CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID -

Assay name E-ATMX-32-raw-cel-1562974681

GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
158.5 99.9 65.3 At5g59050 836022 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
147.6 99.9 198.4 At5g16570 831519 GLN1 Encodes a cytosolic glutamine synthetase, the enzyme has high affinity with substrate ammonium O.I. C.G. H.G.
128.5 99.9 69.9 At1g11700 837714 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO O.I. C.G. H.G.
119.5 99.9 84.1 At3g57680 824937 peptidase S41 family protein F:serine-type peptidase activity, protein binding;P:proteolysis, intracellular signaling cascade;C:chloroplast thylakoid lumen, membrane;OBPM O.I. C.G. H.G.
108.9 99.9 132.1 At1g09240 837444 NAS3 (NICOTIANAMINE SYNTHASE 3) Encodes a nicotianamine synthase. O.I. C.G. H.G.
107.3 99.9 93.0 At4g23990 828499 ATCSLG3 encodes a protein similar to cellulose synthase O.I. C.G. H.G.
100.3 99.9 181.0 At5g54060 835489 UF3GT (udp-glucose:flavonoid 3-O-glucosyltransferase) F:transferase activity, transferring glycosyl groups;P:N-terminal protein myristoylation, response to sucrose stimulus;C:cellular_component unknown;PMBVFO O.I. C.G. H.G.
99.4 99.9 224.3 At5g17220 831586 ATGSTF12 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12) Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). Mutants display no pigments on leaves and stems. O.I. C.G. H.G.
99.4 99.9 166.3 At5g22300 832290 NIT4 (NITRILASE 4) encodes a nitrilase isomer. The purified enzyme shows a strong substrate specificity for beta-cyano-L-alanine, a intermediate product of the cyanide detoxification pathway. O.I. C.G. H.G.
97.6 99.9 111.9 At1g34040 840301 alliinase family protein F:pyridoxal phosphate binding, carbon-sulfur lyase activity, catalytic activity;P:biological_process unknown;C:endomembrane system;PBOAF O.I. C.G. H.G.
86.3 99.9 148.0 At4g14090 827046 UDP-glucoronosyl/UDP-glucosyl transferase family protein The At4g14090 encodes a anthocyanidin 5-O-glucosyltransferase specifically glucosylating the 5-position of the flavonoid A-ring. O.I. C.G. H.G.
83.2 99.9 213.7 At1g64360 842743 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;P O.I. C.G. H.G.
75.8 99.9 29.0 At2g32290 817789 BAM6 (BETA-AMYLASE 6) F:cation binding, beta-amylase activity, catalytic activity;P:cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process;C:chloroplast;PBO O.I. C.G. H.G.
63.0 99.8 110.6 At5g19460 832066 atnudt20 (Arabidopsis thaliana Nudix hydrolase homolog 20) F:hydrolase activity;P:biological_process unknown;C:chloroplast;BFOMP O.I. C.G. H.G.
62.1 99.8 54.7 At1g31820 840072 amino acid permease family protein F:cationic amino acid transmembrane transporter activity;P:transport, amino acid transport;C:membrane;BFMOPA O.I. C.G. H.G.
61.2 99.8 143.1 At5g13800 831225 hydrolase, alpha/beta fold family protein F:hydrolase activity, pheophytinase activity;P:chlorophyll catabolic process;C:chloroplast;BOPMAF O.I. C.G. H.G.
60.6 99.8 24.7 At3g16360 820883 AHP4 (HPT PHOSPHOTRANSMITTER 4) Encodes AHP4, a histidine-containing phosphotransmitter involved in Histidine (His)-to-Aspartate (Asp) phosphorelay signal transduction. AHP4 is one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs). AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6). O.I. C.G. H.G.
57.7 99.8 174.2 At4g12280 826837 copper amine oxidase family protein F:amine oxidase activity, quinone binding, copper ion binding;P:cellular amine metabolic process;C:cellular_component unknown;FBMOPA O.I. C.G. H.G.
57.0 99.8 59.7 At4g16890 827397 SNC1 (SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1) Encodes a Toll Interleukin1 receptor-nucleotide binding-Leu- rich repeat-type resistance gene (TIR-NB-LRR-type) involved in the salicylic acid-dependent defense response pathway. Mutant plants constitutively express pathogenesis-related (PR) genes and are pathogen resistant. Resistance signaling in snc1 requires EDS1, MOS3 and PAD4. O.I. C.G. H.G.
52.8 99.8 105.2 At1g03495 3766646 transferase/ transferase, transferring acyl groups other than amino-acyl groups F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:unknown;PF O.I. C.G. H.G.
52.6 99.8 54.8 At3g23790 821961 AMP-binding protein, putative F:catalytic activity;P:metabolic process;C:chloroplast envelope;BOMFPAV O.I. C.G. H.G.
51.4 99.8 14.8 At3g03480 821249 CHAT (acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase) F:acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase activity;P:green leaf volatile biosynthetic process;C:cellular_component unknown;PF O.I. C.G. H.G.
