Microarray experiments to specifically-expressed genes

GSM ID -
Assay name E-ATMX-32-raw-cel-1562974527
GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
177.1100.0152.3At1g56650842120PAP1 (PRODUCTION OF ANTHOCYANIN PIGMENT 1)Encodes a putative MYB domain containing transcription factor involved in anthocyanin metabolism and radical scavenging. Essential for the sucrose-mediated expression of the dihydroflavonol reductase gene.O.I.C.G.H.G.
89.499.9213.6At1g76960844031unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
84.899.9133.3At1g034953766646transferase/ transferase, transferring acyl groups other than amino-acyl groupsF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:unknown;PFO.I.C.G.H.G.
63.499.8143.9At5g54060835489UF3GT (udp-glucose:flavonoid 3-O-glucosyltransferase)F:transferase activity, transferring glycosyl groups;P:N-terminal protein myristoylation, response to sucrose stimulus;C:cellular_component unknown;PMBVFOO.I.C.G.H.G.
57.999.8171.2At5g17220831586ATGSTF12 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12)Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). Mutants display no pigments on leaves and stems.O.I.C.G.H.G.
57.499.825.2At2g32290817789BAM6 (BETA-AMYLASE 6)F:cation binding, beta-amylase activity, catalytic activity;P:cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process;C:chloroplast;PBOO.I.C.G.H.G.
57.199.867.8At4g23990828499ATCSLG3encodes a protein similar to cellulose synthaseO.I.C.G.H.G.
48.699.8163.3At1g64360842743unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;PO.I.C.G.H.G.
47.899.8100.3At1g28230839717PUP1 (PURINE PERMEASE 1)Encodes a transporter that transports purines,cytokinins and other adenine derivatives. Expressed in the leaf hydathodes where it may be involved in re-uptake of cytokinins during guttation.O.I.C.G.H.G.
42.699.8104.0At4g14090827046UDP-glucoronosyl/UDP-glucosyl transferase family proteinThe At4g14090 encodes a anthocyanidin 5-O-glucosyltransferase specifically glucosylating the 5-position of the flavonoid A-ring.O.I.C.G.H.G.
41.899.8221.1At1g80130844353bindingF:binding;P:response to oxidative stress;C:membrane;BPOMFAVO.I.C.G.H.G.
37.399.713.9At4g24010828501ATCSLG1encodes a protein similar to cellulose synthaseO.I.C.G.H.G.
36.499.7107.6At1g68600843190unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;BPFOO.I.C.G.H.G.
35.599.7213.7At4g22870828386leucoanthocyanidin dioxygenase, putative / anthocyanidin synthase, putativeF:oxidoreductase activity;P:unknown;C:cellular_component unknown;POBFMO.I.C.G.H.G.
29.299.753.2At2g47880819400glutaredoxin family proteinF:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFBOO.I.C.G.H.G.
27.399.7107.5At5g64770836598unknown proteinF:molecular_function unknown;P:unknown;C:endomembrane system;PO.I.C.G.H.G.
27.199.734.9At5g52320835308CYP96A4member of CYP96AO.I.C.G.H.G.
26.699.7159.5At2g46100819218unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPOO.I.C.G.H.G.
26.599.731.7At1g11700837714unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POO.I.C.G.H.G.
25.699.784.5At4g14020827038rapid alkalinization factor (RALF) family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
25.299.6171.9At5g42800834291DFR (DIHYDROFLAVONOL 4-REDUCTASE)dihydroflavonol reductase. Catalyzes the conversion of dihydroquercetin to leucocyanidin in the biosynthesis of anthocyanins.O.I.C.G.H.G.
24.199.6547.8At4g32940829431GAMMA-VPE (GAMMA VACUOLAR PROCESSING ENZYME)Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteinases that is expressed in vegetative organs and is upregulated in association with various types of cell death and under stressed conditions. They are essential in processing seed storage proteins and for mediating the susceptible response of toxin-induced cell death.O.I.C.G.H.G.
23.299.6148.1At5g47240834771atnudt8 (Arabidopsis thaliana Nudix hydrolase homolog 8)F:hydrolase activity;P:response to wounding;C:cytosol;BOMPAFVO.I.C.G.H.G.
22.399.6162.5At3g52180824383SEX4 (STARCH-EXCESS 4)Encodes a plant-specific protein phosphatase that contains a protein tyrosine phosphatase (PTP) catalytic domain and a kinase interaction sequence (KIS) domain. This protein interacts with the plant SnRK AKIN11. Binds starch. Localized in the chloroplast.O.I.C.G.H.G.
21.899.6156.4At1g67860843113unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
21.799.671.2At5g11840831057unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;OBPO.I.C.G.H.G.
