Microarray experiments to specifically-expressed genes

Assay name E-ATMX-33-raw-cel-1562596152
GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
154.299.936.6At5g41320834134unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVAO.I.C.G.H.G.
42.499.883.5At2g28210817367ATACA2 (ALPHA CARBONIC ANHYDRASE 2)F:carbonate dehydratase activity, zinc ion binding;P:response to carbon dioxide, one-carbon compound metabolic process;C:cellular_component unknown;MBPOFVO.I.C.G.H.G.
40.299.888.0At2g04032814931ZIP7 (ZINC TRANSPORTER 7 PRECURSOR)F:cation transmembrane transporter activity, zinc ion transmembrane transporter activity, metal ion transmembrane transporter activity;P:cation transport, zinc ion transport, metal ion transport;C:endomembrane system, integral to membrane, membrane;FMPOBO.I.C.G.H.G.
32.599.734.1At5g40330834031MYB23 (MYB DOMAIN PROTEIN 23)Encodes a MYB gene that, when overexpressed ectopically, can induce ectopic trichome formation. It is a member of subgroup 15, together with WER and GL1. Members of this subgroup share a conserved motif of 19 amino acids in the putative transcription activation domain at the C-terminal end. The gene is expressed in leaves, stems, flowers, seeds and roots and quite strongly in trichomes. There is partial functional redundancy between ATMYB23 and GL1. The two proteins are functionally equivalent with respect to the regulation of trichome initiation but not with respect to trichome branching - which is controlled by MYB23 and not GL1.O.I.C.G.H.G.
30.599.757.1At1g13650837926-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVAO.I.C.G.H.G.
25.499.63.2At1g373403767070transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
24.699.681.0At5g53870835468plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:plasma membrane, anchored to membrane;MFOBPVAO.I.C.G.H.G.
24.099.630.2At5g07700830663MYB76 (myb domain protein 76)Encodes a putative transcription factor (MYB76).O.I.C.G.H.G.
23.199.628.8At3g18170821344transferase, transferring glycosyl groupsF:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;PMBOFO.I.C.G.H.G.
22.899.61768.5At2g05070815055LHCB2.2Encodes Lhcb2.2. Belongs to the Lhc super-gene family encodes the light-harvesting chlorophyll a/b-binding (LHC) proteins that constitute the antenna system of the photosynthetic apparatus.O.I.C.G.H.G.
20.799.685.1At1g21570838758zinc finger (CCCH-type) family proteinF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:unknown;MFPOO.I.C.G.H.G.
19.999.64.3At2g22710816801transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
19.599.647.3At2g30150817567UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVOFO.I.C.G.H.G. element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
18.699.5662.9At3g27690822391LHCB2.3Encodes Lhcb2.4. Belongs to the Lhc super-gene family encodes the light-harvesting chlorophyll a/b-binding (LHC) proteins that constitute the antenna system of the photosynthetic apparatus.O.I.C.G.H.G.
15.999.53.8At3g44080823526F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
15.899.5864.3At2g30570817606PSBW (PHOTOSYSTEM II REACTION CENTER W)Encodes a protein similar to photosystem II reaction center subunit W.O.I.C.G.H.G.
15.299.41109.5At4g05320825880UBQ10 (POLYUBIQUITIN 10)One of five polyubiquitin genes in A. thaliana. These genes encode the highly conserved 76-amino acid protein ubiquitin that is covalently attached to substrate proteins targeting most for degradation. Polyubiquitin genes are characterized by the presence of tandem repeats of the 228 bp that encode a ubiquitin monomer. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid.O.I.C.G.H.G.
14.399.434.5At5g56850835787unknown proteinF:unknown;P:unknown;C:unknown;OMBFPAVO.I.C.G.H.G.
13.999.41.6At2g151903768611transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
13.399.454.8At2g33050817867AtRLP26 (Receptor Like Protein 26)F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAVO.I.C.G.H.G.
12.899.318.6At5g46240834666KAT1 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 1)Encodes a potassium channel protein (KAT1). ABA triggers KAT1 endocytosis both in epidermal cells as well as guard cells. Upon removal of ABA, KAT1 is recycled back to the plasma membrane. KAT1 is localized within 0.50.6 μm diameter microdomains at the plasma membrane surface.O.I.C.G.H.G.
12.399.340.3At1g16610838230SR45SR spliceosome protein, interacts with SR33 and the U1-70K protein of the U1 snRNP.O.I.C.G.H.G.
12.199.31266.7At3g47470823901LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4)Encodes a chlorophyll a/b-binding protein that is more similar to the PSI Cab proteins than the PSII cab proteins. The predicted protein is about 20 amino acids shorter than most known Cab proteins.O.I.C.G.H.G.
12.099.314.8At3g13540820556ATMYB5 (MYB DOMAIN PROTEIN 5)Encodes a member of the MYB family of transcriptional regulators. MYB5 act as a negative regulator of trichome branching and play a role in the correct formation of the seed coat and possibly the formation the underlying endosperm layers. Loss of function mutations have defects in seed coat mucilage and columella cells as well as trichome defects (smaller and reduced number of branches).O.I.C.G.H.G.
11.099.2741.0At3g62030825376peptidyl-prolyl cis-trans isomerase, chloroplast / cyclophilin / rotamase / cyclosporin A-binding protein (ROC4)nuclear-encoded chloroplast stromal cyclophilin CYP20-3 (also known as ROC4). Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.O.I.C.G.H.G.
10.999.2189.1At1g03630839009POR C (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE)Encodes for a protein with protochlorophyllide oxidoreductase activity. The enzyme is NADPH- and light-dependent.O.I.C.G.H.G.
10.799.22.4At3g42400823236transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
10.699.21262.3At3g61470825320LHCA2Encodes a component of the light harvesting antenna complex of photosystem I.O.I.C.G.H.G.
10.699.2394.7At1g53210841755sodium/calcium exchanger family protein / calcium-binding EF hand family proteinF:calcium ion binding;P:unknown;C:vacuolar membrane, plasma membrane, vacuole, membrane, plant-type vacuole;PFBOMAO.I.C.G.H.G. activity;P:unknown;C:cellular_component unknown;BOMPFO.I.C.G.H.G. kinase, putativeF:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOBFVAO.I.C.G.H.G.
9.999.15.6At1g66310842948F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
9.799.11535.0At1g67090843029RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)F:ribulose-bisphosphate carboxylase activity, copper ion binding;P:response to blue light, response to cold, carbon utilization by fixation of carbon dioxide, response to red light, response to far red light;C:in 10 components;POBO.I.C.G.H.G.
9.799.17.0At3g26930822309-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOBO.I.C.G.H.G.
9.699.16.3At3g25280822122proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:membrane;PBMFOO.I.C.G.H.G.
9.499.1145.8At2g04780815021FLA7 (FASCICLIN-LIKE ARABINOOGALACTAN 7)fasciclin-like arabinogalactan-protein 7 (Fla7)O.I.C.G.H.G.
8.699.0221.5At4g09010826480APX4 (ASCORBATE PEROXIDASE 4)Encodes a microsomal ascorbate peroxidase APX4. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms.O.I.C.G.H.G.
8.699.075.9At5g52060835281ATBAG1 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 1)A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development.O.I.C.G.H.G.

Back to the CoP portal site

Back to the KAGIANA project homepage