Microarray experiments to specifically-expressed genes

GSM ID -
Assay name E-ATMX-35-raw-cel-1574334816
GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
1941.4100.0284.9At2g22600816791KH domain-containing proteinF:RNA binding, nucleic acid binding;P:biological_process unknown;C:unknown;MPFOO.I.C.G.H.G.
1894.9100.0662.6At5g10950830962cylicin-relatedF:molecular_function unknown;P:biological_process unknown;C:cytosol;MOFBPVAO.I.C.G.H.G.
1878.1100.0410.7At2g44190819026EDE1 (ENDOSPERM DEFECTIVE 1)Encodes a novel microtubule binding protein that preferentially associates with nuclear microtubules during mitosis and is essential during the mitotic and cytokinetic stages that generate the endosperm and embryo.O.I.C.G.H.G.
1834.8100.0151.6At1g54240841865DNA bindingF:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;PO.I.C.G.H.G.
1793.4100.0479.2At4g08590826420ORTHL (ORTHRUS-LIKE)F:ubiquitin-protein ligase activity, zinc ion binding;P:protein ubiquitination;C:cytoplasm;MPOFBVO.I.C.G.H.G.
1736.0100.0832.0At5g16100831467unknown proteinF:unknown;P:unknown;C:cellular_component unknown;PO.I.C.G.H.G.
1701.9100.0292.3At4g00240826673PLDBETA2member of C2-PLD subfamilyO.I.C.G.H.G.
1669.9100.0160.3At5g49150834974GEX2 (GAMETE EXPRESSED 2)Encodes a transmembrane domain containing protein expressed in sperm cells.O.I.C.G.H.G.
1624.1100.0143.6At2g17090816214SSP (SHORT SUSPENSOR)F:protein tyrosine kinase activity, binding, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:cellular_component unknown;PMOBVFO.I.C.G.H.G.
1578.7100.0216.8At2g37670818344WD-40 repeat family proteinF:signal transducer activity;P:signal transduction;C:heterotrimeric G-protein complex;MFBOPAVO.I.C.G.H.G.
1547.8100.0607.0At1g08600837382ATRXF:helicase activity, DNA binding, nucleic acid binding, ATP binding;P:unknown;C:unknown;MOBFPVAO.I.C.G.H.G.
1542.2100.0138.7At1g554103767461-F:unknown;P:unknown;C:unknownO.I.C.G.H.G.
1500.1100.0707.9At3g50310824193MAPKKK20member of MEKK subfamilyO.I.C.G.H.G.
1493.5100.0285.0At5g42010834206WD-40 repeat family proteinF:signal transducer activity;P:signal transduction, response to salt stress;C:heterotrimeric G-protein complex;MFBOPAO.I.C.G.H.G.
1452.9100.0276.5At4g35560829708-F:molecular_function unknown;P:unknown;C:CUL4 RING ubiquitin ligase complex;MOFPBO.I.C.G.H.G.
1420.0100.0664.3At4g30860829210SDG4 (SET DOMAIN GROUP 4)Encodes a member of the trxG protein family. Contains a SET domain which is known to be involved in modification of histone tails by methylation. Interacts physically with AMS, but the implications of this interaction are unknown.Overexpression results in plieotrophic developmental defects.O.I.C.G.H.G.
1415.8100.0654.4At5g58190835931ECT10F:unknown;P:unknown;C:unknown;MPFOO.I.C.G.H.G.
1415.4100.0561.0At1g64610842769WD-40 repeat family proteinF:signal transducer activity;P:signal transduction;C:heterotrimeric G-protein complex;MFBOPAO.I.C.G.H.G.
1405.4100.0312.4At1g12370837792PHR1 (PHOTOLYASE 1)encodes an amino acid sequence with significant homology to the recently characterized type II photolyases. The uvr2-1 mutant is unable to remove CPDs in vivo, and plant extracts lack detectable photolyase activity , is sensitive to UV-B and is an alleleO.I.C.G.H.G.
1391.5100.0464.6At1g26840839227ORC6 (ORIGIN RECOGNITION COMPLEX PROTEIN 6)Origin Recognition Complex subunit 6. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors.O.I.C.G.H.G.
1386.0100.0193.7At4g20500827798transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
1365.3100.096.3At3g49450824107F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
1364.8100.0203.3At1g75770843910unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
1304.4100.0300.2At4g17483827461palmitoyl protein thioesterase family proteinF:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFOO.I.C.G.H.G.
1298.4100.0408.9At1g23210838930AtGH9B6 (Arabidopsis thaliana glycosyl hydrolase 9B6)F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOFO.I.C.G.H.G.
