Microarray experiments to specifically-expressed genes

GSM ID -
Assay name E-ATMX-33-raw-cel-1562596103
GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
799.5100.0169.0At5g40330834031MYB23 (MYB DOMAIN PROTEIN 23)Encodes a MYB gene that, when overexpressed ectopically, can induce ectopic trichome formation. It is a member of subgroup 15, together with WER and GL1. Members of this subgroup share a conserved motif of 19 amino acids in the putative transcription activation domain at the C-terminal end. The gene is expressed in leaves, stems, flowers, seeds and roots and quite strongly in trichomes. There is partial functional redundancy between ATMYB23 and GL1. The two proteins are functionally equivalent with respect to the regulation of trichome initiation but not with respect to trichome branching - which is controlled by MYB23 and not GL1.O.I.C.G.H.G.
491.3100.0307.9At2g04032814931ZIP7 (ZINC TRANSPORTER 7 PRECURSOR)F:cation transmembrane transporter activity, zinc ion transmembrane transporter activity, metal ion transmembrane transporter activity;P:cation transport, zinc ion transport, metal ion transport;C:endomembrane system, integral to membrane, membrane;FMPOBO.I.C.G.H.G.
285.6100.027.7At1g27940839687PGP13 (P-GLYCOPROTEIN 13)F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:integral to membrane;BOMAFPVO.I.C.G.H.G.
284.4100.0246.2At2g24540816990AFR (ATTENUATED FAR-RED RESPONSE)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFVAO.I.C.G.H.G.
221.8100.049.5At1g66460842964protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
219.8100.049.4At2g36090818182F-box family proteinF:unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
218.5100.0189.5At2g28210817367ATACA2 (ALPHA CARBONIC ANHYDRASE 2)F:carbonate dehydratase activity, zinc ion binding;P:response to carbon dioxide, one-carbon compound metabolic process;C:cellular_component unknown;MBPOFVO.I.C.G.H.G.
170.6100.078.2At3g18170821344transferase, transferring glycosyl groupsF:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;PMBOFO.I.C.G.H.G.
170.2100.081.2At1g74810843820BOR5F:anion exchanger activity;P:anion transport;C:integral to membrane, membrane;MFPOBVO.I.C.G.H.G.
141.499.9194.3At5g53870835468plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:plasma membrane, anchored to membrane;MFOBPVAO.I.C.G.H.G.
102.699.9107.6At1g80170844357polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:plant-type cell wall;FPBOMAO.I.C.G.H.G.
100.199.960.8At1g11410837683S-locus protein kinase, putativeF:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
93.099.9166.7At4g35985829753senescence/dehydration-associated protein-relatedF:unknown;P:unknown;C:chloroplast;MPFOO.I.C.G.H.G.
84.699.9172.1At1g21570838758zinc finger (CCCH-type) family proteinF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:unknown;MFPOO.I.C.G.H.G.
71.399.9189.9At5g06700830559unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVAO.I.C.G.H.G.
68.499.935.3At3g13540820556ATMYB5 (MYB DOMAIN PROTEIN 5)Encodes a member of the MYB family of transcriptional regulators. MYB5 act as a negative regulator of trichome branching and play a role in the correct formation of the seed coat and possibly the formation the underlying endosperm layers. Loss of function mutations have defects in seed coat mucilage and columella cells as well as trichome defects (smaller and reduced number of branches).O.I.C.G.H.G.
65.499.844.7At3g09520820109ATEXO70H4 (exocyst subunit EXO70 family protein H4)A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.O.I.C.G.H.G.
63.299.851.1At5g41460834147fringe-related proteinF:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:unknown;MPFOO.I.C.G.H.G.
62.599.8244.4At2g33850817954unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OMFPBAVO.I.C.G.H.G.
60.399.8681.8At2g38870818471protease inhibitor, putativePredicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860.O.I.C.G.H.G.
58.199.817.1At5g15900831447unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
56.599.833.3At5g20820832205auxin-responsive protein-relatedF:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO.I.C.G.H.G.
56.599.812.2At5g35250833479transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
52.899.835.3At4g27240828832zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PFOO.I.C.G.H.G.
52.799.853.0At5g01780831672oxidoreductaseF:oxidoreductase activity;P:unknown;C:cellular_component unknown;BOMPFO.I.C.G.H.G.
52.299.842.9At2g42270818828U5 small nuclear ribonucleoprotein helicase, putativeF:in 6 functions;P:unknown;C:unknown;BOMFAPVO.I.C.G.H.G.
51.299.847.2At2g36590818232ProT3 (PROLINE TRANSPORTER 3)Encodes a proline transporter with affinity for gly betaine, proline, and GABA. Protein is expressed in leaves, flowers and siliques but to a much lesser extent in roots.O.I.C.G.H.G.
49.999.8182.8At5g52060835281ATBAG1 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 1)A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development.O.I.C.G.H.G.
49.799.8856.1At1g53210841755sodium/calcium exchanger family protein / calcium-binding EF hand family proteinF:calcium ion binding;P:unknown;C:vacuolar membrane, plasma membrane, vacuole, membrane, plant-type vacuole;PFBOMAO.I.C.G.H.G.