50.5 99.8 45.3 At3g57540 824921 remorin family protein F:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMO O.I. C.G. H.G.
48.0 99.8 48.5 At4g24450 828547 PWD (PHOSPHOGLUCAN, WATER DIKINASE) F:kinase activity, ATP binding;P:phosphorylation;C:chloroplast envelope;BAPOF O.I. C.G. H.G.
46.1 99.8 41.2 At2g29370 817486 tropinone reductase, putative / tropine dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
46.0 99.8 103.5 At4g33040 829441 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:cellular_component unknown;PMFOB O.I. C.G. H.G.
41.9 99.8 221.4 At1g80130 844353 binding F:binding;P:response to oxidative stress;C:membrane;BPOMFAV O.I. C.G. H.G.
41.4 99.8 132.7 At5g18130 831931 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
41.2 99.8 108.2 At1g51090 841532 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;PBOMVF O.I. C.G. H.G.
40.6 99.8 72.9 At1g56650 842120 PAP1 (PRODUCTION OF ANTHOCYANIN PIGMENT 1) Encodes a putative MYB domain containing transcription factor involved in anthocyanin metabolism and radical scavenging. Essential for the sucrose-mediated expression of the dihydroflavonol reductase gene. O.I. C.G. H.G.
39.4 99.8 47.7 At2g43500 818951 RWP-RK domain-containing protein F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PBOMF O.I. C.G. H.G.
36.5 99.7 87.7 At1g28230 839717 PUP1 (PURINE PERMEASE 1) Encodes a transporter that transports purines,cytokinins and other adenine derivatives. Expressed in the leaf hydathodes where it may be involved in re-uptake of cytokinins during guttation. O.I. C.G. H.G.
35.8 99.7 104.6 At1g68050 843133 FKF1 (FLAVIN-BINDING, KELCH REPEAT, F BOX 1) Encodes FKF1, a flavin-binding kelch repeat F box protein, is clock-controlled, regulates transition to flowering. Forms a complex with GI on the CO promoter to regulate CO expression. O.I. C.G. H.G.
35.6 99.7 99.6 At4g14020 827038 rapid alkalinization factor (RALF) family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
35.6 99.7 77.2 At2g28720 817421 histone H2B, putative F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MOPFB O.I. C.G. H.G.
35.3 99.7 280.4 At5g35970 833589 DNA-binding protein, putative F:DNA binding;P:biological_process unknown;C:chloroplast, chloroplast envelope;BMOFPA O.I. C.G. H.G.
35.3 99.7 65.2 At4g15490 827221 UGT84A3 Encodes a protein that might have sinapic acid:UDP-glucose glucosyltransferase activity. O.I. C.G. H.G.
33.8 99.7 44.7 At1g73040 843635 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMO O.I. C.G. H.G.
33.6 99.7 77.3 At2g25625 817103 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
33.4 99.7 55.9 At1g64810 842789 APO1 (ACCUMULATION OF PHOTOSYSTEM ONE 1) chloroplast APO1 O.I. C.G. H.G.
32.4 99.7 24.0 At5g39030 833895 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
31.5 99.7 203.4 At5g23240 832388 DNAJ heat shock N-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:chloroplast;BOMPFAV O.I. C.G. H.G.
31.4 99.7 63.3 At2g16365 816133 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
31.4 99.7 54.2 At1g76570 843990 chlorophyll A-B binding family protein F:chlorophyll binding;P:response to blue light, response to far red light, photosynthesis;C:light-harvesting complex, chloroplast, membrane;POM O.I. C.G. H.G.
31.2 99.7 75.9 At3g27110 822330 peptidase M48 family protein F:metalloendopeptidase activity;P:proteolysis;C:chloroplast, membrane;BOAPF O.I. C.G. H.G.
31.2 99.7 54.9 At2g47880 819400 glutaredoxin family protein F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFBO O.I. C.G. H.G.
31.0 99.7 48.9 At1g55760 842025 BTB/POZ domain-containing protein F:protein binding;P:biological_process unknown;C:unknown;MPOVF O.I. C.G. H.G.
31.0 99.7 45.2 At3g09650 820122 HCF152 (HIGH CHLOROPHYLL FLUORESCENCE 152) RNA binding protein involved in the processing of chloroplast psbB-psbT-psbH-petB-petD transcript unit. O.I. C.G. H.G.
31.0 99.7 36.3 At1g30500 839929 NF-YA7 (NUCLEAR FACTOR Y, SUBUNIT A7) F:transcription factor activity, specific transcriptional repressor activity;P:negative regulation of gene-specific transcription, regulation of transcription, DNA-dependent;C:CCAAT-binding factor complex, nucleus;PMFO O.I. C.G. H.G.
30.9 99.7 61.5 At5g23750 832440 remorin family protein F:DNA binding;P:biological_process unknown;C:cellular_component unknown;OMBFPVA O.I. C.G. H.G.
30.5 99.7 152.9 At3g03470 821250 CYP89A9 member of CYP89A O.I. C.G. H.G.