21.399.677.9At1g51090841532heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:cellular_component unknown;PBOMVFO.I.C.G.H.G.
21.099.6432.9At1g67865843114unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
20.699.6164.6At5g23240832388DNAJ heat shock N-terminal domain-containing proteinF:unfolded protein binding, heat shock protein binding;P:protein folding;C:chloroplast;BOMPFAVO.I.C.G.H.G.
20.699.6100.3At4g09020826481ISA3 (ISOAMYLASE 3)Encodes an isoamylase-like protein. Mutant studies show that the gene is strongly involved in starch breakdown. A GUS-protein fusion product was shown to localize to the surface of chloroplastic structures reminiscent of starch granules. In the mutants, the chloroplastic α-amylase AMY3 is upregulated.O.I.C.G.H.G.
20.399.613.7At2g37580818334zinc finger (C3HC4-type RING finger) family proteinF:protein binding, transferase activity, transferring glycosyl groups, zinc ion binding;P:unknown;C:unknown;PMOFVO.I.C.G.H.G.
20.299.667.5At1g62560842553FMO GS-OX3 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 3)belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolatesO.I.C.G.H.G.
20.199.682.0At5g13800831225hydrolase, alpha/beta fold family proteinF:hydrolase activity, pheophytinase activity;P:chlorophyll catabolic process;C:chloroplast;BOPMAFO.I.C.G.H.G.
19.099.533.2At2g38465818428unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PO.I.C.G.H.G.
18.999.5283.9At5g23010832365MAM1 (METHYLTHIOALKYLMALATE SYNTHASE 1)Encodes a methylthioalkylmalate synthase, catalyzes the condensation reactions of the first two rounds of methionine chain elongation in the biosynthesis of methionine-derived glucosinolates.O.I.C.G.H.G.
18.799.599.2At4g12280826837copper amine oxidase family proteinF:amine oxidase activity, quinone binding, copper ion binding;P:cellular amine metabolic process;C:cellular_component unknown;FBMOPAO.I.C.G.H.G.
18.799.517.6At5g61290836250flavin-containing monooxygenase family protein / FMO family proteinF:NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:unknown;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.
18.499.5173.9At1g78680844204ATGGH2 (gamma-glutamyl hydrolase 2)The Arabidopsis protein AtGGH2 is a gamma-glutamyl hydrolase acting specifically on monoglutamates. The enzyme is involved in the tetrahydrofolate metabolism and located to the vacuole.O.I.C.G.H.G.
18.399.5135.1At5g27280832786zinc finger (DNL type) family proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MFPOO.I.C.G.H.G.
18.099.570.7At5g22300832290NIT4 (NITRILASE 4)encodes a nitrilase isomer. The purified enzyme shows a strong substrate specificity for beta-cyano-L-alanine, a intermediate product of the cyanide detoxification pathway.O.I.C.G.H.G.
17.399.599.7At1g28600839760lipase, putativeF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:cell wall;PBOMO.I.C.G.H.G.
17.399.547.1At1g34040840301alliinase family proteinF:pyridoxal phosphate binding, carbon-sulfur lyase activity, catalytic activity;P:biological_process unknown;C:endomembrane system;PBOAFO.I.C.G.H.G.
17.199.567.5At5g07990830693TT7 (TRANSPARENT TESTA 7)Required for flavonoid 3' hydroxylase activity.O.I.C.G.H.G.
17.199.533.1At2g39850818572identical protein binding / serine-type endopeptidaseF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:plant-type cell wall;BPOFAMO.I.C.G.H.G.
17.099.567.4At5g16570831519GLN1Encodes a cytosolic glutamine synthetase, the enzyme has high affinity with substrate ammoniumO.I.C.G.H.G.
15.999.585.9At1g56600842114AtGolS2 (Arabidopsis thaliana galactinol synthase 2)F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:cellular_component unknown;PMFVBOO.I.C.G.H.G.
15.999.576.4At4g17770827498ATTPS5Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active as well as a trehalose phosphatase (TPP)-like domain.O.I.C.G.H.G.
15.499.543.0At4g15490827221UGT84A3Encodes a protein that might have sinapic acid:UDP-glucose glucosyltransferase activity.O.I.C.G.H.G.
15.199.4144.6At3g44860823620FAMT (farnesoic acid carboxyl-O-methyltransferase)Encodes a farnesoic acid carboxyl-O-methyltransferase.O.I.C.G.H.G.
