CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID -

Assay name E-ATMX-35-raw-cel-1574334832

GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
2128.9 100.0 208.6 At3g60760 825247 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
2044.4 100.0 159.7 At1g55410 3767461 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
1802.1 100.0 151.3 At2g17090 816214 SSP (SHORT SUSPENSOR) F:protein tyrosine kinase activity, binding, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:cellular_component unknown;PMOBVF O.I. C.G. H.G.
1760.2 100.0 235.9 At1g48310 841251 CHR18 F:helicase activity, DNA binding, nucleic acid binding, ATP binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVA O.I. C.G. H.G.
1741.8 100.0 567.1 At2g36660 818238 PAB7 (POLY(A) BINDING PROTEIN 7) polyadenylate-binding protein, putative / PABP, putative. Member of the class III family of PABP proteins. O.I. C.G. H.G.
1703.1 100.0 249.3 At5g05510 830434 protein kinase-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOB O.I. C.G. H.G.
1634.5 100.0 143.1 At1g54240 841865 DNA binding F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;P O.I. C.G. H.G.
1629.4 100.0 261.0 At2g22600 816791 KH domain-containing protein F:RNA binding, nucleic acid binding;P:biological_process unknown;C:unknown;MPFO O.I. C.G. H.G.
1563.5 100.0 162.7 At5g39650 833961 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
1489.5 100.0 321.6 At1g12370 837792 PHR1 (PHOTOLYASE 1) encodes an amino acid sequence with significant homology to the recently characterized type II photolyases. The uvr2-1 mutant is unable to remove CPDs in vivo, and plant extracts lack detectable photolyase activity , is sensitive to UV-B and is an allele O.I. C.G. H.G.
1468.0 100.0 267.5 At1g77410 844078 BGAL16 (beta-galactosidase 16) F:cation binding, sugar binding, beta-galactosidase activity, catalytic activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:endomembrane system, beta-galactosidase complex;MBPFOA O.I. C.G. H.G.
1462.0 100.0 99.7 At3g49450 824107 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
1432.1 100.0 196.9 At4g20500 827798 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
1407.8 100.0 559.5 At1g64610 842769 WD-40 repeat family protein F:signal transducer activity;P:signal transduction;C:heterotrimeric G-protein complex;MFBOPA O.I. C.G. H.G.
1404.6 100.0 311.5 At4g17483 827461 palmitoyl protein thioesterase family protein F:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFO O.I. C.G. H.G.
1361.1 100.0 736.7 At5g16100 831467 unknown protein F:unknown;P:unknown;C:cellular_component unknown;P O.I. C.G. H.G.
1351.9 100.0 340.6 At1g77250 844061 PHD finger family protein F:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:unknown;MPFO O.I. C.G. H.G.
1310.2 100.0 185.0 At2g06040 815159 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOB O.I. C.G. H.G.
1305.0 100.0 408.8 At4g08590 826420 ORTHL (ORTHRUS-LIKE) F:ubiquitin-protein ligase activity, zinc ion binding;P:protein ubiquitination;C:cytoplasm;MPOFBV O.I. C.G. H.G.
1293.5 100.0 554.9 At1g08600 837382 ATRX F:helicase activity, DNA binding, nucleic acid binding, ATP binding;P:unknown;C:unknown;MOBFPVA O.I. C.G. H.G.
1284.6 100.0 446.4 At1g26840 839227 ORC6 (ORIGIN RECOGNITION COMPLEX PROTEIN 6) Origin Recognition Complex subunit 6. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. O.I. C.G. H.G.
1278.3 100.0 368.4 At5g27610 832823 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:biological_process unknown;C:cellular_component unknown;MOPFBV O.I. C.G. H.G.
1251.1 100.0 329.1 At3g16380 820885 PAB6 (POLY(A) BINDING PROTEIN 6) polyadenylate-binding protein, putative / PABP, putative, similar to polyadenylate-binding protein (poly(A)-binding protein) from {Arabidopsis thaliana} SP:P42731, (Cucumis sativus) GI:7528270, {Homo sapiens} SP:Q13310, {Arabidopsis thaliana} SP:Q05196; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM). Member of the class III family of PABP proteins. O.I. C.G. H.G.
1248.1 100.0 194.4 At1g75770 843910 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
1242.2 100.0 174.1 At5g13700 831215 ATPAO1 (ARABIDOPSIS THALIANA POLYAMINE OXIDASE 1) Encodes a protein with polyamine oxidase activity. The mRNA of this gene is only expressed in very low amounts in the organs where it was detected (light-grown plants). O.I. C.G. H.G.
1239.8 100.0 597.6 At3g22760 821847 SOL1 CXC domain containing TSO1-like protein 1. The gene is expressed in stamens, pollen mother cells, and immature ovules. O.I. C.G. H.G.
