CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID -

Assay name E-ATMX-33-raw-cel-1562596057

GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
73.5 99.9 28.5 At1g66460 842964 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
56.6 99.8 104.5 At2g04032 814931 ZIP7 (ZINC TRANSPORTER 7 PRECURSOR) F:cation transmembrane transporter activity, zinc ion transmembrane transporter activity, metal ion transmembrane transporter activity;P:cation transport, zinc ion transport, metal ion transport;C:endomembrane system, integral to membrane, membrane;FMPOB O.I. C.G. H.G.
49.6 99.8 138.9 At2g39400 818525 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:unknown;BOPMFVA O.I. C.G. H.G.
29.0 99.7 156.3 At1g22890 838896 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
26.8 99.7 42.8 At1g79840 844323 GL2 (GLABRA 2) Glabra 2, a homeodomain protein affects epidermal cell identity including trichomes, root hairs, and seed coat. It also down-regulates seed oil content. Expressed in atrichoblasts and required to suppress root hair development. Also expressed abundantly during early seed development. Directly regulated by WER. O.I. C.G. H.G.
22.5 99.6 38.3 At4g32280 829361 IAA29 (INDOLE-3-ACETIC ACID INDUCIBLE 29) Auxin inducible protein. O.I. C.G. H.G.
20.7 99.6 48.4 At1g80170 844357 polygalacturonase, putative / pectinase, putative F:polygalacturonase activity;P:carbohydrate metabolic process;C:plant-type cell wall;FPBOMA O.I. C.G. H.G.
18.2 99.5 41.9 At3g48720 824033 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
17.4 99.5 130.9 At3g04550 819611 unknown protein F:unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;BPMO O.I. C.G. H.G.
13.5 99.4 56.2 At3g59010 825070 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMO O.I. C.G. H.G.
13.1 99.4 24.3 At1g06100 837119 fatty acid desaturase family protein F:oxidoreductase activity;P:lipid metabolic process;C:unknown;BOMFPV O.I. C.G. H.G.
12.9 99.3 21.5 At5g40330 834031 MYB23 (MYB DOMAIN PROTEIN 23) Encodes a MYB gene that, when overexpressed ectopically, can induce ectopic trichome formation. It is a member of subgroup 15, together with WER and GL1. Members of this subgroup share a conserved motif of 19 amino acids in the putative transcription activation domain at the C-terminal end. The gene is expressed in leaves, stems, flowers, seeds and roots and quite strongly in trichomes. There is partial functional redundancy between ATMYB23 and GL1. The two proteins are functionally equivalent with respect to the regulation of trichome initiation but not with respect to trichome branching - which is controlled by MYB23 and not GL1. O.I. C.G. H.G.
12.7 99.3 57.4 At1g77210 844057 sugar transporter, putative F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:plasma membrane, membrane;BFMPOA O.I. C.G. H.G.
12.7 99.3 16.8 At4g16750 827379 DRE-binding transcription factor, putative encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. O.I. C.G. H.G.
11.5 99.3 1.1 At4g03810 3770158 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
11.0 99.2 171.2 At1g04430 839522 dehydration-responsive protein-related F:unknown;P:biological_process unknown;C:Golgi apparatus, plasma membrane;PBO O.I. C.G. H.G.
10.6 99.2 35.5 At5g54630 835552 zinc finger protein-related F:transcription factor activity;P:regulation of transcription;C:intracellular;PFMO O.I. C.G. H.G.
10.6 99.2 20.2 At1g74810 843820 BOR5 F:anion exchanger activity;P:anion transport;C:integral to membrane, membrane;MFPOBV O.I. C.G. H.G.
9.7 99.1 312.6 At5g24490 832520 30S ribosomal protein, putative F:structural constituent of ribosome, binding;P:translation, primary metabolic process;C:ribosome, chloroplast;BOPM O.I. C.G. H.G.
9.6 99.1 1.7 At4g07620 3770532 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
9.1 99.1 673.2 At3g62030 825376 peptidyl-prolyl cis-trans isomerase, chloroplast / cyclophilin / rotamase / cyclosporin A-binding protein (ROC4) nuclear-encoded chloroplast stromal cyclophilin CYP20-3 (also known as ROC4). Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. O.I. C.G. H.G.
9.0 99.1 28.4 At3g19660 821503 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
8.7 99.0 9.4 At3g61840 825357 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
73.5	99.9	28.5	At1g66460	842964	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
