Microarray experiments to specifically-expressed genes

GSM ID -
Assay name E-ATMX-33-raw-cel-1562596264
GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
290.8100.0548.6At1g55960842047-F:molecular_function unknown;P:biological_process unknown;C:unknown;MPOO.I.C.G.H.G.
159.799.9115.5At5g56850835787unknown proteinF:unknown;P:unknown;C:unknown;OMBFPAVO.I.C.G.H.G.
140.899.9122.7At1g13650837926-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVAO.I.C.G.H.G.
98.899.921.8At5g10250830889DOT3 (DEFECTIVELY ORGANIZED TRIBUTARIES 3)Encodes a protein with an N-terminal BTB/POZ domain and a C-terminal NPH3 family domain. dot3 mutants have defects in shoot and primary root growth and produce an aberrant parallel venation pattern in juvenile leaves.O.I.C.G.H.G.
76.999.965.3At1g73870843723zinc finger (B-box type) family proteinF:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;POO.I.C.G.H.G.
71.199.970.9At4g25280828631adenylate kinase family proteinF:nucleobase, nucleoside, nucleotide kinase activity, nucleotide kinase activity, phosphotransferase activity, phosphate group as acceptor, ATP binding;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:unknown;BOMFPAO.I.C.G.H.G.
62.199.8191.4At4g10120826603ATSPS4FEncodes a protein with putative sucrose-phosphate synthase activity.O.I.C.G.H.G.
52.499.8113.4At4g13670827001PTAC5 (PLASTID TRANSCRIPTIONALLY ACTIVE5)F:unfolded protein binding, heat shock protein binding;P:protein folding, metabolic process;C:plastid chromosome, chloroplast thylakoid membrane, chloroplast, nucleoid, chloroplast envelope;BOMPFAVO.I.C.G.H.G.
43.899.839.3At4g38950830050kinesin motor family proteinF:microtubule motor activity, ATP binding;P:microtubule-based process, microtubule-based movement;C:microtubule associated complex;MOPFO.I.C.G.H.G.
40.299.867.9At2g30150817567UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVOFO.I.C.G.H.G.
40.099.8537.4At3g15850820828FAD5 (FATTY ACID DESATURASE 5)Chloroplastic enzyme responsible for the synthesis of 16:1 fatty acids from galactolipids and sulpholipids. Uses ferredoxin as electron donor.O.I.C.G.H.G.
38.699.838.5At1g29720839850protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
36.899.760.2At1g19715838560jacalin lectin family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOBO.I.C.G.H.G.
35.799.718.7At1g66840843002-F:unknown;P:biological_process unknown;C:unknown;MOBFPAVO.I.C.G.H.G.
33.099.7156.5At3g54500824615-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBO.I.C.G.H.G.
32.499.790.0At3g22420821810WNK2 (WITH NO K 2)Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. Its transcription is under the control of circadian rhythms.O.I.C.G.H.G.
32.299.781.8At4g32190829352centromeric protein-relatedF:unknown;P:unknown;C:unknown;MOBFPAVO.I.C.G.H.G.
32.299.750.8At5g07240830615IQD24 (IQ-domain 24)F:calmodulin binding;P:biological_process unknown;C:unknown;PMOBO.I.C.G.H.G.
30.999.786.7At3g23410821922alcohol oxidase-relatedEncodes a fatty alcohol oxidase.O.I.C.G.H.G.
30.799.7343.4At2g23590816891MES8 (METHYL ESTERASE 8)Encodes a protein shown to have carboxylesterase activity in vitro. It has similarity to the SABP2 methyl salicylate esterase from tobacco. This protein does not act on methyl IAA, methyl JA, MeSA, MeGA4, or MEGA9 in vitro.O.I.C.G.H.G.
30.799.765.0At4g24700828572unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
30.699.7107.0At3g59780825147-F:molecular_function unknown;P:biological_process unknown;C:nucleus, chloroplast;OBMFPVO.I.C.G.H.G.
30.599.7218.6At1g44000841000unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PBOO.I.C.G.H.G.
30.099.779.8At2g32530817814ATCSLB03encodes a gene similar to cellulose synthaseO.I.C.G.H.G.
29.599.768.7At2g42190818819unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBAO.I.C.G.H.G.
28.799.722.2At1g18485838429pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBO.I.C.G.H.G.
27.399.785.7At5g38510833839rhomboid family proteinF:molecular_function unknown;P:biological_process unknown;C:integral to membrane;BOMPFAO.I.C.G.H.G.