1205.8 100.0 612.1 At4g30860 829210 SDG4 (SET DOMAIN GROUP 4) Encodes a member of the trxG protein family. Contains a SET domain which is known to be involved in modification of histone tails by methylation. Interacts physically with AMS, but the implications of this interaction are unknown.Overexpression results in plieotrophic developmental defects. O.I. C.G. H.G.
1205.8 100.0 603.9 At5g58190 835931 ECT10 F:unknown;P:unknown;C:unknown;MPFO O.I. C.G. H.G.
1199.5 100.0 241.0 At3g01015 821318 - F:unknown;P:unknown;C:unknown;PMOF O.I. C.G. H.G.
1179.9 100.0 99.5 At5g53520 835434 ATOPT8 (ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 8) oligopeptide transporter O.I. C.G. H.G.
1176.0 100.0 346.4 At1g60240 842319 apical meristem formation protein-related F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;P O.I. C.G. H.G.
1168.0 100.0 134.1 At5g49150 834974 GEX2 (GAMETE EXPRESSED 2) Encodes a transmembrane domain containing protein expressed in sperm cells. O.I. C.G. H.G.
1164.3 100.0 387.2 At1g23210 838930 AtGH9B6 (Arabidopsis thaliana glycosyl hydrolase 9B6) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOF O.I. C.G. H.G.
1155.8 100.0 422.9 At5g55490 835642 GEX1 (GAMETE EXPRESSED PROTEIN 1) Encodes a transmembrane domain containing protein that is expressed in pollen germ cells. O.I. C.G. H.G.
1151.5 100.0 329.9 At1g19890 838577 MGH3 (MALE-GAMETE-SPECIFIC HISTONE H3) histone 3.3, male-gamete-specific expression O.I. C.G. H.G.
1148.9 100.0 240.2 At4g00240 826673 PLDBETA2 member of C2-PLD subfamily O.I. C.G. H.G.
1118.2 100.0 144.1 At5g05130 830395 SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein F:in 7 functions;P:unknown;C:unknown;MOBFPVA O.I. C.G. H.G.
1109.9 100.0 206.8 At5g09800 830840 U-box domain-containing protein F:ubiquitin-protein ligase activity, binding;P:response to chitin;C:ubiquitin ligase complex;POMBF O.I. C.G. H.G.
1073.3 100.0 241.6 At5g42010 834206 WD-40 repeat family protein F:signal transducer activity;P:signal transduction, response to salt stress;C:heterotrimeric G-protein complex;MFBOPA O.I. C.G. H.G.
1038.4 100.0 490.5 At5g10950 830962 cylicin-related F:molecular_function unknown;P:biological_process unknown;C:cytosol;MOFBPVA O.I. C.G. H.G.
1021.9 100.0 584.3 At3g50310 824193 MAPKKK20 member of MEKK subfamily O.I. C.G. H.G.
982.2 100.0 297.0 At2g44190 819026 EDE1 (ENDOSPERM DEFECTIVE 1) Encodes a novel microtubule binding protein that preferentially associates with nuclear microtubules during mitosis and is essential during the mitotic and cytokinetic stages that generate the endosperm and embryo. O.I. C.G. H.G.
980.0 100.0 326.5 At3g12140 820389 emsy N terminus domain-containing protein / ENT domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO O.I. C.G. H.G.
979.6 100.0 153.7 At4g32500 829385 AKT5 member of Stelar K+ outward rectifying channel (SKOR) family O.I. C.G. H.G.
978.4 100.0 211.3 At2g30580 817608 DRIP2 (DREB2A-INTERACTING PROTEIN 2) Encodes a C3HC4 RING-domain-containing ubiquitin E3 ligase capable of interacting with DREB2A. DRIP2 seems to be involved in regulating stress-related transcriptional changes and drought tolerance. O.I. C.G. H.G.
977.6 100.0 767.9 At3g47440 823898 TIP5 Encodes AtTIP5;1, functions as water and urea channels in pollen. O.I. C.G. H.G.
965.0 100.0 750.0 At4g37280 829882 MRG family protein F:chromatin binding;P:chromatin assembly or disassembly;C:chromatin, nucleus;MFPOB O.I. C.G. H.G.
935.4 100.0 169.2 At1g52920 841725 GPCR (G PROTEIN COUPLED RECEPTOR) Encodes a plasma membrane�localized ABA receptor, which interacts with the Gαβγ complex. It has been postulated that the binding of ABA to GCR2 results in the release of the G protein and dissociation of the heterotrimeric complex into Gα and the Gβγ dimer to activate downstream ABA effectors and to trigger the ABA responses. O.I. C.G. H.G.
889.4 100.0 594.3 At5g49900 835053 catalytic/ glucosylceramidase F:catalytic activity, glucosylceramidase activity;P:glucosylceramide catabolic process, sphingolipid metabolic process;C:integral to membrane, membrane;BPMOA O.I. C.G. H.G.