56.6	99.8	104.5	At2g04032	814931	ZIP7 (ZINC TRANSPORTER 7 PRECURSOR)	F:cation transmembrane transporter activity, zinc ion transmembrane transporter activity, metal ion transmembrane transporter activity;P:cation transport, zinc ion transport, metal ion transport;C:endomembrane system, integral to membrane, membrane;FMPOB	O.I.	C.G.	H.G.
49.6	99.8	138.9	At2g39400	818525	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:unknown;BOPMFVA	O.I.	C.G.	H.G.
29.0	99.7	156.3	At1g22890	838896	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
26.8	99.7	42.8	At1g79840	844323	GL2 (GLABRA 2)	Glabra 2, a homeodomain protein affects epidermal cell identity including trichomes, root hairs, and seed coat. It also down-regulates seed oil content. Expressed in atrichoblasts and required to suppress root hair development. Also expressed abundantly during early seed development. Directly regulated by WER.	O.I.	C.G.	H.G.
22.5	99.6	38.3	At4g32280	829361	IAA29 (INDOLE-3-ACETIC ACID INDUCIBLE 29)	Auxin inducible protein.	O.I.	C.G.	H.G.
20.7	99.6	48.4	At1g80170	844357	polygalacturonase, putative / pectinase, putative	F:polygalacturonase activity;P:carbohydrate metabolic process;C:plant-type cell wall;FPBOMA	O.I.	C.G.	H.G.
18.2	99.5	41.9	At3g48720	824033	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
17.4	99.5	130.9	At3g04550	819611	unknown protein	F:unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;BPMO	O.I.	C.G.	H.G.
13.5	99.4	56.2	At3g59010	825070	pectinesterase family protein	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMO	O.I.	C.G.	H.G.
13.1	99.4	24.3	At1g06100	837119	fatty acid desaturase family protein	F:oxidoreductase activity;P:lipid metabolic process;C:unknown;BOMFPV	O.I.	C.G.	H.G.
12.9	99.3	21.5	At5g40330	834031	MYB23 (MYB DOMAIN PROTEIN 23)	Encodes a MYB gene that, when overexpressed ectopically, can induce ectopic trichome formation. It is a member of subgroup 15, together with WER and GL1. Members of this subgroup share a conserved motif of 19 amino acids in the putative transcription activation domain at the C-terminal end. The gene is expressed in leaves, stems, flowers, seeds and roots and quite strongly in trichomes. There is partial functional redundancy between ATMYB23 and GL1. The two proteins are functionally equivalent with respect to the regulation of trichome initiation but not with respect to trichome branching - which is controlled by MYB23 and not GL1.	O.I.	C.G.	H.G.
12.7	99.3	57.4	At1g77210	844057	sugar transporter, putative	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:plasma membrane, membrane;BFMPOA	O.I.	C.G.	H.G.
12.7	99.3	16.8	At4g16750	827379	DRE-binding transcription factor, putative	encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.	O.I.	C.G.	H.G.
11.5	99.3	1.1	At4g03810	3770158	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
11.0	99.2	171.2	At1g04430	839522	dehydration-responsive protein-related	F:unknown;P:biological_process unknown;C:Golgi apparatus, plasma membrane;PBO	O.I.	C.G.	H.G.
10.6	99.2	35.5	At5g54630	835552	zinc finger protein-related	F:transcription factor activity;P:regulation of transcription;C:intracellular;PFMO	O.I.	C.G.	H.G.
10.6	99.2	20.2	At1g74810	843820	BOR5	F:anion exchanger activity;P:anion transport;C:integral to membrane, membrane;MFPOBV	O.I.	C.G.	H.G.
9.7	99.1	312.6	At5g24490	832520	30S ribosomal protein, putative	F:structural constituent of ribosome, binding;P:translation, primary metabolic process;C:ribosome, chloroplast;BOPM	O.I.	C.G.	H.G.
9.6	99.1	1.7	At4g07620	3770532	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
9.1	99.1	673.2	At3g62030	825376	peptidyl-prolyl cis-trans isomerase, chloroplast / cyclophilin / rotamase / cyclosporin A-binding protein (ROC4)	nuclear-encoded chloroplast stromal cyclophilin CYP20-3 (also known as ROC4). Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.	O.I.	C.G.	H.G.
9.0	99.1	28.4	At3g19660	821503	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
8.7	99.0	9.4	At3g61840	825357	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.

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GSM ID	-
Assay name	E-ATMX-33-raw-cel-1562596057
GSE experiment	-

Microarray experiments to specifically-expressed genes

GSM ID - Assay name E-ATMX-33-raw-cel-1562596057 GSE experiment -

GSM ID -

Assay name E-ATMX-33-raw-cel-1562596057

GSE experiment -