CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID -

Assay name E-ATMX-33-raw-cel-1562596152

GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
154.2 99.9 36.6 At5g41320 834134 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA O.I. C.G. H.G.
42.4 99.8 83.5 At2g28210 817367 ATACA2 (ALPHA CARBONIC ANHYDRASE 2) F:carbonate dehydratase activity, zinc ion binding;P:response to carbon dioxide, one-carbon compound metabolic process;C:cellular_component unknown;MBPOFV O.I. C.G. H.G.
40.2 99.8 88.0 At2g04032 814931 ZIP7 (ZINC TRANSPORTER 7 PRECURSOR) F:cation transmembrane transporter activity, zinc ion transmembrane transporter activity, metal ion transmembrane transporter activity;P:cation transport, zinc ion transport, metal ion transport;C:endomembrane system, integral to membrane, membrane;FMPOB O.I. C.G. H.G.
32.5 99.7 34.1 At5g40330 834031 MYB23 (MYB DOMAIN PROTEIN 23) Encodes a MYB gene that, when overexpressed ectopically, can induce ectopic trichome formation. It is a member of subgroup 15, together with WER and GL1. Members of this subgroup share a conserved motif of 19 amino acids in the putative transcription activation domain at the C-terminal end. The gene is expressed in leaves, stems, flowers, seeds and roots and quite strongly in trichomes. There is partial functional redundancy between ATMYB23 and GL1. The two proteins are functionally equivalent with respect to the regulation of trichome initiation but not with respect to trichome branching - which is controlled by MYB23 and not GL1. O.I. C.G. H.G.
30.5 99.7 57.1 At1g13650 837926 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA O.I. C.G. H.G.
25.4 99.6 3.2 At1g37340 3767070 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
24.6 99.6 81.0 At5g53870 835468 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:plasma membrane, anchored to membrane;MFOBPVA O.I. C.G. H.G.
24.0 99.6 30.2 At5g07700 830663 MYB76 (myb domain protein 76) Encodes a putative transcription factor (MYB76). O.I. C.G. H.G.
23.1 99.6 28.8 At3g18170 821344 transferase, transferring glycosyl groups F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;PMBOF O.I. C.G. H.G.
22.8 99.6 1768.5 At2g05070 815055 LHCB2.2 Encodes Lhcb2.2. Belongs to the Lhc super-gene family encodes the light-harvesting chlorophyll a/b-binding (LHC) proteins that constitute the antenna system of the photosynthetic apparatus. O.I. C.G. H.G.
20.7 99.6 85.1 At1g21570 838758 zinc finger (CCCH-type) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:unknown;MFPO O.I. C.G. H.G.
19.9 99.6 4.3 At2g22710 816801 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
19.5 99.6 47.3 At2g30150 817567 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVOF O.I. C.G. H.G.
19.2 99.6 1.8 At4g03990 825711 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
18.6 99.5 662.9 At3g27690 822391 LHCB2.3 Encodes Lhcb2.4. Belongs to the Lhc super-gene family encodes the light-harvesting chlorophyll a/b-binding (LHC) proteins that constitute the antenna system of the photosynthetic apparatus. O.I. C.G. H.G.
15.9 99.5 3.8 At3g44080 823526 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
15.8 99.5 864.3 At2g30570 817606 PSBW (PHOTOSYSTEM II REACTION CENTER W) Encodes a protein similar to photosystem II reaction center subunit W. O.I. C.G. H.G.
15.2 99.4 1109.5 At4g05320 825880 UBQ10 (POLYUBIQUITIN 10) One of five polyubiquitin genes in A. thaliana. These genes encode the highly conserved 76-amino acid protein ubiquitin that is covalently attached to substrate proteins targeting most for degradation. Polyubiquitin genes are characterized by the presence of tandem repeats of the 228 bp that encode a ubiquitin monomer. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid. O.I. C.G. H.G.
14.3 99.4 34.5 At5g56850 835787 unknown protein F:unknown;P:unknown;C:unknown;OMBFPAV O.I. C.G. H.G.
13.9 99.4 1.6 At2g15190 3768611 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