1274.8100.0197.5At1g52920841725GPCR (G PROTEIN COUPLED RECEPTOR)Encodes a plasma membrane–localized ABA receptor, which interacts with the Gαβγ complex. It has been postulated that the binding of ABA to GCR2 results in the release of the G protein and dissociation of the heterotrimeric complex into Gα and the Gβγ dimer to activate downstream ABA effectors and to trigger the ABA responses.O.I.C.G.H.G.
1186.2100.0468.0At2g36660818238PAB7 (POLY(A) BINDING PROTEIN 7)polyadenylate-binding protein, putative / PABP, putative. Member of the class III family of PABP proteins.O.I.C.G.H.G.
1152.8100.0315.9At3g16380820885PAB6 (POLY(A) BINDING PROTEIN 6)polyadenylate-binding protein, putative / PABP, putative, similar to polyadenylate-binding protein (poly(A)-binding protein) from {Arabidopsis thaliana} SP:P42731, (Cucumis sativus) GI:7528270, {Homo sapiens} SP:Q13310, {Arabidopsis thaliana} SP:Q05196; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM). Member of the class III family of PABP proteins.O.I.C.G.H.G.
1143.8100.0448.6At2g25560817094DNAJ heat shock N-terminal domain-containing proteinF:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMPFAVO.I.C.G.H.G.
1134.9100.0234.4At3g01015821318-F:unknown;P:unknown;C:unknown;PMOFO.I.C.G.H.G.
1129.0100.0151.8At4g39753830132kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMBOAVFO.I.C.G.H.G.
1124.2100.0338.7At1g60240842319apical meristem formation protein-relatedF:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PO.I.C.G.H.G.
1112.6100.0819.2At3g47440823898TIP5Encodes AtTIP5;1, functions as water and urea channels in pollen.O.I.C.G.H.G.
1109.9100.0663.9At5g49900835053catalytic/ glucosylceramidaseF:catalytic activity, glucosylceramidase activity;P:glucosylceramide catabolic process, sphingolipid metabolic process;C:integral to membrane, membrane;BPMOAO.I.C.G.H.G.
1094.5100.0648.1At1g79950844335helicase-relatedF:in 6 functions;P:regulation of transcription, DNA-dependent, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:mitochondrion;MBOFAPVO.I.C.G.H.G.
1083.9100.0558.8At3g22760821847SOL1CXC domain containing TSO1-like protein 1. The gene is expressed in stamens, pollen mother cells, and immature ovules.O.I.C.G.H.G.
1077.0100.0408.2At5g55490835642GEX1 (GAMETE EXPRESSED PROTEIN 1)Encodes a transmembrane domain containing protein that is expressed in pollen germ cells.O.I.C.G.H.G.
1022.1100.0198.5At5g09800830840U-box domain-containing proteinF:ubiquitin-protein ligase activity, binding;P:response to chitin;C:ubiquitin ligase complex;POMBFO.I.C.G.H.G.
1015.5100.0367.3At5g16630831525RAD4F:damaged DNA binding;P:nucleotide-excision repair;C:nucleus, chloroplast;MFOPO.I.C.G.H.G.
1006.8100.0162.1At2g06040815159-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOBO.I.C.G.H.G.
995.4100.0292.3At1g77250844061PHD finger family proteinF:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:unknown;MPFOO.I.C.G.H.G.
994.3100.091.4At5g53520835434ATOPT8 (ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 8)oligopeptide transporterO.I.C.G.H.G.
984.1100.0896.2At1g68610843191unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOO.I.C.G.H.G.
976.3100.0218.2At1g77410844078BGAL16 (beta-galactosidase 16)F:cation binding, sugar binding, beta-galactosidase activity, catalytic activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:endomembrane system, beta-galactosidase complex;MBPFOAO.I.C.G.H.G.
963.4100.0319.8At5g27610832823DNA binding / transcription factorF:transcription factor activity, DNA binding;P:biological_process unknown;C:cellular_component unknown;MOPFBVO.I.C.G.H.G.
960.0100.0165.5At1g68120843140BPC3 (BASIC PENTACYSTEINE 3)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PO.I.C.G.H.G.
934.9100.0486.8At5g67080836843MAPKKK19member of MEKK subfamilyO.I.C.G.H.G.
912.2100.0251.9At4g38940830049kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBOAO.I.C.G.H.G.