886.8 100.0 343.3 At5g16630 831525 RAD4 F:damaged DNA binding;P:nucleotide-excision repair;C:nucleus, chloroplast;MFOP O.I. C.G. H.G.
868.5 100.0 390.9 At2g25560 817094 DNAJ heat shock N-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMPFAV O.I. C.G. H.G.
858.7 100.0 184.0 At3g15620 820804 UVR3 (UV REPAIR DEFECTIVE 3) Required for photorepair of 6-4 photoproducts in Arabidopsis thaliana. O.I. C.G. H.G.
838.0 100.0 151.9 At5g07810 830674 SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein F:helicase activity, DNA binding, ATP binding, nucleic acid binding, endonuclease activity;P:unknown;C:unknown;MBOFPVA O.I. C.G. H.G.
825.9 100.0 131.4 At1g04880 839388 high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein F:transcription factor activity;P:regulation of transcription;C:intracellular, nucleus;MOPFBV O.I. C.G. H.G.
824.0 100.0 707.6 At1g71770 843507 PAB5 (POLY(A)-BINDING PROTEIN 5) Encodes a Class I polyA-binding protein. Expressed in floral organs. Binds polyA sepharose in vitro. O.I. C.G. H.G.
811.5 100.0 297.9 At5g60250 836147 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding, nucleic acid binding;P:unknown;C:unknown;MFPOB O.I. C.G. H.G.
810.0 100.0 813.1 At1g68610 843191 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO O.I. C.G. H.G.
797.6 100.0 621.7 At1g75870 843920 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
797.5 100.0 449.6 At5g67080 836843 MAPKKK19 member of MEKK subfamily O.I. C.G. H.G.
795.4 100.0 552.5 At1g79950 844335 helicase-related F:in 6 functions;P:regulation of transcription, DNA-dependent, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:mitochondrion;MBOFAPV O.I. C.G. H.G.
794.4 100.0 43.2 At1g32850 840179 UBP11 (UBIQUITIN-SPECIFIC PROTEASE 11) F:cysteine-type endopeptidase activity, ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MOFPVB O.I. C.G. H.G.
793.4 100.0 132.0 At1g06770 837188 DRIP1 (DREB2A-INTERACTING PROTEIN 1) Encodes a C3HC4 RING-domain-containing ubiquitin E3 ligase capable of interacting with DREB2A. The DRIP1-GFP fusion protein is nuclear-localized. DRIP1 seems to be involved in regulating stress-related transcriptional changes and drought tolerance. O.I. C.G. H.G.
790.3 100.0 392.0 At1g70590 843396 F-box family protein F:binding;P:biological_process unknown;C:chloroplast;BOFMPV O.I. C.G. H.G.
781.4 100.0 554.0 At4g35700 829722 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;P O.I. C.G. H.G.
763.1 100.0 200.4 At4g35560 829708 - F:molecular_function unknown;P:unknown;C:CUL4 RING ubiquitin ligase complex;MOFPB O.I. C.G. H.G.
753.5 100.0 34.5 At2g01920 814723 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related F:phospholipid binding, binding;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
738.6 100.0 76.3 At5g52340 835310 ATEXO70A2 (exocyst subunit EXO70 family protein A2) A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. O.I. C.G. H.G.
729.2 100.0 714.7 At1g49290 841352 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
720.8 100.0 237.4 At3g48440 824003 zinc finger (CCCH-type) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PMFO O.I. C.G. H.G.
702.9 100.0 121.8 At5g23480 832414 DNA binding F:DNA binding;P:histone modification, transcription initiation;C:nucleus;P O.I. C.G. H.G.
693.7 100.0 612.0 At1g15430 838114 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
690.7 100.0 246.5 At4g32440 829379 agenet domain-containing protein F:RNA binding;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
679.5 100.0 155.3 At3g60780 825249 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
653.0 100.0 369.5 At1g50810 3767429 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
633.5 100.0 134.4 At1g68120 843140 BPC3 (BASIC PENTACYSTEINE 3) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;P O.I. C.G. H.G.
632.1 100.0 113.6 At4g39753 830132 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMBOAVF O.I. C.G. H.G.
629.5 100.0 195.5 At5g54280 835516 ATM2 (ARABIDOPSIS THALIANA MYOSIN 2) Type VII myosin gene O.I. C.G. H.G.
607.4 100.0 596.8 At4g31420 829269 zinc finger (C2H2 type) family protein F:transcription factor activity;P:regulation of transcription;C:intracellular;MFOP O.I. C.G. H.G.
604.6 100.0 205.1 At4g38940 830049 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBOA O.I. C.G. H.G.
597.1 100.0 317.7 At1g78895 844227 - F:unknown;P:biological_process unknown;C:endomembrane system, endoplasmic reticulum;P O.I. C.G. H.G.