13.3 99.4 54.8 At2g33050 817867 AtRLP26 (Receptor Like Protein 26) F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV O.I. C.G. H.G.
12.8 99.3 18.6 At5g46240 834666 KAT1 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 1) Encodes a potassium channel protein (KAT1). ABA triggers KAT1 endocytosis both in epidermal cells as well as guard cells. Upon removal of ABA, KAT1 is recycled back to the plasma membrane. KAT1 is localized within 0.5�0.6 μm diameter microdomains at the plasma membrane surface. O.I. C.G. H.G.
12.3 99.3 40.3 At1g16610 838230 SR45 SR spliceosome protein, interacts with SR33 and the U1-70K protein of the U1 snRNP. O.I. C.G. H.G.
12.1 99.3 1266.7 At3g47470 823901 LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4) Encodes a chlorophyll a/b-binding protein that is more similar to the PSI Cab proteins than the PSII cab proteins. The predicted protein is about 20 amino acids shorter than most known Cab proteins. O.I. C.G. H.G.
12.0 99.3 14.8 At3g13540 820556 ATMYB5 (MYB DOMAIN PROTEIN 5) Encodes a member of the MYB family of transcriptional regulators. MYB5 act as a negative regulator of trichome branching and play a role in the correct formation of the seed coat and possibly the formation the underlying endosperm layers. Loss of function mutations have defects in seed coat mucilage and columella cells as well as trichome defects (smaller and reduced number of branches). O.I. C.G. H.G.
11.0 99.2 741.0 At3g62030 825376 peptidyl-prolyl cis-trans isomerase, chloroplast / cyclophilin / rotamase / cyclosporin A-binding protein (ROC4) nuclear-encoded chloroplast stromal cyclophilin CYP20-3 (also known as ROC4). Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. O.I. C.G. H.G.
10.9 99.2 189.1 At1g03630 839009 POR C (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE) Encodes for a protein with protochlorophyllide oxidoreductase activity. The enzyme is NADPH- and light-dependent. O.I. C.G. H.G.
10.7 99.2 2.4 At3g42400 823236 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
10.6 99.2 1262.3 At3g61470 825320 LHCA2 Encodes a component of the light harvesting antenna complex of photosystem I. O.I. C.G. H.G.
10.6 99.2 394.7 At1g53210 841755 sodium/calcium exchanger family protein / calcium-binding EF hand family protein F:calcium ion binding;P:unknown;C:vacuolar membrane, plasma membrane, vacuole, membrane, plant-type vacuole;PFBOMA O.I. C.G. H.G.
10.2 99.2 23.4 At5g01780 831672 oxidoreductase F:oxidoreductase activity;P:unknown;C:cellular_component unknown;BOMPF O.I. C.G. H.G.
10.2 99.2 5.3 At3g50730 824237 protein kinase, putative F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOBFVA O.I. C.G. H.G.
9.9 99.1 5.6 At1g66310 842948 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
9.7 99.1 1535.0 At1g67090 843029 RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A) F:ribulose-bisphosphate carboxylase activity, copper ion binding;P:response to blue light, response to cold, carbon utilization by fixation of carbon dioxide, response to red light, response to far red light;C:in 10 components;POB O.I. C.G. H.G.
9.7 99.1 7.0 At3g26930 822309 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOB O.I. C.G. H.G.
9.6 99.1 6.3 At3g25280 822122 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;PBMFO O.I. C.G. H.G.
9.4 99.1 145.8 At2g04780 815021 FLA7 (FASCICLIN-LIKE ARABINOOGALACTAN 7) fasciclin-like arabinogalactan-protein 7 (Fla7) O.I. C.G. H.G.
8.6 99.0 221.5 At4g09010 826480 APX4 (ASCORBATE PEROXIDASE 4) Encodes a microsomal ascorbate peroxidase APX4. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. O.I. C.G. H.G.
8.6 99.0 75.9 At5g52060 835281 ATBAG1 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 1) A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development. O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
154.2	99.9	36.6	At5g41320	834134	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA	O.I.	C.G.	H.G.