909.9100.0124.1At5g39650833961unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
908.9100.0148.9At5g13700831215ATPAO1 (ARABIDOPSIS THALIANA POLYAMINE OXIDASE 1)Encodes a protein with polyamine oxidase activity. The mRNA of this gene is only expressed in very low amounts in the organs where it was detected (light-grown plants).O.I.C.G.H.G.
893.8100.0592.6At4g35700829722zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PO.I.C.G.H.G.
876.3100.0287.8At1g19890838577MGH3 (MALE-GAMETE-SPECIFIC HISTONE H3)histone 3.3, male-gamete-specific expressionO.I.C.G.H.G.
865.8100.0198.8At2g30580817608DRIP2 (DREB2A-INTERACTING PROTEIN 2)Encodes a C3HC4 RING-domain-containing ubiquitin E3 ligase capable of interacting with DREB2A. DRIP2 seems to be involved in regulating stress-related transcriptional changes and drought tolerance.O.I.C.G.H.G.
862.1100.0646.4At1g75870843920unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
858.2100.0132.4At3g60760825247unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
852.0100.0153.2At5g07810830674SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing proteinF:helicase activity, DNA binding, ATP binding, nucleic acid binding, endonuclease activity;P:unknown;C:unknown;MBOFPVAO.I.C.G.H.G.
851.1100.0305.1At5g60250836147zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding, nucleic acid binding;P:unknown;C:unknown;MFPOBO.I.C.G.H.G.
848.1100.0703.1At4g37280829882MRG family proteinF:chromatin binding;P:chromatin assembly or disassembly;C:chromatin, nucleus;MFPOBO.I.C.G.H.G.
847.8100.0770.6At1g49290841352unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
831.9100.0649.0At5g18620831980CHR17 (CHROMATIN REMODELING FACTOR17)F:in 7 functions;P:ATP-dependent chromatin remodeling, chromatin remodeling;C:nucleus, chromatin remodeling complex;MOFBPVAO.I.C.G.H.G.
831.8100.0402.2At1g70590843396F-box family proteinF:binding;P:biological_process unknown;C:chloroplast;BOFMPVO.I.C.G.H.G.
816.7100.0172.6At5g05510830434protein kinase-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOBO.I.C.G.H.G.
815.3100.0160.5At1g48310841251CHR18F:helicase activity, DNA binding, nucleic acid binding, ATP binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVAO.I.C.G.H.G.
764.3100.0411.1At3g07020819887UDP-glucose:sterol glucosyltransferase (UGT80A2)F:transferase activity, transferring glycosyl groups;P:lipid glycosylation, carbohydrate metabolic process, metabolic process;C:plasma membrane, membrane;BMFPOVO.I.C.G.H.G.
727.2100.0664.7At1g71770843507PAB5 (POLY(A)-BINDING PROTEIN 5)Encodes a Class I polyA-binding protein. Expressed in floral organs. Binds polyA sepharose in vitro.O.I.C.G.H.G.
676.6100.0221.6At1g18520838433TET11 (TETRASPANIN11)Member of TETRASPANIN familyO.I.C.G.H.G.
659.8100.0240.9At4g32440829379agenet domain-containing proteinF:RNA binding;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
658.3100.0152.8At3g60780825249unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
634.5100.0103.8At3g12060820380unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PBMO.I.C.G.H.G.
618.8100.0602.4At4g31420829269zinc finger (C2H2 type) family proteinF:transcription factor activity;P:regulation of transcription;C:intracellular;MFOPO.I.C.G.H.G.
614.7100.091.1At4g30560829179ATCNGC9 (CYCLIC NUCLEOTIDE GATED CHANNEL 9)member of Cyclic nucleotide gated channel familyO.I.C.G.H.G.
592.6100.068.4At5g52340835310ATEXO70A2 (exocyst subunit EXO70 family protein A2)A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.O.I.C.G.H.G.
588.0100.046.4At3g10180820180kinesin motor protein-relatedF:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOBFPAVO.I.C.G.H.G.
579.0100.0296.1At1g79470844285inosine-5'-monophosphate dehydrogenaseF:IMP dehydrogenase activity, catalytic activity;P:GMP biosynthetic process, metabolic process;C:unknown;OBMFAPVO.I.C.G.H.G.
578.1100.0239.1At3g14890820718phosphoesteraseF:DNA binding, catalytic activity, zinc ion binding;P:unknown;C:unknown;MOFPVBAO.I.C.G.H.G.
563.6100.0259.1At1g70610843398ATTAP1member of TAP subfamilyO.I.C.G.H.G.
562.8100.0102.2At5g05130830395SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing proteinF:in 7 functions;P:unknown;C:unknown;MOBFPVAO.I.C.G.H.G.