15.199.480.6At3g44450823570unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
15.099.4202.9At2g40840818682DPE2 (DISPROPORTIONATING ENZYME 2)Encodes a cytosolic protein with transglucosidase and amylomaltase activity. It is an essential component of the pathway from starch to sucrose and cellular metabolism in leaves at night. The protein binds to heteroglycans and utilizes glucose, mannose and xylose as acceptors. Fucose and galactose can also act as acceptors but less efficiently than the previous three. It was also was also recently reported to act on maltodextrins. On the other hand, arabinose and fructose were not efficiently used. Its role probably includes metabolizing maltose exported from the chloroplast. Studies using maltose extracted from the double mutant be2-1 be3-2 showed that this enzyme is preferentially active of β-maltose.O.I.C.G.H.G.
14.999.479.6At5g18130831931unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
14.999.474.2At1g53885841826senescence-associated protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
14.899.450.4At1g66390842957MYB90 (MYB DOMAIN PROTEIN 90)production of anthocyanin pigment 2 protein (PAP2)O.I.C.G.H.G.
14.699.432.7At1g16400838210CYP79F2Encodes cytochrome P450 CYP79F2.O.I.C.G.H.G.
14.399.4134.8At4g11570826761haloacid dehalogenase-like hydrolase family proteinF:hydrolase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;BOPMAFO.I.C.G.H.G.
14.399.452.7At5g19460832066atnudt20 (Arabidopsis thaliana Nudix hydrolase homolog 20)F:hydrolase activity;P:biological_process unknown;C:chloroplast;BFOMPO.I.C.G.H.G.
14.399.429.1At3g57680824937peptidase S41 family proteinF:serine-type peptidase activity, protein binding;P:proteolysis, intracellular signaling cascade;C:chloroplast thylakoid lumen, membrane;OBPMO.I.C.G.H.G.
14.099.488.8At4g16146827304-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
14.099.459.7At4g00880827989auxin-responsive family proteinF:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;POO.I.C.G.H.G.
13.899.433.8At5g58310835943MES18 (METHYL ESTERASE 18)Encodes a protein shown to have methyl IAA esterase activity in vitro. This protein does not act on methyl JA, MeSA, MeGA4, or MEGA9 in vitro.O.I.C.G.H.G.
13.799.419.3At3g25740822165MAP1B (METHIONINE AMINOPEPTIDASE 1C)Encodes a plastid localized methionine aminopeptidase. Formerly called MAP1C, now called MAP1B.O.I.C.G.H.G.
13.699.496.1At4g01080827902unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PFO.I.C.G.H.G.
13.399.4244.3At1g06460837158ACD32.1 (ALPHA-CRYSTALLIN DOMAIN 32.1)ACD32.1 encodes an alpha-crystallin domain containing protein with homology to small heat shock proteins.O.I.C.G.H.G.
13.399.498.6At1g07280837239bindingF:binding;P:biological_process unknown;C:chloroplast;PBOAFMO.I.C.G.H.G.
13.399.490.2At1g31170840004SRX (SULFIREDOXIN)encodes a cysteine-sulfinic acid reductase (sulfiredoxin - EC 1.8.98.2) capable of reducing overoxidized plastidic 2-Cys-Prx involved in peroxide detoxification and response to oxidative stressO.I.C.G.H.G.
13.299.423.7At1g30500839929NF-YA7 (NUCLEAR FACTOR Y, SUBUNIT A7)F:transcription factor activity, specific transcriptional repressor activity;P:negative regulation of gene-specific transcription, regulation of transcription, DNA-dependent;C:CCAAT-binding factor complex, nucleus;PMFOO.I.C.G.H.G.
12.999.334.7At1g64810842789APO1 (ACCUMULATION OF PHOTOSYSTEM ONE 1)chloroplast APO1O.I.C.G.H.G.
12.799.3298.5At3g19710821508BCAT4 (BRANCHED-CHAIN AMINOTRANSFERASE4)Belongs to the branched-chain amino acid aminotransferase gene family. Encodes a methionine-oxo-acid transaminase. Involved in the methionine chain elongation pathway that leads to the ultimate biosynthesis of methionine-derived glucosinolates.O.I.C.G.H.G.
12.799.3109.8At3g44880823622ACD1 (ACCELERATED CELL DEATH 1)Encodes a pheide a oxygenase (PAO). Accelerated cell death (acd1) mutants show rapid, spreading necrotic responses to both virulent and avirulent Pseudomonas syringae pv. maculicola or pv. tomato pathogens and to ethylene.O.I.C.G.H.G.
12.799.3107.8At1g13990837959unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
12.799.333.5At3g15780820821unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
12.599.388.1At2g36390818212SBE2.1 (starch branching enzyme 2.1)Encodes a starch branching enzyme (EC.2.4.1.18) similar to SBE2 from maize and rice. Expressed throughout plant tissues.O.I.C.G.H.G.