42.4	99.8	83.5	At2g28210	817367	ATACA2 (ALPHA CARBONIC ANHYDRASE 2)	F:carbonate dehydratase activity, zinc ion binding;P:response to carbon dioxide, one-carbon compound metabolic process;C:cellular_component unknown;MBPOFV	O.I.	C.G.	H.G.
40.2	99.8	88.0	At2g04032	814931	ZIP7 (ZINC TRANSPORTER 7 PRECURSOR)	F:cation transmembrane transporter activity, zinc ion transmembrane transporter activity, metal ion transmembrane transporter activity;P:cation transport, zinc ion transport, metal ion transport;C:endomembrane system, integral to membrane, membrane;FMPOB	O.I.	C.G.	H.G.
32.5	99.7	34.1	At5g40330	834031	MYB23 (MYB DOMAIN PROTEIN 23)	Encodes a MYB gene that, when overexpressed ectopically, can induce ectopic trichome formation. It is a member of subgroup 15, together with WER and GL1. Members of this subgroup share a conserved motif of 19 amino acids in the putative transcription activation domain at the C-terminal end. The gene is expressed in leaves, stems, flowers, seeds and roots and quite strongly in trichomes. There is partial functional redundancy between ATMYB23 and GL1. The two proteins are functionally equivalent with respect to the regulation of trichome initiation but not with respect to trichome branching - which is controlled by MYB23 and not GL1.	O.I.	C.G.	H.G.
30.5	99.7	57.1	At1g13650	837926	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA	O.I.	C.G.	H.G.
25.4	99.6	3.2	At1g37340	3767070	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
24.6	99.6	81.0	At5g53870	835468	plastocyanin-like domain-containing protein	F:electron carrier activity, copper ion binding;P:unknown;C:plasma membrane, anchored to membrane;MFOBPVA	O.I.	C.G.	H.G.
24.0	99.6	30.2	At5g07700	830663	MYB76 (myb domain protein 76)	Encodes a putative transcription factor (MYB76).	O.I.	C.G.	H.G.
23.1	99.6	28.8	At3g18170	821344	transferase, transferring glycosyl groups	F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;PMBOF	O.I.	C.G.	H.G.
22.8	99.6	1768.5	At2g05070	815055	LHCB2.2	Encodes Lhcb2.2. Belongs to the Lhc super-gene family encodes the light-harvesting chlorophyll a/b-binding (LHC) proteins that constitute the antenna system of the photosynthetic apparatus.	O.I.	C.G.	H.G.
20.7	99.6	85.1	At1g21570	838758	zinc finger (CCCH-type) family protein	F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:unknown;MFPO	O.I.	C.G.	H.G.
19.9	99.6	4.3	At2g22710	816801	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
19.5	99.6	47.3	At2g30150	817567	UDP-glucoronosyl/UDP-glucosyl transferase family protein	F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVOF	O.I.	C.G.	H.G.
19.2	99.6	1.8	At4g03990	825711	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
18.6	99.5	662.9	At3g27690	822391	LHCB2.3	Encodes Lhcb2.4. Belongs to the Lhc super-gene family encodes the light-harvesting chlorophyll a/b-binding (LHC) proteins that constitute the antenna system of the photosynthetic apparatus.	O.I.	C.G.	H.G.
15.9	99.5	3.8	At3g44080	823526	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
15.8	99.5	864.3	At2g30570	817606	PSBW (PHOTOSYSTEM II REACTION CENTER W)	Encodes a protein similar to photosystem II reaction center subunit W.	O.I.	C.G.	H.G.
15.2	99.4	1109.5	At4g05320	825880	UBQ10 (POLYUBIQUITIN 10)	One of five polyubiquitin genes in A. thaliana. These genes encode the highly conserved 76-amino acid protein ubiquitin that is covalently attached to substrate proteins targeting most for degradation. Polyubiquitin genes are characterized by the presence of tandem repeats of the 228 bp that encode a ubiquitin monomer. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid.	O.I.	C.G.	H.G.
14.3	99.4	34.5	At5g56850	835787	unknown protein	F:unknown;P:unknown;C:unknown;OMBFPAV	O.I.	C.G.	H.G.
13.9	99.4	1.6	At2g15190	3768611	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
13.3	99.4	54.8	At2g33050	817867	AtRLP26 (Receptor Like Protein 26)	F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV	O.I.	C.G.	H.G.