593.3 100.0 132.9 At2g37670 818344 WD-40 repeat family protein F:signal transducer activity;P:signal transduction;C:heterotrimeric G-protein complex;MFBOPAV O.I. C.G. H.G.
593.2 100.0 141.3 At2g45490 819157 AtAUR3 (ATAURORA3) Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division. Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems. In interphase cells, the protein is predominantly nuclear. During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle. The protein is concentrated in nuclear dots arranged around the nucleolus and the nuclear periphery in early prophase cells. O.I. C.G. H.G.
590.6 100.0 608.1 At2g39420 818527 esterase/lipase/thioesterase family protein F:catalytic activity;P:unknown;C:unknown;BOPMFVA O.I. C.G. H.G.
581.4 100.0 99.4 At3g12060 820380 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;PBM O.I. C.G. H.G.
578.5 100.0 251.5 At3g07400 819928 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;PFOMB O.I. C.G. H.G.
574.2 100.0 176.6 At2g22340 816766 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
563.2 100.0 200.4 At4g02730 828189 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MFOPBAV O.I. C.G. H.G.
560.9 100.0 352.2 At3g07020 819887 UDP-glucose:sterol glucosyltransferase (UGT80A2) F:transferase activity, transferring glycosyl groups;P:lipid glycosylation, carbohydrate metabolic process, metabolic process;C:plasma membrane, membrane;BMFPOV O.I. C.G. H.G.
555.1 100.0 92.6 At1g17040 838274 SHA (SH2 DOMAIN PROTEIN A) Encodes a protein that contains an SH2 domain. It can pull down a 120-kD tyrosine-phosphorylated protein in vitro. It is predicted to act as a transcription factor. O.I. C.G. H.G.
548.2 100.0 349.5 At3g06190 819793 BPM2 (BTB-POZ AND MATH DOMAIN 2) F:protein binding;P:biological_process unknown;C:cellular_component unknown;MPOF O.I. C.G. H.G.
540.5 100.0 354.8 At2g02090 814740 ETL1 F:helicase activity, DNA binding, ATP binding, nucleic acid binding;P:unknown;C:chloroplast;BMOFPVA O.I. C.G. H.G.
532.9 100.0 197.5 At4g39230 830078 isoflavone reductase, putative encodes a protein whose sequence is similar to phenylcoumaran benzylic ether reductase (PCBER), which catalyzes NADPH-dependent reduction of 8-5' linked lignans such as dehydrodiconiferyl alcohol to give isodihydrodehydrodiconiferyl alcohol. O.I. C.G. H.G.
531.0 100.0 313.4 At5g02100 831841 UNE18 (UNFERTILIZED EMBRYO SAC 18) Encodes a protein that binds to beta-sitosterol and localizes to the ER. The WFDE motif in ORP3a appears to be important for a direct interaction with PVA12 [Plant VAMP-Associated protein 12]. Mutation of this motif causes ORP3a to relocalize to the Golgi and cytosol. The interaction between PVA12 and ORP3a does not appear to be sterol-dependent. O.I. C.G. H.G.
528.6 100.0 205.2 At3g16860 820941 COBL8 (COBRA-LIKE PROTEIN 8 PRECURSOR) F:unknown;P:biological_process unknown;C:anchored to membrane;P O.I. C.G. H.G.
526.3 100.0 99.4 At5g58760 835990 DDB2 (damaged DNA-binding 2) F:nucleotide binding, zinc ion binding, nucleic acid binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOBPA O.I. C.G. H.G.
524.5 100.0 376.0 At1g03070 839581 glutamate binding F:glutamate binding;P:biological_process unknown;C:cellular_component unknown;BOMPFV O.I. C.G. H.G.
501.7 100.0 43.9 At5g28340 832919 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:cellular_component unknown;POF O.I. C.G. H.G.
500.9 100.0 88.3 At3g58800 825049 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PVO O.I. C.G. H.G.
494.7 100.0 131.3 At3g03970 819552 binding F:binding;P:spliceosome assembly, nuclear mRNA splicing, via spliceosome;C:cellular_component unknown;P O.I. C.G. H.G.
485.6 100.0 81.0 At4g30560 829179 ATCNGC9 (CYCLIC NUCLEOTIDE GATED CHANNEL 9) member of Cyclic nucleotide gated channel family O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
2128.9	100.0	208.6	At3g60760	825247	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
2044.4	100.0	159.7	At1g55410	3767461	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
1802.1	100.0	151.3	At2g17090	816214	SSP (SHORT SUSPENSOR)	F:protein tyrosine kinase activity, binding, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:cellular_component unknown;PMOBVF	O.I.	C.G.	H.G.
1760.2	100.0	235.9	At1g48310	841251	CHR18	F:helicase activity, DNA binding, nucleic acid binding, ATP binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVA	O.I.	C.G.	H.G.
