843723zinc finger (B-box type) family proteinF:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;POO.I.C.G.H.G.
9.799.1297.4At5g04140830292GLU1 (GLUTAMATE SYNTHASE 1)Encodes a gene whose sequence is similar to ferredoxin dependent glutamate synthase (Fd-GOGAT). Expression in leaves is induced by light and sucrose. Proposed to be involved in photorespiration and nitrogen assimilation.O.I.C.G.H.G.
9.799.176.7At2g31790817736UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOFO.I.C.G.H.G.
9.699.1291.7At2g26080817149AtGLDP2 (Arabidopsis thaliana glycine decarboxylase P-protein 2)F:glycine dehydrogenase (decarboxylating) activity, ATP binding;P:glycine decarboxylation via glycine cleavage system, glycine metabolic process;C:mitochondrion, glycine cleavage complex, chloroplast, chloroplast envelope;OBFAMPO.I.C.G.H.G.
9.699.145.5At2g17972816308unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;PO.I.C.G.H.G.
9.699.144.2At3g17040820961HCF107 (HIGH CHLOROPHYLL FLUORESCENT 107)It is a RNA tetratricopeptide repeat-containing protein required for normal processing of transcripts from the polycistronic chloroplast psbB-psbT-psbH-petB-petD operon coding for proteins of the photosystem II and cytochrome b6/f complexes. Localizes to the chloroplast membrane. Involved in regulating plastidial gene expression and biogenesis.O.I.C.G.H.G.



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