26.699.729.0At5g06440830532unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POFMBO.I.C.G.H.G.
26.199.7204.7At2g16500816149ADC1 (ARGININE DECARBOXYLASE 1)encodes a arginine decarboxylase (ADC), a rate-limiting enzyme that catalyzes the first step of polyamine (PA) biosynthesis via ADC pathway in Arabidopsis thaliana. Arabidopsis genome has two ADC paralogs, ADC1 and ADC2. Double mutant analysis showed that ADC genes are essential for the production of PA, and are required for normal seed development. Promoter region of ADC1 contains 742-bp AT-rich transposable element, called AtATE, that belongs to the MITE families of repetitive elements.O.I.C.G.H.G.
26.199.784.8At1g26560839196BGLU40 (BETA GLUCOSIDASE 40)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:apoplast, chloroplast;BOPMFAO.I.C.G.H.G.
25.799.726.7At1g71340843475glycerophosphoryl diester phosphodiesterase family proteinF:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:cellular_component unknown;BOAMPFVO.I.C.G.H.G.
25.399.654.8At5g54630835552zinc finger protein-relatedF:transcription factor activity;P:regulation of transcription;C:intracellular;PFMOO.I.C.G.H.G.
24.399.630.5At5g20220832144zinc knuckle (CCHC-type) family proteinF:unfolded protein binding, heat shock protein binding, zinc ion binding, nucleic acid binding;P:protein folding;C:unknown;VMFOPBO.I.C.G.H.G.
24.199.686.5At1g51110841534plastid-lipid associated protein PAP / fibrillin family proteinF:structural molecule activity;P:tryptophan biosynthetic process;C:chloroplast thylakoid membrane, chloroplast, membrane;PBOO.I.C.G.H.G.
24.099.672.1At5g52570835334BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2)Converts β-carotene to zeaxanthin via cryptoxanthin.O.I.C.G.H.G.
23.399.695.3At1g14280837989PKS2 (PHYTOCHROME KINASE SUBSTRATE 2)Encodes phytochrome kinase substrate 2. PKS proteins are critical for hypocotyl phototropism.O.I.C.G.H.G.
23.199.680.2At3g13040820490myb family transcription factorF:transcription factor activity;P:regulation of transcription;C:unknown;PMOFBAO.I.C.G.H.G.
23.199.658.9At1g75100843847JAC1 (J-DOMAIN PROTEIN REQUIRED FOR CHLOROPLAST ACCUMULATION RESPONSE 1)Contains a J-domain at the C-terminus which is similar to the J-domain of auxilin, a clathrin-uncoating factor in cow, yeast and worm. Arabidopsis contains 6 other proteins similar to auxilin. Expressed in leaves and stems, but not in roots. Localized in the cytoplasm. Required for the chloroplast accumulation response, but not for the avoidance response. No molecular function known.O.I.C.G.H.G.
22.699.6129.7At1g51805841607leucine-rich repeat protein kinase, putativeF:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
21.899.632.2At1g29440839820-F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO.I.C.G.H.G.
21.399.620.2At5g40380834036protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
21.199.649.0At3g53920824559SIGC (RNA POLYMERASE SIGMA-SUBUNIT C)Encodes a sigma-like transcription factor, Sigma 3 (SIG3 or SIGC). As a subunit of chloroplast RNA polymerase, SIG3 confers the ability to recognize promoter sequences on the core enzyme. SIG3 transcribes specifically the psbN gene in plastids.O.I.C.G.H.G.
20.999.6108.4At4g36540829806BEE2 (BR Enhanced Expression 2)F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFMOO.I.C.G.H.G.
20.699.6126.5At3g24190822005ABC1 family proteinF:protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;OBMPFAVO.I.C.G.H.G.
20.599.6154.5At1g58807842225disease resistance protein (CC-NBS-LRR class), putative / PRM1 homolog, putativeF:protein binding, ATP binding;P:defense response, apoptosis;C:cellular_component unknown;PMBOFAO.I.C.G.H.G.
20.499.6137.0At5g06980830589unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMO.I.C.G.H.G.
20.499.674.7At1g62250842522unknown proteinF:unknown;P:unknown;C:chloroplast;PO.I.C.G.H.G.
20.499.617.2At2g46250819233myosin heavy chain-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVO.I.C.G.H.G.
20.099.668.3At1g62960842598ACS10 (ACC SYNTHASE 10)Encodes an aminotransferase with broad specificity for aspartate and aromatic amino aids such as tyrosine and phenylalanine. It does not act on branched chain amino acids and does not have ACC synthase activity.O.I.C.G.H.G.