30.4 99.7 241.0 At2g21970 816733 SEP2 (STRESS ENHANCED PROTEIN 2) stress enhanced protein 2 (SEP2) chlorophyll a/b-binding protein O.I. C.G. H.G.
30.3 99.7 71.1 At5g38710 833862 proline oxidase, putative / osmotic stress-responsive proline dehydrogenase, putative F:proline dehydrogenase activity;P:proline catabolic process, glutamate biosynthetic process;C:unknown;BOMFPVA O.I. C.G. H.G.
28.9 99.7 41.0 At2g38465 818428 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P O.I. C.G. H.G.
28.5 99.7 79.9 At3g26280 822231 CYP71B4 cytochrome P450 monooxygenase O.I. C.G. H.G.
28.1 99.7 37.9 At2g15020 815991 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
27.4 99.7 75.9 At4g11960 826803 PGRL1B (PGR5-Like B) Encodes PGRL1B, a transmembrane protein present in thylakoids. PGRL1B has a highly homologous isoform PGRL1A encoded by At4g22890. Plants lacking PGRL1 show perturbation of cyclic electron flow, similar to PGR5-deficient plants. PGRL1 and PGR5 interact physically and associate with PSI (photosystem I). O.I. C.G. H.G.
27.2 99.7 81.5 At2g23390 816871 - F:molecular_function unknown;P:biological_process unknown;C:unknown;OBP O.I. C.G. H.G.
27.2 99.7 38.3 At2g03530 814882 UPS2 (UREIDE PERMEASE 2) Mediate high-affinity uracil and 5-FU (a toxic uracil analogue) transport when expressed in yeast and Xenopus oocytes.Involved in allantoin transport. O.I. C.G. H.G.
26.2 99.7 175.5 At5g42800 834291 DFR (DIHYDROFLAVONOL 4-REDUCTASE) dihydroflavonol reductase. Catalyzes the conversion of dihydroquercetin to leucocyanidin in the biosynthesis of anthocyanins. O.I. C.G. H.G.
26.2 99.7 73.7 At1g52880 841721 NAM (NO APICAL MERISTEM) Transcription factor with a NAC domain. Homologous to the petunia gene NAM which is required for the development of the shoot. Expressed in the embryo. O.I. C.G. H.G.
25.4 99.6 155.7 At2g46100 819218 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPO O.I. C.G. H.G.
25.1 99.6 18.8 At2g40130 818604 heat shock protein-related F:unknown;P:biological_process unknown;C:unknown;PB O.I. C.G. H.G.
24.9 99.6 556.7 At4g32940 829431 GAMMA-VPE (GAMMA VACUOLAR PROCESSING ENZYME) Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteinases that is expressed in vegetative organs and is upregulated in association with various types of cell death and under stressed conditions. They are essential in processing seed storage proteins and for mediating the susceptible response of toxin-induced cell death. O.I. C.G. H.G.
24.9 99.6 172.1 At3g14067 820621 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast, plasma membrane, vacuole, plant-type cell wall;BPOFAM O.I. C.G. H.G.
24.9 99.6 123.6 At1g31170 840004 SRX (SULFIREDOXIN) encodes a cysteine-sulfinic acid reductase (sulfiredoxin - EC 1.8.98.2) capable of reducing overoxidized plastidic 2-Cys-Prx involved in peroxide detoxification and response to oxidative stress O.I. C.G. H.G.
24.7 99.6 21.6 At3g29590 822623 AT5MAT At3g29590 (At5MAT) encodes a malonyl-CoA:anthocyanidin 5-O-glucoside-6"-O-malonyltransferase that is coordinately expressed with a epistatic 5-O-anthocyanidin glucosyltransferase (At4g14090). The enzyme is involved in the malonylation of anthocyanins in Arabidopsis. O.I. C.G. H.G.
24.6 99.6 176.7 At4g11570 826761 haloacid dehalogenase-like hydrolase family protein F:hydrolase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;BOPMAF O.I. C.G. H.G.
24.6 99.6 111.2 At3g10420 820206 sporulation protein-related F:nucleoside-triphosphatase activity, nucleotide binding;P:unknown;C:chloroplast;BOPAMF O.I. C.G. H.G.
24.6 99.6 104.9 At2g32160 817775 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FMOP O.I. C.G. H.G.
24.3 99.6 112.7 At4g12310 826840 CYP706A5 member of CYP706A O.I. C.G. H.G.
23.4 99.6 134.8 At3g24190 822005 ABC1 family protein F:protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;OBMPFAV O.I. C.G. H.G.
22.8 99.6 116.0 At4g10120 826603 ATSPS4F Encodes a protein with putative sucrose-phosphate synthase activity. O.I. C.G. H.G.
22.8 99.6 74.8 At1g79510 844289 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPMO O.I. C.G. H.G.
22.7 99.6 133.5 At5g39520 833948 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPO O.I. C.G. H.G.
22.6 99.6 220.6 At1g21000 838694 zinc-binding family protein F:binding;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
22.3 99.6 201.1 At2g20920 816626 unknown protein F:unknown;P:unknown;C:membrane;BPO O.I. C.G. H.G.
