Microarray experiments to specifically-expressed genes

GSM ID -
Assay name E-ATMX-33-raw-cel-1562596310
GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
175.9100.0137.1At1g13650837926-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVAO.I.C.G.H.G.
106.599.9332.0At1g55960842047-F:molecular_function unknown;P:biological_process unknown;C:unknown;MPOO.I.C.G.H.G.
69.299.968.6At1g59930842287unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
63.999.873.0At5g56850835787unknown proteinF:unknown;P:unknown;C:unknown;OMBFPAVO.I.C.G.H.G.
62.499.8152.7At3g59780825147-F:molecular_function unknown;P:biological_process unknown;C:nucleus, chloroplast;OBMFPVO.I.C.G.H.G.
55.199.880.9At5g54630835552zinc finger protein-relatedF:transcription factor activity;P:regulation of transcription;C:intracellular;PFMOO.I.C.G.H.G.
49.199.8595.7At3g15850820828FAD5 (FATTY ACID DESATURASE 5)Chloroplastic enzyme responsible for the synthesis of 16:1 fatty acids from galactolipids and sulpholipids. Uses ferredoxin as electron donor.O.I.C.G.H.G.
44.599.85.7At2g106603767861transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
43.399.893.1At2g131603768696transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
42.099.848.2At1g73870843723zinc finger (B-box type) family proteinF:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;POO.I.C.G.H.G.
39.899.853.1At4g25280828631adenylate kinase family proteinF:nucleobase, nucleoside, nucleotide kinase activity, nucleotide kinase activity, phosphotransferase activity, phosphate group as acceptor, ATP binding;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:unknown;BOMFPAO.I.C.G.H.G.
39.499.8152.4At4g10120826603ATSPS4FEncodes a protein with putative sucrose-phosphate synthase activity.O.I.C.G.H.G.
36.399.759.8At1g19715838560jacalin lectin family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOBO.I.C.G.H.G.
35.199.713.5At1g345303766917transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
34.799.753.6At1g362603766987transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
34.399.734.8At4g38950830050kinesin motor family proteinF:microtubule motor activity, ATP binding;P:microtubule-based process, microtubule-based movement;C:microtubule associated complex;MOPFO.I.C.G.H.G.
32.099.7154.4At1g51805841607leucine-rich repeat protein kinase, putativeF:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
31.099.713.2At3g46370823783leucine-rich repeat protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVAO.I.C.G.H.G.
30.299.780.5At1g30520839932AAE14 (Acyl-Activating Enzyme 14)Encodes a chloroplast O-succinylbenzoyl-CoA ligase. Involved in phylloquinone biosynthesis. Knock mutant is seedling lethal.O.I.C.G.H.G.
29.899.785.5At4g13670827001PTAC5 (PLASTID TRANSCRIPTIONALLY ACTIVE5)F:unfolded protein binding, heat shock protein binding;P:protein folding, metabolic process;C:plastid chromosome, chloroplast thylakoid membrane, chloroplast, nucleoid, chloroplast envelope;BOMPFAVO.I.C.G.H.G.
29.199.729.6At2g29300817479tropinone reductase, putative / tropine dehydrogenase, putativeF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAVO.I.C.G.H.G.
28.799.766.2At1g60590842353polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:unknown;FPBMOVAO.I.C.G.H.G.
28.099.711.6At5g10250830889DOT3 (DEFECTIVELY ORGANIZED TRIBUTARIES 3)Encodes a protein with an N-terminal BTB/POZ domain and a C-terminal NPH3 family domain. dot3 mutants have defects in shoot and primary root growth and produce an aberrant parallel venation pattern in juvenile leaves.O.I.C.G.H.G.
25.899.7200.8At1g44000841000unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PBOO.I.C.G.H.G.
25.499.631.1At1g528503767446transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
24.999.676.6At5g01015831731unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
24.299.6287.3At5g48490834905protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
24.299.680.7At5g38510833839rhomboid family proteinF:molecular_function unknown;P:biological_process unknown;C:integral to membrane;BOMPFAO.I.C.G.H.G.
23.199.629.8At1g29720839850protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
22.499.6160.2At5g28500832943unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;BPOO.I.C.G.H.G.
21.699.641.6At5g07240830615IQD24 (IQ-domain 24)F:calmodulin binding;P:biological_process unknown;C:unknown;PMOBO.I.C.G.H.G.
20.099.655.5At2g32100817770OFP16 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16)F:unknown;P:biological_process unknown;C:cellular_component unknown;PBO.I.C.G.H.G.
