CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID -

Assay name E-ATMX-32-raw-cel-1562974504

GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
92.7 99.9 59.3 At1g11700 837714 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO O.I. C.G. H.G.
46.0 99.8 60.9 At4g23990 828499 ATCSLG3 encodes a protein similar to cellulose synthase O.I. C.G. H.G.
41.2 99.8 150.5 At1g64360 842743 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;P O.I. C.G. H.G.
39.1 99.8 49.4 At4g16890 827397 SNC1 (SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1) Encodes a Toll Interleukin1 receptor-nucleotide binding-Leu- rich repeat-type resistance gene (TIR-NB-LRR-type) involved in the salicylic acid-dependent defense response pathway. Mutant plants constitutively express pathogenesis-related (PR) genes and are pathogen resistant. Resistance signaling in snc1 requires EDS1, MOS3 and PAD4. O.I. C.G. H.G.
37.0 99.7 20.2 At2g32290 817789 BAM6 (BETA-AMYLASE 6) F:cation binding, beta-amylase activity, catalytic activity;P:cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process;C:chloroplast;PBO O.I. C.G. H.G.
35.3 99.7 99.1 At5g22300 832290 NIT4 (NITRILASE 4) encodes a nitrilase isomer. The purified enzyme shows a strong substrate specificity for beta-cyano-L-alanine, a intermediate product of the cyanide detoxification pathway. O.I. C.G. H.G.
35.0 99.7 133.6 At1g76960 844031 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
31.4 99.7 29.0 At5g59050 836022 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
30.6 99.7 62.6 At1g34040 840301 alliinase family protein F:pyridoxal phosphate binding, carbon-sulfur lyase activity, catalytic activity;P:biological_process unknown;C:endomembrane system;PBOAF O.I. C.G. H.G.
30.2 99.7 187.9 At1g80130 844353 binding F:binding;P:response to oxidative stress;C:membrane;BPOMFAV O.I. C.G. H.G.
29.6 99.7 78.9 At1g28230 839717 PUP1 (PURINE PERMEASE 1) Encodes a transporter that transports purines,cytokinins and other adenine derivatives. Expressed in the leaf hydathodes where it may be involved in re-uptake of cytokinins during guttation. O.I. C.G. H.G.
28.9 99.7 115.8 At1g56600 842114 AtGolS2 (Arabidopsis thaliana galactinol synthase 2) F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:cellular_component unknown;PMFVBO O.I. C.G. H.G.
28.0 99.7 89.3 At1g51090 841532 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;PBOMVF O.I. C.G. H.G.
27.0 99.7 188.3 At5g23240 832388 DNAJ heat shock N-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:chloroplast;BOMPFAV O.I. C.G. H.G.
27.0 99.7 107.0 At5g64770 836598 unknown protein F:molecular_function unknown;P:unknown;C:endomembrane system;P O.I. C.G. H.G.
26.8 99.7 118.8 At4g12280 826837 copper amine oxidase family protein F:amine oxidase activity, quinone binding, copper ion binding;P:cellular amine metabolic process;C:cellular_component unknown;FBMOPA O.I. C.G. H.G.
26.2 99.7 50.3 At2g47880 819400 glutaredoxin family protein F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFBO O.I. C.G. H.G.
24.8 99.6 81.4 At5g16570 831519 GLN1 Encodes a cytosolic glutamine synthetase, the enzyme has high affinity with substrate ammonium O.I. C.G. H.G.
23.4 99.6 88.6 At5g13800 831225 hydrolase, alpha/beta fold family protein F:hydrolase activity, pheophytinase activity;P:chlorophyll catabolic process;C:chloroplast;BOPMAF O.I. C.G. H.G.
22.7 99.6 43.4 At5g58310 835943 MES18 (METHYL ESTERASE 18) Encodes a protein shown to have methyl IAA esterase activity in vitro. This protein does not act on methyl JA, MeSA, MeGA4, or MEGA9 in vitro. O.I. C.G. H.G.
22.0 99.6 161.5 At3g52180 824383 SEX4 (STARCH-EXCESS 4) Encodes a plant-specific protein phosphatase that contains a protein tyrosine phosphatase (PTP) catalytic domain and a kinase interaction sequence (KIS) domain. This protein interacts with the plant SnRK AKIN11. Binds starch. Localized in the chloroplast. O.I. C.G. H.G.
21.5 99.6 222.8 At4g19170 827655 NCED4 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 4) chloroplast-targeted member of a family of enzymes similar to nine-cis-epoxycarotenoid dioxygenase O.I. C.G. H.G.
20.8 99.6 508.9 At4g32940 829431 GAMMA-VPE (GAMMA VACUOLAR PROCESSING ENZYME) Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteinases that is expressed in vegetative organs and is upregulated in association with various types of cell death and under stressed conditions. They are essential in processing seed storage proteins and for mediating the susceptible response of toxin-induced cell death. O.I. C.G. H.G.