22.2 99.6 211.9 At5g05200 830402 ABC1 family protein F:protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast, plastoglobule;OBMPFAV O.I. C.G. H.G.
22.1 99.6 59.9 At4g10770 826672 OPT7 (OLIGOPEPTIDE TRANSPORTER 7) oligopeptide transporter O.I. C.G. H.G.
21.9 99.6 59.1 At4g31870 829316 ATGPX7 (glutathione peroxidase 7) Encodes glutathione peroxidase. O.I. C.G. H.G.
21.8 99.6 36.4 At4g32320 829366 APX6 Encodes a cytosolic ascorbate peroxidase APX6. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. O.I. C.G. H.G.
21.6 99.6 130.9 At1g06430 837154 FTSH8 encodes a FtsH protease that is localized to the chloroplast O.I. C.G. H.G.
21.6 99.6 57.1 At5g66490 836781 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P O.I. C.G. H.G.
21.4 99.6 94.5 At1g04350 839542 2-oxoglutarate-dependent dioxygenase, putative encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase O.I. C.G. H.G.
21.4 99.6 19.2 At2g29090 817457 CYP707A2 Encodes a protein with ABA 8'-hydroxylase activity, involved in ABA catabolism. Member of the CYP707A gene family. This gene predominantly accumulates in dry seeds and is up-regulated immediately following imbibition. CYP707A2 appears to play a major role in the rapid decrease in ABA levels during early seed imbibition. O.I. C.G. H.G.
21.3 99.6 141.9 At3g44880 823622 ACD1 (ACCELERATED CELL DEATH 1) Encodes a pheide a oxygenase (PAO). Accelerated cell death (acd1) mutants show rapid, spreading necrotic responses to both virulent and avirulent Pseudomonas syringae pv. maculicola or pv. tomato pathogens and to ethylene. O.I. C.G. H.G.
21.3 99.6 79.9 At1g22570 838863 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;BPOMF O.I. C.G. H.G.
21.1 99.6 103.6 At1g76960 844031 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
21.0 99.6 44.9 At5g43440 834364 2-oxoglutarate-dependent dioxygenase, putative encodes a protein whose sequence is similar to ACC oxidase O.I. C.G. H.G.
20.9 99.6 55.0 At2g03310 814860 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
20.7 99.6 44.1 At2g29320 817481 tropinone reductase, putative / tropine dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
20.5 99.6 68.1 At4g35300 829684 TMT2 (TONOPLAST MONOSACCHARIDE TRANSPORTER2) F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, nucleoside transmembrane transporter activity;P:in 6 processes;C:plasma membrane, vacuole, membrane;BFMPOA O.I. C.G. H.G.
20.3 99.6 103.0 At3g07700 819961 ABC1 family protein F:unknown;P:unknown;C:chloroplast;OBMPFAV O.I. C.G. H.G.
20.3 99.6 70.4 At1g57590 842135 carboxylesterase F:carboxylesterase activity;P:biological_process unknown;C:unknown;PMOB O.I. C.G. H.G.
20.2 99.6 13.6 At2g37580 818334 zinc finger (C3HC4-type RING finger) family protein F:protein binding, transferase activity, transferring glycosyl groups, zinc ion binding;P:unknown;C:unknown;PMOFV O.I. C.G. H.G.
19.9 99.6 189.2 At5g51070 835180 ERD1 (EARLY RESPONSIVE TO DEHYDRATION 1) ATP-dependent Clp protease regulatory subunit O.I. C.G. H.G.
19.3 99.6 69.0 At1g33970 840294 avirulence-responsive protein, putative / avirulence induced gene protein, putative / AIG protein, putative F:GTP binding;P:response to bacterium;C:cellular_component unknown;OMBFPAV O.I. C.G. H.G.
19.3 99.6 43.4 At1g57770 842152 amine oxidase family F:oxidoreductase activity;P:unknown;C:chloroplast;OBMPAF O.I. C.G. H.G.
19.2 99.6 88.3 At4g27830 828896 BGLU10 (BETA GLUCOSIDASE 10) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:vacuole;BOPMFA O.I. C.G. H.G.
19.2 99.6 42.3 At4g18810 827615 binding / catalytic/ transcription repressor F:transcription repressor activity, binding, catalytic activity;P:regulation of nitrogen utilization, metabolic process;C:chloroplast, vacuole;BOPFAM O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
158.5	99.9	65.3	At5g59050	836022	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
147.6	99.9	198.4	At5g16570	831519	GLN1	Encodes a cytosolic glutamine synthetase, the enzyme has high affinity with substrate ammonium	O.I.	C.G.	H.G.
128.5	99.9	69.9	At1g11700	837714	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO	O.I.	C.G.	H.G.
119.5	99.9	84.1	At3g57680	824937	peptidase S41 family protein	F:serine-type peptidase activity, protein binding;P:proteolysis, intracellular signaling cascade;C:chloroplast thylakoid lumen, membrane;OBPM	O.I.	C.G.	H.G.