12.8	99.3	18.6	At5g46240	834666	KAT1 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 1)	Encodes a potassium channel protein (KAT1). ABA triggers KAT1 endocytosis both in epidermal cells as well as guard cells. Upon removal of ABA, KAT1 is recycled back to the plasma membrane. KAT1 is localized within 0.5�0.6 μm diameter microdomains at the plasma membrane surface.	O.I.	C.G.	H.G.
12.3	99.3	40.3	At1g16610	838230	SR45	SR spliceosome protein, interacts with SR33 and the U1-70K protein of the U1 snRNP.	O.I.	C.G.	H.G.
12.1	99.3	1266.7	At3g47470	823901	LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4)	Encodes a chlorophyll a/b-binding protein that is more similar to the PSI Cab proteins than the PSII cab proteins. The predicted protein is about 20 amino acids shorter than most known Cab proteins.	O.I.	C.G.	H.G.
12.0	99.3	14.8	At3g13540	820556	ATMYB5 (MYB DOMAIN PROTEIN 5)	Encodes a member of the MYB family of transcriptional regulators. MYB5 act as a negative regulator of trichome branching and play a role in the correct formation of the seed coat and possibly the formation the underlying endosperm layers. Loss of function mutations have defects in seed coat mucilage and columella cells as well as trichome defects (smaller and reduced number of branches).	O.I.	C.G.	H.G.
11.0	99.2	741.0	At3g62030	825376	peptidyl-prolyl cis-trans isomerase, chloroplast / cyclophilin / rotamase / cyclosporin A-binding protein (ROC4)	nuclear-encoded chloroplast stromal cyclophilin CYP20-3 (also known as ROC4). Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.	O.I.	C.G.	H.G.
10.9	99.2	189.1	At1g03630	839009	POR C (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE)	Encodes for a protein with protochlorophyllide oxidoreductase activity. The enzyme is NADPH- and light-dependent.	O.I.	C.G.	H.G.
10.7	99.2	2.4	At3g42400	823236	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
10.6	99.2	1262.3	At3g61470	825320	LHCA2	Encodes a component of the light harvesting antenna complex of photosystem I.	O.I.	C.G.	H.G.
10.6	99.2	394.7	At1g53210	841755	sodium/calcium exchanger family protein / calcium-binding EF hand family protein	F:calcium ion binding;P:unknown;C:vacuolar membrane, plasma membrane, vacuole, membrane, plant-type vacuole;PFBOMA	O.I.	C.G.	H.G.
10.2	99.2	23.4	At5g01780	831672	oxidoreductase	F:oxidoreductase activity;P:unknown;C:cellular_component unknown;BOMPF	O.I.	C.G.	H.G.
10.2	99.2	5.3	At3g50730	824237	protein kinase, putative	F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOBFVA	O.I.	C.G.	H.G.
9.9	99.1	5.6	At1g66310	842948	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
9.7	99.1	1535.0	At1g67090	843029	RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)	F:ribulose-bisphosphate carboxylase activity, copper ion binding;P:response to blue light, response to cold, carbon utilization by fixation of carbon dioxide, response to red light, response to far red light;C:in 10 components;POB	O.I.	C.G.	H.G.
9.7	99.1	7.0	At3g26930	822309	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOB	O.I.	C.G.	H.G.
9.6	99.1	6.3	At3g25280	822122	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:membrane;PBMFO	O.I.	C.G.	H.G.
9.4	99.1	145.8	At2g04780	815021	FLA7 (FASCICLIN-LIKE ARABINOOGALACTAN 7)	fasciclin-like arabinogalactan-protein 7 (Fla7)	O.I.	C.G.	H.G.
8.6	99.0	221.5	At4g09010	826480	APX4 (ASCORBATE PEROXIDASE 4)	Encodes a microsomal ascorbate peroxidase APX4. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms.	O.I.	C.G.	H.G.
8.6	99.0	75.9	At5g52060	835281	ATBAG1 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 1)	A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development.	O.I.	C.G.	H.G.

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GSM ID	-
Assay name	E-ATMX-33-raw-cel-1562596152
GSE experiment	-

Microarray experiments to specifically-expressed genes

GSM ID - Assay name E-ATMX-33-raw-cel-1562596152 GSE experiment -

GSM ID -

Assay name E-ATMX-33-raw-cel-1562596152

GSE experiment -