1741.8	100.0	567.1	At2g36660	818238	PAB7 (POLY(A) BINDING PROTEIN 7)	polyadenylate-binding protein, putative / PABP, putative. Member of the class III family of PABP proteins.	O.I.	C.G.	H.G.
1703.1	100.0	249.3	At5g05510	830434	protein kinase-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOB	O.I.	C.G.	H.G.
1634.5	100.0	143.1	At1g54240	841865	DNA binding	F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;P	O.I.	C.G.	H.G.
1629.4	100.0	261.0	At2g22600	816791	KH domain-containing protein	F:RNA binding, nucleic acid binding;P:biological_process unknown;C:unknown;MPFO	O.I.	C.G.	H.G.
1563.5	100.0	162.7	At5g39650	833961	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
1489.5	100.0	321.6	At1g12370	837792	PHR1 (PHOTOLYASE 1)	encodes an amino acid sequence with significant homology to the recently characterized type II photolyases. The uvr2-1 mutant is unable to remove CPDs in vivo, and plant extracts lack detectable photolyase activity , is sensitive to UV-B and is an allele	O.I.	C.G.	H.G.
1468.0	100.0	267.5	At1g77410	844078	BGAL16 (beta-galactosidase 16)	F:cation binding, sugar binding, beta-galactosidase activity, catalytic activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:endomembrane system, beta-galactosidase complex;MBPFOA	O.I.	C.G.	H.G.
1462.0	100.0	99.7	At3g49450	824107	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
1432.1	100.0	196.9	At4g20500	827798	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
1407.8	100.0	559.5	At1g64610	842769	WD-40 repeat family protein	F:signal transducer activity;P:signal transduction;C:heterotrimeric G-protein complex;MFBOPA	O.I.	C.G.	H.G.
1404.6	100.0	311.5	At4g17483	827461	palmitoyl protein thioesterase family protein	F:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFO	O.I.	C.G.	H.G.
1361.1	100.0	736.7	At5g16100	831467	unknown protein	F:unknown;P:unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
1351.9	100.0	340.6	At1g77250	844061	PHD finger family protein	F:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:unknown;MPFO	O.I.	C.G.	H.G.
1310.2	100.0	185.0	At2g06040	815159	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOB	O.I.	C.G.	H.G.
1305.0	100.0	408.8	At4g08590	826420	ORTHL (ORTHRUS-LIKE)	F:ubiquitin-protein ligase activity, zinc ion binding;P:protein ubiquitination;C:cytoplasm;MPOFBV	O.I.	C.G.	H.G.
1293.5	100.0	554.9	At1g08600	837382	ATRX	F:helicase activity, DNA binding, nucleic acid binding, ATP binding;P:unknown;C:unknown;MOBFPVA	O.I.	C.G.	H.G.
1284.6	100.0	446.4	At1g26840	839227	ORC6 (ORIGIN RECOGNITION COMPLEX PROTEIN 6)	Origin Recognition Complex subunit 6. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors.	O.I.	C.G.	H.G.
1278.3	100.0	368.4	At5g27610	832823	DNA binding / transcription factor	F:transcription factor activity, DNA binding;P:biological_process unknown;C:cellular_component unknown;MOPFBV	O.I.	C.G.	H.G.
1251.1	100.0	329.1	At3g16380	820885	PAB6 (POLY(A) BINDING PROTEIN 6)	polyadenylate-binding protein, putative / PABP, putative, similar to polyadenylate-binding protein (poly(A)-binding protein) from {Arabidopsis thaliana} SP:P42731, (Cucumis sativus) GI:7528270, {Homo sapiens} SP:Q13310, {Arabidopsis thaliana} SP:Q05196; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM). Member of the class III family of PABP proteins.	O.I.	C.G.	H.G.
1248.1	100.0	194.4	At1g75770	843910	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
1242.2	100.0	174.1	At5g13700	831215	ATPAO1 (ARABIDOPSIS THALIANA POLYAMINE OXIDASE 1)	Encodes a protein with polyamine oxidase activity. The mRNA of this gene is only expressed in very low amounts in the organs where it was detected (light-grown plants).	O.I.	C.G.	H.G.
1239.8	100.0	597.6	At3g22760	821847	SOL1	CXC domain containing TSO1-like protein 1. The gene is expressed in stamens, pollen mother cells, and immature ovules.	O.I.	C.G.	H.G.
1205.8	100.0	612.1	At4g30860	829210	SDG4 (SET DOMAIN GROUP 4)	Encodes a member of the trxG protein family. Contains a SET domain which is known to be involved in modification of histone tails by methylation. Interacts physically with AMS, but the implications of this interaction are unknown.Overexpression results in plieotrophic developmental defects.	O.I.	C.G.	H.G.
1205.8	100.0	603.9	At5g58190	835931	ECT10	F:unknown;P:unknown;C:unknown;MPFO	O.I.	C.G.	H.G.