108.9	99.9	132.1	At1g09240	837444	NAS3 (NICOTIANAMINE SYNTHASE 3)	Encodes a nicotianamine synthase.	O.I.	C.G.	H.G.
107.3	99.9	93.0	At4g23990	828499	ATCSLG3	encodes a protein similar to cellulose synthase	O.I.	C.G.	H.G.
100.3	99.9	181.0	At5g54060	835489	UF3GT (udp-glucose:flavonoid 3-O-glucosyltransferase)	F:transferase activity, transferring glycosyl groups;P:N-terminal protein myristoylation, response to sucrose stimulus;C:cellular_component unknown;PMBVFO	O.I.	C.G.	H.G.
99.4	99.9	224.3	At5g17220	831586	ATGSTF12 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12)	Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). Mutants display no pigments on leaves and stems.	O.I.	C.G.	H.G.
99.4	99.9	166.3	At5g22300	832290	NIT4 (NITRILASE 4)	encodes a nitrilase isomer. The purified enzyme shows a strong substrate specificity for beta-cyano-L-alanine, a intermediate product of the cyanide detoxification pathway.	O.I.	C.G.	H.G.
97.6	99.9	111.9	At1g34040	840301	alliinase family protein	F:pyridoxal phosphate binding, carbon-sulfur lyase activity, catalytic activity;P:biological_process unknown;C:endomembrane system;PBOAF	O.I.	C.G.	H.G.
86.3	99.9	148.0	At4g14090	827046	UDP-glucoronosyl/UDP-glucosyl transferase family protein	The At4g14090 encodes a anthocyanidin 5-O-glucosyltransferase specifically glucosylating the 5-position of the flavonoid A-ring.	O.I.	C.G.	H.G.
83.2	99.9	213.7	At1g64360	842743	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;P	O.I.	C.G.	H.G.
75.8	99.9	29.0	At2g32290	817789	BAM6 (BETA-AMYLASE 6)	F:cation binding, beta-amylase activity, catalytic activity;P:cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process;C:chloroplast;PBO	O.I.	C.G.	H.G.
63.0	99.8	110.6	At5g19460	832066	atnudt20 (Arabidopsis thaliana Nudix hydrolase homolog 20)	F:hydrolase activity;P:biological_process unknown;C:chloroplast;BFOMP	O.I.	C.G.	H.G.
62.1	99.8	54.7	At1g31820	840072	amino acid permease family protein	F:cationic amino acid transmembrane transporter activity;P:transport, amino acid transport;C:membrane;BFMOPA	O.I.	C.G.	H.G.
61.2	99.8	143.1	At5g13800	831225	hydrolase, alpha/beta fold family protein	F:hydrolase activity, pheophytinase activity;P:chlorophyll catabolic process;C:chloroplast;BOPMAF	O.I.	C.G.	H.G.
60.6	99.8	24.7	At3g16360	820883	AHP4 (HPT PHOSPHOTRANSMITTER 4)	Encodes AHP4, a histidine-containing phosphotransmitter involved in Histidine (His)-to-Aspartate (Asp) phosphorelay signal transduction. AHP4 is one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs). AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).	O.I.	C.G.	H.G.
57.7	99.8	174.2	At4g12280	826837	copper amine oxidase family protein	F:amine oxidase activity, quinone binding, copper ion binding;P:cellular amine metabolic process;C:cellular_component unknown;FBMOPA	O.I.	C.G.	H.G.
57.0	99.8	59.7	At4g16890	827397	SNC1 (SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1)	Encodes a Toll Interleukin1 receptor-nucleotide binding-Leu- rich repeat-type resistance gene (TIR-NB-LRR-type) involved in the salicylic acid-dependent defense response pathway. Mutant plants constitutively express pathogenesis-related (PR) genes and are pathogen resistant. Resistance signaling in snc1 requires EDS1, MOS3 and PAD4.	O.I.	C.G.	H.G.
52.8	99.8	105.2	At1g03495	3766646	transferase/ transferase, transferring acyl groups other than amino-acyl groups	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:unknown;PF	O.I.	C.G.	H.G.
52.6	99.8	54.8	At3g23790	821961	AMP-binding protein, putative	F:catalytic activity;P:metabolic process;C:chloroplast envelope;BOMFPAV	O.I.	C.G.	H.G.
51.4	99.8	14.8	At3g03480	821249	CHAT (acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase)	F:acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase activity;P:green leaf volatile biosynthetic process;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
50.5	99.8	45.3	At3g57540	824921	remorin family protein	F:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
48.0	99.8	48.5	At4g24450	828547	PWD (PHOSPHOGLUCAN, WATER DIKINASE)	F:kinase activity, ATP binding;P:phosphorylation;C:chloroplast envelope;BAPOF	O.I.	C.G.	H.G.
46.1	99.8	41.2	At2g29370	817486	tropinone reductase, putative / tropine dehydrogenase, putative	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
46.0	99.8	103.5	At4g33040	829441	glutaredoxin family protein	F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:cellular_component unknown;PMFOB	O.I.	C.G.	H.G.