47.699.8171.5At1g29050839779unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;POO.I.C.G.H.G.
47.599.856.9At1g79840844323GL2 (GLABRA 2)Glabra 2, a homeodomain protein affects epidermal cell identity including trichomes, root hairs, and seed coat. It also down-regulates seed oil content. Expressed in atrichoblasts and required to suppress root hair development. Also expressed abundantly during early seed development. Directly regulated by WER.O.I.C.G.H.G.
47.299.823.8At5g39090833901transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:unknown;PFOO.I.C.G.H.G.
45.899.826.0At2g28260817372ATCNGC15member of Cyclic nucleotide gated channel familyO.I.C.G.H.G.
45.399.853.2At1g22180838823SEC14 cytosolic factor family protein / phosphoglyceride transfer family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOO.I.C.G.H.G.
44.199.815.2At4g17860827509unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;PFO.I.C.G.H.G.
41.599.85.4At3g26130822213glycosyl hydrolase family 5 protein / cellulase family proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BFPOO.I.C.G.H.G.
41.399.8147.9At2g41250818724haloacid dehalogenase-like hydrolase family proteinF:hydrolase activity, catalytic activity, phosphoglycolate phosphatase activity;P:metabolic process;C:mitochondrion;BOMAPFO.I.C.G.H.G.
40.999.838.3At5g46350834678WRKY8member of WRKY Transcription Factor; Group II-cO.I.C.G.H.G.
39.799.831.4At5g26010832670catalytic/ protein serine/threonine phosphataseF:protein serine/threonine phosphatase activity, catalytic activity;P:N-terminal protein myristoylation;C:cellular_component unknown;PMOFBVO.I.C.G.H.G.
38.999.842.3At1g64330842739myosin heavy chain-relatedF:molecular_function unknown;P:biological_process unknown;C:plasma membrane, vacuole;MOBFPAVO.I.C.G.H.G.
37.099.7219.0At5g43150834332unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.C.G.H.G.
37.099.72.7At1g32670840161unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
35.999.737.1At1g29720839850protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
35.999.713.3At1g09170837437kinesin motor protein-relatedF:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFPBO.I.C.G.H.G.
34.799.794.3At5g58670835981PLC1 (PHOSPHOLIPASE C 1)phosphatidylinositol-specific phospholipase C is induced to a significant extent under various environmental stresses, such as dehydration, salinity, and low temperature. May play a role in secondary ABA response. There are two genes called ATPLC1, one corresponding to AT4g38530 and one corresponding ot AT5g58670 (this one).O.I.C.G.H.G.
34.599.7170.5At1g22890838896unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
34.399.71666.2At4g05320825880UBQ10 (POLYUBIQUITIN 10)One of five polyubiquitin genes in A. thaliana. These genes encode the highly conserved 76-amino acid protein ubiquitin that is covalently attached to substrate proteins targeting most for degradation. Polyubiquitin genes are characterized by the presence of tandem repeats of the 228 bp that encode a ubiquitin monomer. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid.O.I.C.G.H.G.
33.899.7177.8At3g61220825294short-chain dehydrogenase/reductase (SDR) family proteinF:(-)-menthol dehydrogenase activity, oxidoreductase activity, (+)-neomenthol dehydrogenase activity;P:defense response;C:plasma membrane;BOMFPAO.I.C.G.H.G.
33.299.773.2At1g08470837368strictosidine synthase family proteinF:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endoplasmic reticulum, plasma membrane;PBMOFAO.I.C.G.H.G.
33.299.738.5At1g06100837119fatty acid desaturase family proteinF:oxidoreductase activity;P:lipid metabolic process;C:unknown;BOMFPVO.I.C.G.H.G.
32.799.762.3At3g46540823807epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-relatedF:binding;P:biological_process unknown;C:cellular_component unknown;MFPOO.I.C.G.H.G.
31.499.718.5At1g64180842722intracellular protein transport protein USO1-relatedF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOBFPVAO.I.C.G.H.G.
31.299.76.6At1g48730841295unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
30.799.7653.8At5g39570833953unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cytosol, nucleus;POO.I.C.G.H.G.
29.699.73.0At2g108403768125transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
29.399.79.7At4g01110827897-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
29.299.723.9At3g52550824421-F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPVBO.I.C.G.H.G.
29.099.747.2At1g27120839601galactosyltransferase family proteinF:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:endomembrane system, membrane;MPOBFO.I.C.G.H.G.
28.899.78.2At1g62350842533-F:molecular_function unknown;P:biological_process unknown;C:unknown;PMO.I.C.G.H.G.
28.799.7129.1At3g03640821201BGLU25 (BETA GLUCOSIDASE 25)Encodes beta-glucosidase (GLUC).O.I.C.G.H.G.
28.199.779.6At2g33050817867AtRLP26 (Receptor Like Protein 26)F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAVO.I.C.G.H.G.