1199.5	100.0	241.0	At3g01015	821318	-	F:unknown;P:unknown;C:unknown;PMOF	O.I.	C.G.	H.G.
1179.9	100.0	99.5	At5g53520	835434	ATOPT8 (ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 8)	oligopeptide transporter	O.I.	C.G.	H.G.
1176.0	100.0	346.4	At1g60240	842319	apical meristem formation protein-related	F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	H.G.
1168.0	100.0	134.1	At5g49150	834974	GEX2 (GAMETE EXPRESSED 2)	Encodes a transmembrane domain containing protein expressed in sperm cells.	O.I.	C.G.	H.G.
1164.3	100.0	387.2	At1g23210	838930	AtGH9B6 (Arabidopsis thaliana glycosyl hydrolase 9B6)	F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOF	O.I.	C.G.	H.G.
1155.8	100.0	422.9	At5g55490	835642	GEX1 (GAMETE EXPRESSED PROTEIN 1)	Encodes a transmembrane domain containing protein that is expressed in pollen germ cells.	O.I.	C.G.	H.G.
1151.5	100.0	329.9	At1g19890	838577	MGH3 (MALE-GAMETE-SPECIFIC HISTONE H3)	histone 3.3, male-gamete-specific expression	O.I.	C.G.	H.G.
1148.9	100.0	240.2	At4g00240	826673	PLDBETA2	member of C2-PLD subfamily	O.I.	C.G.	H.G.
1118.2	100.0	144.1	At5g05130	830395	SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein	F:in 7 functions;P:unknown;C:unknown;MOBFPVA	O.I.	C.G.	H.G.
1109.9	100.0	206.8	At5g09800	830840	U-box domain-containing protein	F:ubiquitin-protein ligase activity, binding;P:response to chitin;C:ubiquitin ligase complex;POMBF	O.I.	C.G.	H.G.
1073.3	100.0	241.6	At5g42010	834206	WD-40 repeat family protein	F:signal transducer activity;P:signal transduction, response to salt stress;C:heterotrimeric G-protein complex;MFBOPA	O.I.	C.G.	H.G.
1038.4	100.0	490.5	At5g10950	830962	cylicin-related	F:molecular_function unknown;P:biological_process unknown;C:cytosol;MOFBPVA	O.I.	C.G.	H.G.
1021.9	100.0	584.3	At3g50310	824193	MAPKKK20	member of MEKK subfamily	O.I.	C.G.	H.G.
982.2	100.0	297.0	At2g44190	819026	EDE1 (ENDOSPERM DEFECTIVE 1)	Encodes a novel microtubule binding protein that preferentially associates with nuclear microtubules during mitosis and is essential during the mitotic and cytokinetic stages that generate the endosperm and embryo.	O.I.	C.G.	H.G.
980.0	100.0	326.5	At3g12140	820389	emsy N terminus domain-containing protein / ENT domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
979.6	100.0	153.7	At4g32500	829385	AKT5	member of Stelar K+ outward rectifying channel (SKOR) family	O.I.	C.G.	H.G.
978.4	100.0	211.3	At2g30580	817608	DRIP2 (DREB2A-INTERACTING PROTEIN 2)	Encodes a C3HC4 RING-domain-containing ubiquitin E3 ligase capable of interacting with DREB2A. DRIP2 seems to be involved in regulating stress-related transcriptional changes and drought tolerance.	O.I.	C.G.	H.G.
977.6	100.0	767.9	At3g47440	823898	TIP5	Encodes AtTIP5;1, functions as water and urea channels in pollen.	O.I.	C.G.	H.G.
965.0	100.0	750.0	At4g37280	829882	MRG family protein	F:chromatin binding;P:chromatin assembly or disassembly;C:chromatin, nucleus;MFPOB	O.I.	C.G.	H.G.
935.4	100.0	169.2	At1g52920	841725	GPCR (G PROTEIN COUPLED RECEPTOR)	Encodes a plasma membrane�localized ABA receptor, which interacts with the Gαβγ complex. It has been postulated that the binding of ABA to GCR2 results in the release of the G protein and dissociation of the heterotrimeric complex into Gα and the Gβγ dimer to activate downstream ABA effectors and to trigger the ABA responses.	O.I.	C.G.	H.G.
889.4	100.0	594.3	At5g49900	835053	catalytic/ glucosylceramidase	F:catalytic activity, glucosylceramidase activity;P:glucosylceramide catabolic process, sphingolipid metabolic process;C:integral to membrane, membrane;BPMOA	O.I.	C.G.	H.G.
886.8	100.0	343.3	At5g16630	831525	RAD4	F:damaged DNA binding;P:nucleotide-excision repair;C:nucleus, chloroplast;MFOP	O.I.	C.G.	H.G.