12.599.341.9At5g50800835152nodulin MtN3 family proteinF:unknown;P:unknown;C:endomembrane system, integral to membrane, membrane;PMOO.I.C.G.H.G.
12.499.345.6At2g28720817421histone H2B, putativeF:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MOPFBO.I.C.G.H.G.
12.099.369.9At4g27830828896BGLU10 (BETA GLUCOSIDASE 10)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:vacuole;BOPMFAO.I.C.G.H.G.
11.999.360.3At5g53420835423-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
11.799.3149.4At2g21970816733SEP2 (STRESS ENHANCED PROTEIN 2)stress enhanced protein 2 (SEP2) chlorophyll a/b-binding proteinO.I.C.G.H.G.
11.799.338.6At2g16365816133F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
11.599.351.8At4g33040829441glutaredoxin family proteinF:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:cellular_component unknown;PMFOBO.I.C.G.H.G.
11.599.335.3At5g20935832218unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;BPOO.I.C.G.H.G.
11.599.331.1At1g65860842897FMO GS-OX1 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 1)belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolatesO.I.C.G.H.G.
11.499.371.8At1g30260839906-F:molecular_function unknown;P:response to cytokinin stimulus;C:unknown;PO.I.C.G.H.G.
11.499.314.2At5g39030833895protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
11.399.3229.8At3g26580822266-F:unknown;P:biological_process unknown;C:chloroplast thylakoid membrane;MOFPBVAO.I.C.G.H.G.
11.399.3121.0At4g08870826458arginase, putativeEncodes one of the two arginase in the genome. Gene expression is enhanced by methyl jasmonate treatment.O.I.C.G.H.G.
11.299.221.7At2g15830816079unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
11.199.2149.8At5g05200830402ABC1 family proteinF:protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast, plastoglobule;OBMPFAVO.I.C.G.H.G.
11.199.217.2At5g59050836022unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
11.099.2350.5At1g23130838921Bet v I allergen family proteinF:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;PO.I.C.G.H.G.
11.099.272.1At1g70810843418C2 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOO.I.C.G.H.G.
10.999.251.5At2g23390816871-F:molecular_function unknown;P:biological_process unknown;C:unknown;OBPO.I.C.G.H.G.
10.899.2157.7At4g23890828489unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;OBPMFO.I.C.G.H.G.
10.899.242.6At5g38710833862proline oxidase, putative / osmotic stress-responsive proline dehydrogenase, putativeF:proline dehydrogenase activity;P:proline catabolic process, glutamate biosynthetic process;C:unknown;BOMFPVAO.I.C.G.H.G.
10.799.241.4At1g09240837444NAS3 (NICOTIANAMINE SYNTHASE 3)Encodes a nicotianamine synthase.O.I.C.G.H.G.
10.699.225.1At5g60100836132APRR3 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 3)Encodes pseudo-response regulator 3 (APRR3/PRR3). PRR3 transcript levels vary in a circadian pattern with peak expression at dusk under long and short day conditions. PRR3 affects the period of the circadian clock and seedlings with reduced levels of PRR3 have shorter periods, based on transcriptional assays of clock-regulated genes. PRR3 is expressed in the vasculature of cotyledons and leaves where it may help stabilize the TOC1 protein by preventing interactions between TOC1 and the F-box protein ZTL.O.I.C.G.H.G.
10.599.2241.6At3g46970823850PHS2 (ALPHA-GLUCAN PHOSPHORYLASE 2)Encodes a cytosolic alpha-glucan phosphorylase. In vitro, the enzyme has a preference for branched polysaccharides, such as glycogen.O.I.C.G.H.G.
10.499.2245.9At4g13770827011CYP83A1 (CYTOCHROME P450 83A1)Encodes a cytochrome p450 enzyme that catalyzes the initial conversion of aldoximes to thiohydroximates in the synthesis of glucosinolates not derived from tryptophan. Also has a role in auxin homeostasis.O.I.C.G.H.G.
10.499.299.4At1g56300842083DNAJ heat shock N-terminal domain-containing proteinF:heat shock protein binding;P:protein folding, response to cyclopentenone;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
10.399.272.3At5g17050831568UGT78D2 (UDP-GLUCOSYL TRANSFERASE 78D2)The At5g17050 encodes a anthocyanidin 3-O-glucosyltransferase which specifically glucosylates the 3-position of the flavonoid C-ring. Anthocyanidins such as cyanidin and pelargonidin as well as flavonols such as kaempferol and quercetin are accepted substrates.O.I.C.G.H.G.



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