41.9	99.8	221.4	At1g80130	844353	binding	F:binding;P:response to oxidative stress;C:membrane;BPOMFAV	O.I.	C.G.	H.G.
41.4	99.8	132.7	At5g18130	831931	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
41.2	99.8	108.2	At1g51090	841532	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;PBOMVF	O.I.	C.G.	H.G.
40.6	99.8	72.9	At1g56650	842120	PAP1 (PRODUCTION OF ANTHOCYANIN PIGMENT 1)	Encodes a putative MYB domain containing transcription factor involved in anthocyanin metabolism and radical scavenging. Essential for the sucrose-mediated expression of the dihydroflavonol reductase gene.	O.I.	C.G.	H.G.
39.4	99.8	47.7	At2g43500	818951	RWP-RK domain-containing protein	F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PBOMF	O.I.	C.G.	H.G.
36.5	99.7	87.7	At1g28230	839717	PUP1 (PURINE PERMEASE 1)	Encodes a transporter that transports purines,cytokinins and other adenine derivatives. Expressed in the leaf hydathodes where it may be involved in re-uptake of cytokinins during guttation.	O.I.	C.G.	H.G.
35.8	99.7	104.6	At1g68050	843133	FKF1 (FLAVIN-BINDING, KELCH REPEAT, F BOX 1)	Encodes FKF1, a flavin-binding kelch repeat F box protein, is clock-controlled, regulates transition to flowering. Forms a complex with GI on the CO promoter to regulate CO expression.	O.I.	C.G.	H.G.
35.6	99.7	99.6	At4g14020	827038	rapid alkalinization factor (RALF) family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
35.6	99.7	77.2	At2g28720	817421	histone H2B, putative	F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MOPFB	O.I.	C.G.	H.G.
35.3	99.7	280.4	At5g35970	833589	DNA-binding protein, putative	F:DNA binding;P:biological_process unknown;C:chloroplast, chloroplast envelope;BMOFPA	O.I.	C.G.	H.G.
35.3	99.7	65.2	At4g15490	827221	UGT84A3	Encodes a protein that might have sinapic acid:UDP-glucose glucosyltransferase activity.	O.I.	C.G.	H.G.
33.8	99.7	44.7	At1g73040	843635	jacalin lectin family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMO	O.I.	C.G.	H.G.
33.6	99.7	77.3	At2g25625	817103	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
33.4	99.7	55.9	At1g64810	842789	APO1 (ACCUMULATION OF PHOTOSYSTEM ONE 1)	chloroplast APO1	O.I.	C.G.	H.G.
32.4	99.7	24.0	At5g39030	833895	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
31.5	99.7	203.4	At5g23240	832388	DNAJ heat shock N-terminal domain-containing protein	F:unfolded protein binding, heat shock protein binding;P:protein folding;C:chloroplast;BOMPFAV	O.I.	C.G.	H.G.
31.4	99.7	63.3	At2g16365	816133	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
31.4	99.7	54.2	At1g76570	843990	chlorophyll A-B binding family protein	F:chlorophyll binding;P:response to blue light, response to far red light, photosynthesis;C:light-harvesting complex, chloroplast, membrane;POM	O.I.	C.G.	H.G.
31.2	99.7	75.9	At3g27110	822330	peptidase M48 family protein	F:metalloendopeptidase activity;P:proteolysis;C:chloroplast, membrane;BOAPF	O.I.	C.G.	H.G.
31.2	99.7	54.9	At2g47880	819400	glutaredoxin family protein	F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFBO	O.I.	C.G.	H.G.
31.0	99.7	48.9	At1g55760	842025	BTB/POZ domain-containing protein	F:protein binding;P:biological_process unknown;C:unknown;MPOVF	O.I.	C.G.	H.G.
31.0	99.7	45.2	At3g09650	820122	HCF152 (HIGH CHLOROPHYLL FLUORESCENCE 152)	RNA binding protein involved in the processing of chloroplast psbB-psbT-psbH-petB-petD transcript unit.	O.I.	C.G.	H.G.
31.0	99.7	36.3	At1g30500	839929	NF-YA7 (NUCLEAR FACTOR Y, SUBUNIT A7)	F:transcription factor activity, specific transcriptional repressor activity;P:negative regulation of gene-specific transcription, regulation of transcription, DNA-dependent;C:CCAAT-binding factor complex, nucleus;PMFO	O.I.	C.G.	H.G.
30.9	99.7	61.5	At5g23750	832440	remorin family protein	F:DNA binding;P:biological_process unknown;C:cellular_component unknown;OMBFPVA	O.I.	C.G.	H.G.
30.5	99.7	152.9	At3g03470	821250	CYP89A9	member of CYP89A	O.I.	C.G.	H.G.
30.4	99.7	241.0	At2g21970	816733	SEP2 (STRESS ENHANCED PROTEIN 2)	stress enhanced protein 2 (SEP2) chlorophyll a/b-binding protein	O.I.	C.G.	H.G.