20.6 99.6 53.7 At5g50800 835152 nodulin MtN3 family protein F:unknown;P:unknown;C:endomembrane system, integral to membrane, membrane;PMO O.I. C.G. H.G.
20.4 99.6 34.4 At2g38465 818428 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P O.I. C.G. H.G.
20.3 99.6 92.8 At5g18130 831931 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
20.1 99.6 159.7 At4g11570 826761 haloacid dehalogenase-like hydrolase family protein F:hydrolase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;BOPMAF O.I. C.G. H.G.
19.7 99.6 79.2 At1g68600 843190 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;BPFO O.I. C.G. H.G.
19.6 99.6 418.0 At1g67865 843114 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
19.3 99.6 73.3 At4g14020 827038 rapid alkalinization factor (RALF) family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
19.2 99.6 33.7 At3g57680 824937 peptidase S41 family protein F:serine-type peptidase activity, protein binding;P:proteolysis, intracellular signaling cascade;C:chloroplast thylakoid lumen, membrane;OBPM O.I. C.G. H.G.
19.1 99.6 56.6 At2g28720 817421 histone H2B, putative F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MOPFB O.I. C.G. H.G.
19.0 99.5 16.4 At2g40130 818604 heat shock protein-related F:unknown;P:biological_process unknown;C:unknown;PB O.I. C.G. H.G.
18.9 99.5 47.7 At4g15490 827221 UGT84A3 Encodes a protein that might have sinapic acid:UDP-glucose glucosyltransferase activity. O.I. C.G. H.G.
18.7 99.5 56.7 At1g01360 838452 unknown protein F:unknown;P:unknown;C:cellular_component unknown;PB O.I. C.G. H.G.
18.6 99.5 136.0 At5g27280 832786 zinc finger (DNL type) family protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MFPO O.I. C.G. H.G.
18.6 99.5 28.9 At5g52320 835308 CYP96A4 member of CYP96A O.I. C.G. H.G.
18.0 99.5 38.3 At4g23260 828425 ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:response to abscisic acid stimulus;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
17.8 99.5 130.3 At2g46100 819218 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPO O.I. C.G. H.G.
17.8 99.5 102.3 At4g10120 826603 ATSPS4F Encodes a protein with putative sucrose-phosphate synthase activity. O.I. C.G. H.G.
17.6 99.5 92.8 At4g09020 826481 ISA3 (ISOAMYLASE 3) Encodes an isoamylase-like protein. Mutant studies show that the gene is strongly involved in starch breakdown. A GUS-protein fusion product was shown to localize to the surface of chloroplastic structures reminiscent of starch granules. In the mutants, the chloroplastic α-amylase AMY3 is upregulated. O.I. C.G. H.G.
17.4 99.5 60.5 At4g11960 826803 PGRL1B (PGR5-Like B) Encodes PGRL1B, a transmembrane protein present in thylakoids. PGRL1B has a highly homologous isoform PGRL1A encoded by At4g22890. Plants lacking PGRL1 show perturbation of cyclic electron flow, similar to PGR5-deficient plants. PGRL1 and PGR5 interact physically and associate with PSI (photosystem I). O.I. C.G. H.G.
16.7 99.5 273.7 At1g06460 837158 ACD32.1 (ALPHA-CRYSTALLIN DOMAIN 32.1) ACD32.1 encodes an alpha-crystallin domain containing protein with homology to small heat shock proteins. O.I. C.G. H.G.
16.5 99.5 32.5 At2g39850 818572 identical protein binding / serine-type endopeptidase F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:plant-type cell wall;BPOFAM O.I. C.G. H.G.
15.9 99.5 61.0 At5g11840 831057 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OBP O.I. C.G. H.G.
15.8 99.5 14.9 At1g75250 843862 ATRL6 (ARABIDOPSIS RAD-LIKE 6) F:transcription factor activity;P:regulation of transcription;C:unknown;PMO O.I. C.G. H.G.
15.7 99.5 132.7 At1g67860 843113 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
15.6 99.5 107.6 At1g51805 841607 leucine-rich repeat protein kinase, putative F:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
15.5 99.5 27.3 At1g31820 840072 amino acid permease family protein F:cationic amino acid transmembrane transporter activity;P:transport, amino acid transport;C:membrane;BFMOPA O.I. C.G. H.G.
15.3 99.4 187.4 At4g23890 828489 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;OBPMF O.I. C.G. H.G.
15.2 99.4 38.1 At5g43440 834364 2-oxoglutarate-dependent dioxygenase, putative encodes a protein whose sequence is similar to ACC oxidase O.I. C.G. H.G.
15.2 99.4 16.4 At5g39030 833895 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
14.9 99.4 40.3 At5g20935 832218 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;BPO O.I. C.G. H.G.
14.9 99.4 39.4 At2g32860 817847 BGLU33 (BETA GLUCOSIDASE 33) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA O.I. C.G. H.G.