27.499.715.3At3g09310820087unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPVMO.I.C.G.H.G.
27.199.741.4At5g54530835541unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
26.799.7108.2At5g20050832127protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
26.599.727.2At1g19940838583AtGH9B5 (Arabidopsis thaliana Glycosyl Hydrolase 9B5)F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOFO.I.C.G.H.G.
26.199.714.1At5g45220834558Toll-Interleukin-Resistance (TIR) domain-containing proteinF:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PO.I.C.G.H.G.
25.899.7123.0At3g02740821256aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:plasma membrane, anchored to membrane;PMFOO.I.C.G.H.G.
25.899.71.7At3g19780821515-F:unknown;P:unknown;C:endomembrane system;OMBPFO.I.C.G.H.G.
25.799.762.9At2g33570817922unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PMBOAO.I.C.G.H.G.
25.799.715.7At2g233303768382transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
25.299.64.5At4g03690825669transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
24.999.670.5At2g131603768696transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
24.699.623.9At3g22260821796OTU-like cysteine protease family proteinF:cysteine-type peptidase activity;P:biological_process unknown;C:plasma membrane;MPOFVO.I.C.G.H.G.
24.599.673.8At4g17215827433unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
24.299.610.7At3g25440822128RNA bindingF:RNA binding;P:biological_process unknown;C:chloroplast;PMOFVBAO.I.C.G.H.G.
24.099.612.0At4g01190828066ATPIPK10 (Arabidopsis phosphatidylinositol phosphate kinase 10)Type I phosphatidylinositol-4-phosphate 5-kinase, subfamily A. Preferentially phosphorylates PtdIns4P. Expressed in flowers and inflorescence stems.O.I.C.G.H.G.
23.799.624.5At4g17695827490KAN3 (KANADI 3)F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POO.I.C.G.H.G.
23.799.622.8At3g01350819616proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:membrane;PBMOFO.I.C.G.H.G.
23.799.64.4At2g24780817015unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
23.699.6231.1At2g04780815021FLA7 (FASCICLIN-LIKE ARABINOOGALACTAN 7)fasciclin-like arabinogalactan-protein 7 (Fla7)O.I.C.G.H.G.
22.999.656.0At4g28780828999GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
22.999.625.7At2g25220817060ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVAO.I.C.G.H.G.
22.899.6164.7At5g03030831703DNAJ heat shock N-terminal domain-containing proteinF:heat shock protein binding;P:protein folding;C:unknown;OMFBPVO.I.C.G.H.G.
21.799.68.3At4g19520827694disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAVO.I.C.G.H.G.
21.699.6104.9At5g17050831568UGT78D2 (UDP-GLUCOSYL TRANSFERASE 78D2)The At5g17050 encodes a anthocyanidin 3-O-glucosyltransferase which specifically glucosylates the 3-position of the flavonoid C-ring. Anthocyanidins such as cyanidin and pelargonidin as well as flavonols such as kaempferol and quercetin are accepted substrates.O.I.C.G.H.G.
21.599.612.2At4g03340827969glycosyltransferase family 14 protein / core-2/I-branching enzyme family proteinF:transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity;P:carbohydrate biosynthetic process;C:mitochondrion, membrane;MPBVOO.I.C.G.H.G.
21.499.622.5At1g12550837811oxidoreductase family proteinF:in 6 functions;P:metabolic process;C:cellular_component unknown;BOFMPAVO.I.C.G.H.G.
21.299.698.5At2g22980816829serine-type carboxypeptidaseF:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBOO.I.C.G.H.G.
21.199.624.2At1g11350837677SD1-13 (S-DOMAIN-1 13)F:protein serine/threonine kinase activity, protein kinase activity, kinase activity;P:protein amino acid autophosphorylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
21.199.64.1At1g23630--O.I.C.G.H.G.
21.099.636.2At2g41880818788GK-1 (GUANYLATE KINASE 1)Guanylate kinase. Involved in nucleotide metabolism.O.I.C.G.H.G.
20.799.6418.2At2g23810816913TET8 (TETRASPANIN8)Member of TETRASPANIN familyO.I.C.G.H.G.
20.799.628.1At5g04220830301SYTCF:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOO.I.C.G.H.G.
20.199.647.9At2g24240816958potassium channel tetramerisation domain-containing proteinF:protein binding, voltage-gated potassium channel activity;P:potassium ion transport;C:voltage-gated potassium channel complex, membrane;MPOFO.I.C.G.H.G.
20.099.615.8At1g55940842045CYP708A1member of CYP708AO.I.C.G.H.G.
19.499.635.9At4g20760827824short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAVO.I.C.G.H.G.
19.399.629.3At5g06330830521hairpin-responsive protein, putative (HIN1)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
19.399.63.4At2g13730815857transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
18.999.553.7At1g65450842857transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO.I.C.G.H.G.
18.799.567.4At3g23410821922alcohol oxidase-relatedEncodes a fatty alcohol oxidase.O.I.C.G.H.G.



Back to the CoP portal site

Back to the KAGIANA project homepage