30.3	99.7	71.1	At5g38710	833862	proline oxidase, putative / osmotic stress-responsive proline dehydrogenase, putative	F:proline dehydrogenase activity;P:proline catabolic process, glutamate biosynthetic process;C:unknown;BOMFPVA	O.I.	C.G.	H.G.
28.9	99.7	41.0	At2g38465	818428	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P	O.I.	C.G.	H.G.
28.5	99.7	79.9	At3g26280	822231	CYP71B4	cytochrome P450 monooxygenase	O.I.	C.G.	H.G.
28.1	99.7	37.9	At2g15020	815991	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
27.4	99.7	75.9	At4g11960	826803	PGRL1B (PGR5-Like B)	Encodes PGRL1B, a transmembrane protein present in thylakoids. PGRL1B has a highly homologous isoform PGRL1A encoded by At4g22890. Plants lacking PGRL1 show perturbation of cyclic electron flow, similar to PGR5-deficient plants. PGRL1 and PGR5 interact physically and associate with PSI (photosystem I).	O.I.	C.G.	H.G.
27.2	99.7	81.5	At2g23390	816871	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;OBP	O.I.	C.G.	H.G.
27.2	99.7	38.3	At2g03530	814882	UPS2 (UREIDE PERMEASE 2)	Mediate high-affinity uracil and 5-FU (a toxic uracil analogue) transport when expressed in yeast and Xenopus oocytes.Involved in allantoin transport.	O.I.	C.G.	H.G.
26.2	99.7	175.5	At5g42800	834291	DFR (DIHYDROFLAVONOL 4-REDUCTASE)	dihydroflavonol reductase. Catalyzes the conversion of dihydroquercetin to leucocyanidin in the biosynthesis of anthocyanins.	O.I.	C.G.	H.G.
26.2	99.7	73.7	At1g52880	841721	NAM (NO APICAL MERISTEM)	Transcription factor with a NAC domain. Homologous to the petunia gene NAM which is required for the development of the shoot. Expressed in the embryo.	O.I.	C.G.	H.G.
25.4	99.6	155.7	At2g46100	819218	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPO	O.I.	C.G.	H.G.
25.1	99.6	18.8	At2g40130	818604	heat shock protein-related	F:unknown;P:biological_process unknown;C:unknown;PB	O.I.	C.G.	H.G.
24.9	99.6	556.7	At4g32940	829431	GAMMA-VPE (GAMMA VACUOLAR PROCESSING ENZYME)	Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteinases that is expressed in vegetative organs and is upregulated in association with various types of cell death and under stressed conditions. They are essential in processing seed storage proteins and for mediating the susceptible response of toxin-induced cell death.	O.I.	C.G.	H.G.
24.9	99.6	172.1	At3g14067	820621	subtilase family protein	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast, plasma membrane, vacuole, plant-type cell wall;BPOFAM	O.I.	C.G.	H.G.
24.9	99.6	123.6	At1g31170	840004	SRX (SULFIREDOXIN)	encodes a cysteine-sulfinic acid reductase (sulfiredoxin - EC 1.8.98.2) capable of reducing overoxidized plastidic 2-Cys-Prx involved in peroxide detoxification and response to oxidative stress	O.I.	C.G.	H.G.
24.7	99.6	21.6	At3g29590	822623	AT5MAT	At3g29590 (At5MAT) encodes a malonyl-CoA:anthocyanidin 5-O-glucoside-6"-O-malonyltransferase that is coordinately expressed with a epistatic 5-O-anthocyanidin glucosyltransferase (At4g14090). The enzyme is involved in the malonylation of anthocyanins in Arabidopsis.	O.I.	C.G.	H.G.
24.6	99.6	176.7	At4g11570	826761	haloacid dehalogenase-like hydrolase family protein	F:hydrolase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;BOPMAF	O.I.	C.G.	H.G.
24.6	99.6	111.2	At3g10420	820206	sporulation protein-related	F:nucleoside-triphosphatase activity, nucleotide binding;P:unknown;C:chloroplast;BOPAMF	O.I.	C.G.	H.G.
24.6	99.6	104.9	At2g32160	817775	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FMOP	O.I.	C.G.	H.G.
24.3	99.6	112.7	At4g12310	826840	CYP706A5	member of CYP706A	O.I.	C.G.	H.G.
23.4	99.6	134.8	At3g24190	822005	ABC1 family protein	F:protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;OBMPFAV	O.I.	C.G.	H.G.
22.8	99.6	116.0	At4g10120	826603	ATSPS4F	Encodes a protein with putative sucrose-phosphate synthase activity.	O.I.	C.G.	H.G.
22.8	99.6	74.8	At1g79510	844289	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPMO	O.I.	C.G.	H.G.
22.7	99.6	133.5	At5g39520	833948	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPO	O.I.	C.G.	H.G.
22.6	99.6	220.6	At1g21000	838694	zinc-binding family protein	F:binding;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
22.3	99.6	201.1	At2g20920	816626	unknown protein	F:unknown;P:unknown;C:membrane;BPO	O.I.	C.G.	H.G.