19.899.6684.5At3g27690822391LHCB2.3Encodes Lhcb2.4. Belongs to the Lhc super-gene family encodes the light-harvesting chlorophyll a/b-binding (LHC) proteins that constitute the antenna system of the photosynthetic apparatus.O.I.C.G.H.G.
19.699.636.4At3g50560824220short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.
19.699.619.9At1g55930842044CBS domain-containing protein / transporter associated domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOMFPAO.I.C.G.H.G.
19.399.610.5At3g03840821121auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.
19.199.695.6At3g55630824729ATDFD (A. THALIANA DHFS-FPGS HOMOLOG D)F:tetrahydrofolylpolyglutamate synthase activity;P:one-carbon compound metabolic process;C:cytosol;BOFMPAO.I.C.G.H.G.
19.099.553.8At1g60590842353polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:unknown;FPBMOVAO.I.C.G.H.G.
18.699.547.2At1g13350837895protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:nucleus, cytoplasm;MOFPBVAO.I.C.G.H.G.
18.599.5232.9At1g55480841995binding / protein bindingF:protein binding, binding;P:unknown;C:chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast envelope;PBOMFO.I.C.G.H.G.
18.599.514.5At1g28010839694PGP14 (P-GLYCOPROTEIN 14)F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:integral to membrane;BOMAFPVO.I.C.G.H.G.
18.499.523.4At1g65070842815DNA mismatch repair MutS family proteinF:damaged DNA binding, mismatched DNA binding, ATP binding;P:mismatch repair, maintenance of fidelity during DNA-dependent DNA replication;C:nucleus;BOMFPAVO.I.C.G.H.G.
18.199.5310.9At4g26850828792VTC2 (vitamin c defective 2)Encodes a novel protein involved in ascorbate biosynthesis, which was shown to catalyze the transfer of GMP from GDP-galactose to a variety of hexose-1-phosphate acceptors. Recessive mutation has a reduced amount of vitamin C, lower level of non-photochemical quenching, and reduced rate of conversion of violaxanthin to zeaxanthin in high light.O.I.C.G.H.G.
18.199.551.9At1g29430839819auxin-responsive family proteinF:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO.I.C.G.H.G.
17.799.523.1At2g29300817479tropinone reductase, putative / tropine dehydrogenase, putativeF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAVO.I.C.G.H.G.
17.699.575.3At1g15730838142PRLI-interacting factor L, putativeF:unknown;P:unknown;C:unknown;OBMFPAVO.I.C.G.H.G.
17.599.559.9At3g17040820961HCF107 (HIGH CHLOROPHYLL FLUORESCENT 107)It is a RNA tetratricopeptide repeat-containing protein required for normal processing of transcripts from the polycistronic chloroplast psbB-psbT-psbH-petB-petD operon coding for proteins of the photosystem II and cytochrome b6/f complexes. Localizes to the chloroplast membrane. Involved in regulating plastidial gene expression and biogenesis.O.I.C.G.H.G.
17.299.5698.3At5g13630831207GUN5 (GENOMES UNCOUPLED 5)Encodes magnesium chelatase involved in plastid-to-nucleus signal transduction.O.I.C.G.H.G.
17.199.5112.9At4g10060826597catalytic/ glucosylceramidaseF:catalytic activity, glucosylceramidase activity;P:glucosylceramide catabolic process, sphingolipid metabolic process;C:vacuole;BMPOAO.I.C.G.H.G.
17.199.516.8At1g203903766766transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
16.899.5239.5At5g48490834905protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
16.899.570.0At4g20170827763unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PMBOFO.I.C.G.H.G.
16.899.531.0At3g03770821164leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
16.699.562.8At3g01550821114PPT2 (PHOSPHOENOLPYRUVATE (PEP)/PHOSPHATE TRANSLOCATOR 2)F:antiporter activity, triose-phosphate transmembrane transporter activity;P:triose phosphate transport, transport;C:integral to membrane, chloroplast, membrane;PMFOBAO.I.C.G.H.G.
16.599.557.7At5g04810830360pentatricopeptide (PPR) repeat-containing proteinF:nucleotide binding, nucleic acid binding;P:unknown;C:chloroplast;PMOFBVAO.I.C.G.H.G.