868.5	100.0	390.9	At2g25560	817094	DNAJ heat shock N-terminal domain-containing protein	F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMPFAV	O.I.	C.G.	H.G.
858.7	100.0	184.0	At3g15620	820804	UVR3 (UV REPAIR DEFECTIVE 3)	Required for photorepair of 6-4 photoproducts in Arabidopsis thaliana.	O.I.	C.G.	H.G.
838.0	100.0	151.9	At5g07810	830674	SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein	F:helicase activity, DNA binding, ATP binding, nucleic acid binding, endonuclease activity;P:unknown;C:unknown;MBOFPVA	O.I.	C.G.	H.G.
825.9	100.0	131.4	At1g04880	839388	high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein	F:transcription factor activity;P:regulation of transcription;C:intracellular, nucleus;MOPFBV	O.I.	C.G.	H.G.
824.0	100.0	707.6	At1g71770	843507	PAB5 (POLY(A)-BINDING PROTEIN 5)	Encodes a Class I polyA-binding protein. Expressed in floral organs. Binds polyA sepharose in vitro.	O.I.	C.G.	H.G.
811.5	100.0	297.9	At5g60250	836147	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding, nucleic acid binding;P:unknown;C:unknown;MFPOB	O.I.	C.G.	H.G.
810.0	100.0	813.1	At1g68610	843191	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO	O.I.	C.G.	H.G.
797.6	100.0	621.7	At1g75870	843920	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
797.5	100.0	449.6	At5g67080	836843	MAPKKK19	member of MEKK subfamily	O.I.	C.G.	H.G.
795.4	100.0	552.5	At1g79950	844335	helicase-related	F:in 6 functions;P:regulation of transcription, DNA-dependent, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:mitochondrion;MBOFAPV	O.I.	C.G.	H.G.
794.4	100.0	43.2	At1g32850	840179	UBP11 (UBIQUITIN-SPECIFIC PROTEASE 11)	F:cysteine-type endopeptidase activity, ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MOFPVB	O.I.	C.G.	H.G.
793.4	100.0	132.0	At1g06770	837188	DRIP1 (DREB2A-INTERACTING PROTEIN 1)	Encodes a C3HC4 RING-domain-containing ubiquitin E3 ligase capable of interacting with DREB2A. The DRIP1-GFP fusion protein is nuclear-localized. DRIP1 seems to be involved in regulating stress-related transcriptional changes and drought tolerance.	O.I.	C.G.	H.G.
790.3	100.0	392.0	At1g70590	843396	F-box family protein	F:binding;P:biological_process unknown;C:chloroplast;BOFMPV	O.I.	C.G.	H.G.
781.4	100.0	554.0	At4g35700	829722	zinc finger (C2H2 type) family protein	F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;P	O.I.	C.G.	H.G.
763.1	100.0	200.4	At4g35560	829708	-	F:molecular_function unknown;P:unknown;C:CUL4 RING ubiquitin ligase complex;MOFPB	O.I.	C.G.	H.G.
753.5	100.0	34.5	At2g01920	814723	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related	F:phospholipid binding, binding;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
738.6	100.0	76.3	At5g52340	835310	ATEXO70A2 (exocyst subunit EXO70 family protein A2)	A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.	O.I.	C.G.	H.G.
729.2	100.0	714.7	At1g49290	841352	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
720.8	100.0	237.4	At3g48440	824003	zinc finger (CCCH-type) family protein	F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PMFO	O.I.	C.G.	H.G.
702.9	100.0	121.8	At5g23480	832414	DNA binding	F:DNA binding;P:histone modification, transcription initiation;C:nucleus;P	O.I.	C.G.	H.G.
693.7	100.0	612.0	At1g15430	838114	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
690.7	100.0	246.5	At4g32440	829379	agenet domain-containing protein	F:RNA binding;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
679.5	100.0	155.3	At3g60780	825249	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
653.0	100.0	369.5	At1g50810	3767429	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
633.5	100.0	134.4	At1g68120	843140	BPC3 (BASIC PENTACYSTEINE 3)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;P	O.I.	C.G.	H.G.
632.1	100.0	113.6	At4g39753	830132	kelch repeat-containing F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMBOAVF	O.I.	C.G.	H.G.
629.5	100.0	195.5	At5g54280	835516	ATM2 (ARABIDOPSIS THALIANA MYOSIN 2)	Type VII myosin gene	O.I.	C.G.	H.G.
607.4	100.0	596.8	At4g31420	829269	zinc finger (C2H2 type) family protein	F:transcription factor activity;P:regulation of transcription;C:intracellular;MFOP	O.I.	C.G.	H.G.
604.6	100.0	205.1	At4g38940	830049	kelch repeat-containing F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBOA	O.I.	C.G.	H.G.
597.1	100.0	317.7	At1g78895	844227	-	F:unknown;P:biological_process unknown;C:endomembrane system, endoplasmic reticulum;P	O.I.	C.G.	H.G.