22.2	99.6	211.9	At5g05200	830402	ABC1 family protein	F:protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast, plastoglobule;OBMPFAV	O.I.	C.G.	H.G.
22.1	99.6	59.9	At4g10770	826672	OPT7 (OLIGOPEPTIDE TRANSPORTER 7)	oligopeptide transporter	O.I.	C.G.	H.G.
21.9	99.6	59.1	At4g31870	829316	ATGPX7 (glutathione peroxidase 7)	Encodes glutathione peroxidase.	O.I.	C.G.	H.G.
21.8	99.6	36.4	At4g32320	829366	APX6	Encodes a cytosolic ascorbate peroxidase APX6. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms.	O.I.	C.G.	H.G.
21.6	99.6	130.9	At1g06430	837154	FTSH8	encodes a FtsH protease that is localized to the chloroplast	O.I.	C.G.	H.G.
21.6	99.6	57.1	At5g66490	836781	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P	O.I.	C.G.	H.G.
21.4	99.6	94.5	At1g04350	839542	2-oxoglutarate-dependent dioxygenase, putative	encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase	O.I.	C.G.	H.G.
21.4	99.6	19.2	At2g29090	817457	CYP707A2	Encodes a protein with ABA 8'-hydroxylase activity, involved in ABA catabolism. Member of the CYP707A gene family. This gene predominantly accumulates in dry seeds and is up-regulated immediately following imbibition. CYP707A2 appears to play a major role in the rapid decrease in ABA levels during early seed imbibition.	O.I.	C.G.	H.G.
21.3	99.6	141.9	At3g44880	823622	ACD1 (ACCELERATED CELL DEATH 1)	Encodes a pheide a oxygenase (PAO). Accelerated cell death (acd1) mutants show rapid, spreading necrotic responses to both virulent and avirulent Pseudomonas syringae pv. maculicola or pv. tomato pathogens and to ethylene.	O.I.	C.G.	H.G.
21.3	99.6	79.9	At1g22570	838863	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:membrane;BPOMF	O.I.	C.G.	H.G.
21.1	99.6	103.6	At1g76960	844031	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
21.0	99.6	44.9	At5g43440	834364	2-oxoglutarate-dependent dioxygenase, putative	encodes a protein whose sequence is similar to ACC oxidase	O.I.	C.G.	H.G.
20.9	99.6	55.0	At2g03310	814860	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
20.7	99.6	44.1	At2g29320	817481	tropinone reductase, putative / tropine dehydrogenase, putative	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
20.5	99.6	68.1	At4g35300	829684	TMT2 (TONOPLAST MONOSACCHARIDE TRANSPORTER2)	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, nucleoside transmembrane transporter activity;P:in 6 processes;C:plasma membrane, vacuole, membrane;BFMPOA	O.I.	C.G.	H.G.
20.3	99.6	103.0	At3g07700	819961	ABC1 family protein	F:unknown;P:unknown;C:chloroplast;OBMPFAV	O.I.	C.G.	H.G.
20.3	99.6	70.4	At1g57590	842135	carboxylesterase	F:carboxylesterase activity;P:biological_process unknown;C:unknown;PMOB	O.I.	C.G.	H.G.
20.2	99.6	13.6	At2g37580	818334	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, transferase activity, transferring glycosyl groups, zinc ion binding;P:unknown;C:unknown;PMOFV	O.I.	C.G.	H.G.
19.9	99.6	189.2	At5g51070	835180	ERD1 (EARLY RESPONSIVE TO DEHYDRATION 1)	ATP-dependent Clp protease regulatory subunit	O.I.	C.G.	H.G.
19.3	99.6	69.0	At1g33970	840294	avirulence-responsive protein, putative / avirulence induced gene protein, putative / AIG protein, putative	F:GTP binding;P:response to bacterium;C:cellular_component unknown;OMBFPAV	O.I.	C.G.	H.G.
19.3	99.6	43.4	At1g57770	842152	amine oxidase family	F:oxidoreductase activity;P:unknown;C:chloroplast;OBMPAF	O.I.	C.G.	H.G.
19.2	99.6	88.3	At4g27830	828896	BGLU10 (BETA GLUCOSIDASE 10)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:vacuole;BOPMFA	O.I.	C.G.	H.G.
19.2	99.6	42.3	At4g18810	827615	binding / catalytic/ transcription repressor	F:transcription repressor activity, binding, catalytic activity;P:regulation of nitrogen utilization, metabolic process;C:chloroplast, vacuole;BOPFAM	O.I.	C.G.	H.G.

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GSM ID	-
Assay name	E-ATMX-32-raw-cel-1562974681
GSE experiment	-

Microarray experiments to specifically-expressed genes

GSM ID - Assay name E-ATMX-32-raw-cel-1562974681 GSE experiment -

GSM ID -

Assay name E-ATMX-32-raw-cel-1562974681

GSE experiment -