16.299.575.6At3g27050822323unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
16.099.568.4At5g17670831633hydrolase, acting on ester bondsF:hydrolase activity, acting on ester bonds;P:intracellular protein transport, GPI anchor metabolic process;C:chloroplast, chloroplast envelope;BOPO.I.C.G.H.G.
16.099.558.4At2g24540816990AFR (ATTENUATED FAR-RED RESPONSE)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFVAO.I.C.G.H.G.
16.099.511.3At5g62100836330ATBAG2 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 2)A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development.O.I.C.G.H.G.
15.899.516.0At1g66230842938MYB20 (myb domain protein 20)Encodes a putative transcription factor (MYB20).O.I.C.G.H.G.
15.799.594.5At2g46830819296CCA1 (CIRCADIAN CLOCK ASSOCIATED 1)Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis.O.I.C.G.H.G.
15.699.544.8At5g13730831218SIG4 (SIGMA FACTOR 4)Encodes sigma 4 factor, involved in regulating the activity of the plastid-encoded RNA polymerase PEP. Regulates the overall quantity of NDH complexes and thus influences NDH activity.O.I.C.G.H.G.
15.399.4112.6At5g67370836872unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;OBPO.I.C.G.H.G.
15.199.438.2At3g48720824033transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFOO.I.C.G.H.G.
14.899.474.2At5g25630832639pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;POMFBAO.I.C.G.H.G.
14.899.414.9At5g17890831657DAR4 (DA1-RELATED PROTEIN 4)F:protein binding, zinc ion binding, ATP binding;P:defense response, apoptosis;C:unknown;PMOFBVAO.I.C.G.H.G.
14.599.463.6At1g73170843649ATP binding / ATP-dependent peptidase/ nucleoside-triphosphatase/ nucleotide binding / serine-type endopeptidaseF:nucleoside-triphosphatase activity, ATP-dependent peptidase activity, nucleotide binding, serine-type endopeptidase activity, ATP binding;P:proteolysis;C:chloroplast;BOPMAFO.I.C.G.H.G.
14.499.4127.3At5g48790834937unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBOO.I.C.G.H.G.
14.499.441.4At1g70610843398ATTAP1member of TAP subfamilyO.I.C.G.H.G.
14.299.4125.2At5g45950834635GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
14.199.4127.0At5g28500832943unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;BPOO.I.C.G.H.G.
14.199.467.3At4g34240829573ALDH3I1 (ALDEHYDE DEHYDROGENASE 3|1)Aldehyde dehydrogenase induced by ABA and dehydrationO.I.C.G.H.G.
14.199.426.6At1g18810838463phytochrome kinase substrate-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBVO.I.C.G.H.G.
14.099.456.2At5g48220834875indole-3-glycerol phosphate synthase, putativeF:indole-3-glycerol-phosphate synthase activity, catalytic activity;P:metabolic process, tryptophan metabolic process;C:chloroplast, chloroplast stroma;BOAFPO.I.C.G.H.G.
13.999.450.7At2g46450819253ATCNGC12Member of Cyclic nucleotide gated channel family.Positive regulator of resistance against avirulent fungal pathogen.Suppresses the phenotype conferred by cpr22 in a dosage-dependent manner.O.I.C.G.H.G.
13.899.430.6At4g19500827691ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / transmembrane receptorF:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;POBMFAVO.I.C.G.H.G.
13.699.456.7At5g01015831731unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
13.699.443.5At2g28550817403RAP2.7 (RELATED TO AP2.7)F:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent, vegetative to reproductive phase transition;C:nucleus;POBVO.I.C.G.H.G.
13.599.433.0At3g19480821482D-3-phosphoglycerate dehydrogenase, putative / 3-PGDH, putativeF:in 7 functions;P:L-serine biosynthetic process, metabolic process;C:mitochondrion, chloroplast;BOFMPAVO.I.C.G.H.G.
13.399.427.6At3g09920820151PIP5K9 (PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE)F:1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphatidylinositol phosphate kinase activity, ATP binding;P:amino acid metabolic process, carbohydrate metabolic process;C:cytosol, nucleus, membrane;OMBPFO.I.C.G.H.G.
13.299.458.2At1g17050838275SPS2 (Solanesyl diphosphate synthase 2)Encodes a protein with solanesyl diphosphate synthase activity.O.I.C.G.H.G.
13.299.449.7At1g71720843502S1 RNA-binding domain-containing proteinF:RNA binding;P:unknown;C:chloroplast;BOPMAFO.I.C.G.H.G.
13.199.444.2At2g33250817887unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.



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