553.8100.036.0At1g32850840179UBP11 (UBIQUITIN-SPECIFIC PROTEASE 11)F:cysteine-type endopeptidase activity, ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MOFPVBO.I.C.G.H.G.
553.2100.0183.3At5g54280835516ATM2 (ARABIDOPSIS THALIANA MYOSIN 2)Type VII myosin geneO.I.C.G.H.G.
537.1100.0346.0At3g06190819793BPM2 (BTB-POZ AND MATH DOMAIN 2)F:protein binding;P:biological_process unknown;C:cellular_component unknown;MPOFO.I.C.G.H.G.
534.1100.0195.1At4g02730828189transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MFOPBAVO.I.C.G.H.G.
528.5100.0112.9At4g32500829385AKT5member of Stelar K+ outward rectifying channel (SKOR) familyO.I.C.G.H.G.
527.2100.0370.0At3g54750824640unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOO.I.C.G.H.G.
522.0100.0571.7At2g39420818527esterase/lipase/thioesterase family proteinF:catalytic activity;P:unknown;C:unknown;BOPMFVAO.I.C.G.H.G.
520.4100.0104.3At1g04880839388high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing proteinF:transcription factor activity;P:regulation of transcription;C:intracellular, nucleus;MOPFBVO.I.C.G.H.G.
505.5100.0198.8At3g48440824003zinc finger (CCCH-type) family proteinF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PMFOO.I.C.G.H.G.
501.6100.078.4At2g27120817254TIL2 (TILTED 2)Encodes a protein with similarity to DNA polymerase epsilon catalytic subunit. Based on yeast two hybrid analysis, not predicted to be a subunit of the DNA polymerase epsilon complex. No phenotype observed in homozygous mutant embryos or plants but in combination with TIL1-1/til1-1 heterozygotes arrest earlier than til1 homozygotes suggesting TIL2 functions redundantly with TIL1.O.I.C.G.H.G.
501.1100.0418.7At5g26820832740ATIREG3 (IRON-REGULATED PROTEIN 3)F:unknown;P:unknown;C:membrane;MPFOBO.I.C.G.H.G.
500.2100.0117.5At2g31650817721ATX1 (ARABIDOPSIS HOMOLOGUE OF TRITHORAX)Encodes a homolog of trithorax, a histone-lysine N-methyltransferase. Involved in trimethylating histone H3-lysine 4. Involved in the formation, placement, and identity of flower organs. Role in regulation of homeotic genes. Functions as a receptor of phosphatidylinositol 5-phosphate. Localizes to cytoplasm, plasma membrane and nuclei, shifting to nuclei in the presence of PI5P.O.I.C.G.H.G.
488.6100.0513.6At1g15430838114-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
486.3100.0138.5At3g15620820804UVR3 (UV REPAIR DEFECTIVE 3)Required for photorepair of 6-4 photoproducts in Arabidopsis thaliana.O.I.C.G.H.G.
486.2100.086.5At1g03445838804BSU1 (BRI1 SUPPRESSOR 1)encodes a serine–threonine protein phosphatase with an N-terminal Kelch-repeat domain, which is nuclear localized and expressed preferentially in elongating cells. Genetic evidence suggest that this gene plays a redundant role (along with other members of the same gene family) in modulating growth in response to brassinosteroid.O.I.C.G.H.G.
477.0100.063.3At1g35530840448DEAD/DEAH box helicase, putativeF:in 6 functions;P:unknown;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
462.3100.080.7At1g18940838475nodulin family proteinF:unknown;P:unknown;C:endomembrane system;BPOFMAO.I.C.G.H.G.
456.2100.086.6At2g21930816729F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
455.4100.0223.2At3g07400819928lipase class 3 family proteinF:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;PFOMBO.I.C.G.H.G.
445.2100.0117.7At3g450908236442-phosphoglycerate kinase-relatedF:unknown;P:unknown;C:unknown;BOMFPVAO.I.C.G.H.G.
430.1100.0299.9At1g508103767429transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
427.4100.096.9At1g06770837188DRIP1 (DREB2A-INTERACTING PROTEIN 1)Encodes a C3HC4 RING-domain-containing ubiquitin E3 ligase capable of interacting with DREB2A. The DRIP1-GFP fusion protein is nuclear-localized. DRIP1 seems to be involved in regulating stress-related transcriptional changes and drought tolerance.O.I.C.G.H.G.
415.0100.093.6At5g23480832414DNA bindingF:DNA binding;P:histone modification, transcription initiation;C:nucleus;PO.I.C.G.H.G.



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