19.899.639.9At3g19480821482D-3-phosphoglycerate dehydrogenase, putative / 3-PGDH, putativeF:in 7 functions;P:L-serine biosynthetic process, metabolic process;C:mitochondrion, chloroplast;BOFMPAVO.I.C.G.H.G.
19.799.6274.7At2g23590816891MES8 (METHYL ESTERASE 8)Encodes a protein shown to have carboxylesterase activity in vitro. It has similarity to the SABP2 methyl salicylate esterase from tobacco. This protein does not act on methyl IAA, methyl JA, MeSA, MeGA4, or MEGA9 in vitro.O.I.C.G.H.G.
19.499.627.3At5g20220832144zinc knuckle (CCHC-type) family proteinF:unfolded protein binding, heat shock protein binding, zinc ion binding, nucleic acid binding;P:protein folding;C:unknown;VMFOPBO.I.C.G.H.G.
19.199.6110.2At5g13770831222pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POFMABO.I.C.G.H.G.
19.099.519.6At1g55930842044CBS domain-containing protein / transporter associated domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOMFPAO.I.C.G.H.G.
18.999.5288.8At1g17220838293FUG1 (fu-gaeri1)Encodes a chloroplast localized protein with similarity to translation initiation factor 2. Can complement loss of INFB in E.coli suggesting FUG1 does function as a translation initiation factor in vivo. Identified as a suppressor of the leaf variegation mutant var2-6. Suppression is only seen in hypomorphs as complete loss of function alleles are embryo lethal.O.I.C.G.H.G.
18.699.5117.8At4g10060826597catalytic/ glucosylceramidaseF:catalytic activity, glucosylceramidase activity;P:glucosylceramide catabolic process, sphingolipid metabolic process;C:vacuole;BMPOAO.I.C.G.H.G.
18.399.5231.5At1g55480841995binding / protein bindingF:protein binding, binding;P:unknown;C:chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast envelope;PBOMFO.I.C.G.H.G.
17.699.566.5At3g22420821810WNK2 (WITH NO K 2)Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. Its transcription is under the control of circadian rhythms.O.I.C.G.H.G.
17.699.545.8At1g70610843398ATTAP1member of TAP subfamilyO.I.C.G.H.G.
17.499.539.3At5g44870834517disease resistance protein (TIR-NBS-LRR class), putativeF:protein binding, transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAO.I.C.G.H.G.
17.199.523.9At3g50240824186KICP-02Encodes a kinesin-related protein.O.I.C.G.H.G.
17.099.544.2At2g30150817567UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVOFO.I.C.G.H.G.
16.799.521.2At5g46240834666KAT1 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 1)Encodes a potassium channel protein (KAT1). ABA triggers KAT1 endocytosis both in epidermal cells as well as guard cells. Upon removal of ABA, KAT1 is recycled back to the plasma membrane. KAT1 is localized within 0.50.6 μm diameter microdomains at the plasma membrane surface.O.I.C.G.H.G.
16.499.567.0At1g62250842522unknown proteinF:unknown;P:unknown;C:chloroplast;PO.I.C.G.H.G.
16.299.512.6At1g66840843002-F:unknown;P:biological_process unknown;C:unknown;MOBFPAVO.I.C.G.H.G.
15.699.556.5At3g17040820961HCF107 (HIGH CHLOROPHYLL FLUORESCENT 107)It is a RNA tetratricopeptide repeat-containing protein required for normal processing of transcripts from the polycistronic chloroplast psbB-psbT-psbH-petB-petD operon coding for proteins of the photosystem II and cytochrome b6/f complexes. Localizes to the chloroplast membrane. Involved in regulating plastidial gene expression and biogenesis.O.I.C.G.H.G.
15.599.58.7At5g41140834116unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVO.I.C.G.H.G.
15.499.583.8At2g22980816829serine-type carboxypeptidaseF:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBOO.I.C.G.H.G.
15.199.417.1At5g40380834036protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
14.799.499.9At3g16000820845MFP1 (MAR BINDING FILAMENT-LIKE PROTEIN 1)encodes a DNA-binding protein that binds to plastid DNA non-specifically and is associated with nucleoids and thylakoid membranes. The expression of the gene is correlated with the development of thylakoid membranes.O.I.C.G.H.G.
14.799.411.0At1g11300837672ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar bindingF:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
14.499.458.5At3g01550821114PPT2 (PHOSPHOENOLPYRUVATE (PEP)/PHOSPHATE TRANSLOCATOR 2)F:antiporter activity, triose-phosphate transmembrane transporter activity;P:triose phosphate transport, transport;C:integral to membrane, chloroplast, membrane;PMFOBAO.I.C.G.H.G.