593.3	100.0	132.9	At2g37670	818344	WD-40 repeat family protein	F:signal transducer activity;P:signal transduction;C:heterotrimeric G-protein complex;MFBOPAV	O.I.	C.G.	H.G.
593.2	100.0	141.3	At2g45490	819157	AtAUR3 (ATAURORA3)	Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division. Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems. In interphase cells, the protein is predominantly nuclear. During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle. The protein is concentrated in nuclear dots arranged around the nucleolus and the nuclear periphery in early prophase cells.	O.I.	C.G.	H.G.
590.6	100.0	608.1	At2g39420	818527	esterase/lipase/thioesterase family protein	F:catalytic activity;P:unknown;C:unknown;BOPMFVA	O.I.	C.G.	H.G.
581.4	100.0	99.4	At3g12060	820380	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;PBM	O.I.	C.G.	H.G.
578.5	100.0	251.5	At3g07400	819928	lipase class 3 family protein	F:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;PFOMB	O.I.	C.G.	H.G.
574.2	100.0	176.6	At2g22340	816766	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
563.2	100.0	200.4	At4g02730	828189	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MFOPBAV	O.I.	C.G.	H.G.
560.9	100.0	352.2	At3g07020	819887	UDP-glucose:sterol glucosyltransferase (UGT80A2)	F:transferase activity, transferring glycosyl groups;P:lipid glycosylation, carbohydrate metabolic process, metabolic process;C:plasma membrane, membrane;BMFPOV	O.I.	C.G.	H.G.
555.1	100.0	92.6	At1g17040	838274	SHA (SH2 DOMAIN PROTEIN A)	Encodes a protein that contains an SH2 domain. It can pull down a 120-kD tyrosine-phosphorylated protein in vitro. It is predicted to act as a transcription factor.	O.I.	C.G.	H.G.
548.2	100.0	349.5	At3g06190	819793	BPM2 (BTB-POZ AND MATH DOMAIN 2)	F:protein binding;P:biological_process unknown;C:cellular_component unknown;MPOF	O.I.	C.G.	H.G.
540.5	100.0	354.8	At2g02090	814740	ETL1	F:helicase activity, DNA binding, ATP binding, nucleic acid binding;P:unknown;C:chloroplast;BMOFPVA	O.I.	C.G.	H.G.
532.9	100.0	197.5	At4g39230	830078	isoflavone reductase, putative	encodes a protein whose sequence is similar to phenylcoumaran benzylic ether reductase (PCBER), which catalyzes NADPH-dependent reduction of 8-5' linked lignans such as dehydrodiconiferyl alcohol to give isodihydrodehydrodiconiferyl alcohol.	O.I.	C.G.	H.G.
531.0	100.0	313.4	At5g02100	831841	UNE18 (UNFERTILIZED EMBRYO SAC 18)	Encodes a protein that binds to beta-sitosterol and localizes to the ER. The WFDE motif in ORP3a appears to be important for a direct interaction with PVA12 [Plant VAMP-Associated protein 12]. Mutation of this motif causes ORP3a to relocalize to the Golgi and cytosol. The interaction between PVA12 and ORP3a does not appear to be sterol-dependent.	O.I.	C.G.	H.G.
528.6	100.0	205.2	At3g16860	820941	COBL8 (COBRA-LIKE PROTEIN 8 PRECURSOR)	F:unknown;P:biological_process unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
526.3	100.0	99.4	At5g58760	835990	DDB2 (damaged DNA-binding 2)	F:nucleotide binding, zinc ion binding, nucleic acid binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOBPA	O.I.	C.G.	H.G.
524.5	100.0	376.0	At1g03070	839581	glutamate binding	F:glutamate binding;P:biological_process unknown;C:cellular_component unknown;BOMPFV	O.I.	C.G.	H.G.
501.7	100.0	43.9	At5g28340	832919	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;POF	O.I.	C.G.	H.G.
500.9	100.0	88.3	At3g58800	825049	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PVO	O.I.	C.G.	H.G.
494.7	100.0	131.3	At3g03970	819552	binding	F:binding;P:spliceosome assembly, nuclear mRNA splicing, via spliceosome;C:cellular_component unknown;P	O.I.	C.G.	H.G.
485.6	100.0	81.0	At4g30560	829179	ATCNGC9 (CYCLIC NUCLEOTIDE GATED CHANNEL 9)	member of Cyclic nucleotide gated channel family	O.I.	C.G.	H.G.

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GSM ID	-
Assay name	E-ATMX-35-raw-cel-1574334832
GSE experiment	-

Microarray experiments to specifically-expressed genes

GSM ID - Assay name E-ATMX-35-raw-cel-1574334832 GSE experiment -

GSM ID -

Assay name E-ATMX-35-raw-cel-1574334832

GSE experiment -