14.299.4125.3At4g37610829915BT5 (BTB AND TAZ DOMAIN PROTEIN 5)BTB and TAZ domain protein. Located in cytoplasm and expressed in fruit, flower and leaves.O.I.C.G.H.G.
14.299.472.6At5g25630832639pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;POMFBAO.I.C.G.H.G.
14.299.452.8At1g50450841467binding / catalyticF:binding, catalytic activity;P:metabolic process;C:chloroplast;BOFMPAO.I.C.G.H.G.
14.199.464.3At5g17670831633hydrolase, acting on ester bondsF:hydrolase activity, acting on ester bonds;P:intracellular protein transport, GPI anchor metabolic process;C:chloroplast, chloroplast envelope;BOPO.I.C.G.H.G.
14.099.450.2At1g22430838849alcohol dehydrogenase, putativeF:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:cellular_component unknown;BOPFMAVO.I.C.G.H.G.
13.899.4444.1At1g76080843940CDSP32 (CHLOROPLASTIC DROUGHT-INDUCED STRESS PROTEIN OF 32 KD)Encodes a thioredoxin localized in chloroplast stroma. Known as CDSP32 (CHLOROPLASTIC DROUGHT-INDUCED STRESS PROTEIN OF 32 KD).O.I.C.G.H.G.
13.799.4121.4At5g38520833840hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:chloroplast, chloroplast envelope;BOMPFAVO.I.C.G.H.G.
13.699.4100.4At3g54500824615-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBO.I.C.G.H.G.
13.699.461.2At1g26560839196BGLU40 (BETA GLUCOSIDASE 40)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:apoplast, chloroplast;BOPMFAO.I.C.G.H.G.
13.599.4277.4At4g09010826480APX4 (ASCORBATE PEROXIDASE 4)Encodes a microsomal ascorbate peroxidase APX4. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms.O.I.C.G.H.G.
13.599.429.8At4g32280829361IAA29 (INDOLE-3-ACETIC ACID INDUCIBLE 29)Auxin inducible protein.O.I.C.G.H.G.
13.499.4146.3At1g58290842198HEMA1Encodes a protein with glutamyl-tRNA reductase (GluTR) activity, catalyzing the NADPH-dependent reduction of Glu-tRNA(Glu) to glutamate 1-semialdehyde (GSA) with the release of free tRNA(Glu). It is involved in the early steps of chlorophyll biosynthesis.O.I.C.G.H.G.
13.499.4110.9At5g06980830589unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMO.I.C.G.H.G.
13.199.4170.8At5g35970833589DNA-binding protein, putativeF:DNA binding;P:biological_process unknown;C:chloroplast, chloroplast envelope;BMOFPAO.I.C.G.H.G.
13.199.475.0At1g20650838654ATP binding / protein kinase/ protein serine/threonine kinaseF:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
13.099.4606.3At5g13630831207GUN5 (GENOMES UNCOUPLED 5)Encodes magnesium chelatase involved in plastid-to-nucleus signal transduction.O.I.C.G.H.G.
12.999.3595.8At3g55800824746SBPASE (sedoheptulose-bisphosphatase)Encodes the chloroplast enzyme sedoheptulose-1,7-bisphosphatase (SBPase), involved in the carbon reduction of the Calvin cycle. Increase in SBPase activity in transgenic lines accumulate up to 50% more sucrose and starch than wild-type.O.I.C.G.H.G.
12.799.370.5At1g14280837989PKS2 (PHYTOCHROME KINASE SUBSTRATE 2)Encodes phytochrome kinase substrate 2. PKS proteins are critical for hypocotyl phototropism.O.I.C.G.H.G.
12.699.343.5At1g75100843847JAC1 (J-DOMAIN PROTEIN REQUIRED FOR CHLOROPLAST ACCUMULATION RESPONSE 1)Contains a J-domain at the C-terminus which is similar to the J-domain of auxilin, a clathrin-uncoating factor in cow, yeast and worm. Arabidopsis contains 6 other proteins similar to auxilin. Expressed in leaves and stems, but not in roots. Localized in the cytoplasm. Required for the chloroplast accumulation response, but not for the avoidance response. No molecular function known.O.I.C.G.H.G.
12.699.337.9At3g53920824559SIGC (RNA POLYMERASE SIGMA-SUBUNIT C)Encodes a sigma-like transcription factor, Sigma 3 (SIG3 or SIGC). As a subunit of chloroplast RNA polymerase, SIG3 confers the ability to recognize promoter sequences on the core enzyme. SIG3 transcribes specifically the psbN gene in plastids.O.I.C.G.H.G.
12.599.3235.8At2g42220818822rhodanese-like domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;OBPAMO.I.C.G.H.G.
12.499.327.8At1g331303766887transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
11.999.353.8At3g23410821922alcohol oxidase-relatedEncodes a fatty alcohol oxidase.O.I.C.G.H.G.
11.899.3286.3At5g23060832370CaS (Calcium sensing receptor)F:unknown;P:unknown;C:thylakoid, mitochondrion, chloroplast thylakoid membrane, chloroplast;PBOFMO.I.C.G.H.G.
11.899.3103.5At4g31780829306MGD1 (MONOGALACTOSYL DIACYLGLYCEROL SYNTHASE 1)Encodes an A-type monogalactosyldiacylglycerol (MGDG) synthase. It represents the isoform responsible for the bulk of MGDG synthesis in Arabidopsis.O.I.C.G.H.G.
11.699.359.9At1g51110841534plastid-lipid associated protein PAP / fibrillin family proteinF:structural molecule activity;P:tryptophan biosynthetic process;C:chloroplast thylakoid membrane, chloroplast, membrane;PBOO.I.C.G.H.G.
11.599.3183.6At3g01480821137CYP38 (cyclophilin 38)Encodes a chloroplast cyclophilin functioning in the assembly and maintenance of photosystem II (PSII) supercomplexes.O.I.C.G.H.G.
11.599.342.9At2g42190818819unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBAO.I.C.G.H.G.
11.599.339.9At2g28550817403RAP2.7 (RELATED TO AP2.7)F:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent, vegetative to reproductive phase transition;C:nucleus;POBVO.I.C.G.H.G.
11.599.338.5At5g13730831218SIG4 (SIGMA FACTOR 4)Encodes sigma 4 factor, involved in regulating the activity of the plastid-encoded RNA polymerase PEP. Regulates the overall quantity of NDH complexes and thus influences NDH activity.O.I.C.G.H.G.
11.499.350.6At5g48220834875indole-3-glycerol phosphate synthase, putativeF:indole-3-glycerol-phosphate synthase activity, catalytic activity;P:metabolic process, tryptophan metabolic process;C:chloroplast, chloroplast stroma;BOAFPO.I.C.G.H.G.
11.499.325.6At3g03770821164leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
11.099.291.6At5g35170833471adenylate kinase family proteinF:nucleobase, nucleoside, nucleotide kinase activity, nucleotide kinase activity, phosphotransferase activity, phosphate group as acceptor, adenylate kinase activity, ATP binding;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, anaerobic respiration, nucleotide metabolic process;C:chloroplast thylakoid membrane, chloroplast, chloroplast envelope;BOMFPAO.I.C.G.H.G.
10.999.238.7At4g24700828572unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
10.899.223.3At1g18810838463phytochrome kinase substrate-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBVO.I.C.G.H.G.
10.899.27.9At3g09160820071RNA recognition motif (RRM)-containing proteinF:nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
10.799.258.7At1g15730838142PRLI-interacting factor L, putativeF:unknown;P:unknown;C:unknown;OBMFPAVO.I.C.G.H.G.
10.699.271.3At3g55630824729ATDFD (A. THALIANA DHFS-FPGS HOMOLOG D)F:tetrahydrofolylpolyglutamate synthase activity;P:one-carbon compound metabolic process;C:cytosol;BOFMPAO.I.C.G.H.G.
10.599.246.0At5g04810830360pentatricopeptide (PPR) repeat-containing proteinF:nucleotide binding, nucleic acid binding;P:unknown;C:chloroplast;PMOFBVAO.I.C.G.H.G.
10.599.245.2At4g27430828851CIP7 (COP1-INTERACTING PROTEIN 7)Positive regulator of light-regulated genes. Novel nuclear protein which requires light for its high level expression.O.I.C.G.H.G.
10.599.230.3At4g037903770155transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
10.599.213.2At1g203903766766transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
10.399.246.7At2g32530817814ATCSLB03encodes a gene similar to cellulose synthaseO.I.C.G.H.G.
10.299.280.2At5g44680834497methyladenine glycosylase family proteinF:DNA-3-methyladenine glycosylase I activity, catalytic activity;P:DNA repair, base-excision repair;C:unknown;BOPAMFO.I.C.G.H.G.
10.299.270.3At5g22620832325phosphoglycerate/bisphosphoglycerate mutase family proteinF:catalytic activity;P:metabolic process;C:chloroplast;BOMFPAO.I.C.G.H.G.



Back to the CoP portal site

Back to the KAGIANA project homepage