14.9 99.4 32.9 At1g16400 838210 CYP79F2 Encodes cytochrome P450 CYP79F2. O.I. C.G. H.G.
14.7 99.4 200.8 At2g40840 818682 DPE2 (DISPROPORTIONATING ENZYME 2) Encodes a cytosolic protein with transglucosidase and amylomaltase activity. It is an essential component of the pathway from starch to sucrose and cellular metabolism in leaves at night. The protein binds to heteroglycans and utilizes glucose, mannose and xylose as acceptors. Fucose and galactose can also act as acceptors but less efficiently than the previous three. It was also was also recently reported to act on maltodextrins. On the other hand, arabinose and fructose were not efficiently used. Its role probably includes metabolizing maltose exported from the chloroplast. Studies using maltose extracted from the double mutant be2-1 be3-2 showed that this enzyme is preferentially active of β-maltose. O.I. C.G. H.G.
14.6 99.4 43.8 At1g56650 842120 PAP1 (PRODUCTION OF ANTHOCYANIN PIGMENT 1) Encodes a putative MYB domain containing transcription factor involved in anthocyanin metabolism and radical scavenging. Essential for the sucrose-mediated expression of the dihydroflavonol reductase gene. O.I. C.G. H.G.
14.5 99.4 156.8 At4g00780 828009 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM O.I. C.G. H.G.
14.3 99.4 165.3 At2g21970 816733 SEP2 (STRESS ENHANCED PROTEIN 2) stress enhanced protein 2 (SEP2) chlorophyll a/b-binding protein O.I. C.G. H.G.
14.3 99.4 60.1 At5g33290 833302 XGD1 (XYLOGALACTURONAN DEFICIENT 1) Acts as a xylogalacturonan xylosyltransferase within the XGA biosynthesis pathway. Involved in pectin biosynthesis. O.I. C.G. H.G.
14.3 99.4 25.6 At3g05340 819698 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMF O.I. C.G. H.G.
13.7 99.4 100.1 At1g07280 837239 binding F:binding;P:biological_process unknown;C:chloroplast;PBOAFM O.I. C.G. H.G.
13.5 99.4 68.3 At4g09760 826564 choline kinase, putative encodes a choline synthase whose gene expression is induced by high salt and mannitol. O.I. C.G. H.G.
13.4 99.4 58.3 At4g14090 827046 UDP-glucoronosyl/UDP-glucosyl transferase family protein The At4g14090 encodes a anthocyanidin 5-O-glucosyltransferase specifically glucosylating the 5-position of the flavonoid A-ring. O.I. C.G. H.G.
13.3 99.4 47.3 At2g23840 816916 HNH endonuclease domain-containing protein F:endonuclease activity, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;OBVPA O.I. C.G. H.G.
13.2 99.4 237.0 At1g73600 843694 methyltransferase/ phosphoethanolamine N-methyltransferase F:methyltransferase activity, phosphoethanolamine N-methyltransferase activity;P:metabolic process;C:unknown;BOFAPMV O.I. C.G. H.G.
13.0 99.4 162.1 At5g05200 830402 ABC1 family protein F:protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast, plastoglobule;OBMPFAV O.I. C.G. H.G.
12.9 99.3 88.8 At1g31170 840004 SRX (SULFIREDOXIN) encodes a cysteine-sulfinic acid reductase (sulfiredoxin - EC 1.8.98.2) capable of reducing overoxidized plastidic 2-Cys-Prx involved in peroxide detoxification and response to oxidative stress O.I. C.G. H.G.
12.9 99.3 85.4 At4g16146 827304 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
12.9 99.3 26.4 At2g03530 814882 UPS2 (UREIDE PERMEASE 2) Mediate high-affinity uracil and 5-FU (a toxic uracil analogue) transport when expressed in yeast and Xenopus oocytes.Involved in allantoin transport. O.I. C.G. H.G.
12.8 99.3 203.7 At1g67870 843115 glycine-rich protein F:unknown;P:biological_process unknown;C:unknown;MOBPFAV O.I. C.G. H.G.
12.7 99.3 56.9 At4g00880 827989 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO O.I. C.G. H.G.
12.6 99.3 74.9 At2g32160 817775 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FMOP O.I. C.G. H.G.
12.5 99.3 230.3 At5g23010 832365 MAM1 (METHYLTHIOALKYLMALATE SYNTHASE 1) Encodes a methylthioalkylmalate synthase, catalyzes the condensation reactions of the first two rounds of methionine chain elongation in the biosynthesis of methionine-derived glucosinolates. O.I. C.G. H.G.
12.5 99.3 73.4 At3g44450 823570 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
12.5 99.3 48.3 At1g21590 838760 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
12.5 99.3 23.3 At1g80800 3767731 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
12.4 99.3 53.8 At4g33040 829441 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:cellular_component unknown;PMFOB O.I. C.G. H.G.
12.4 99.3 37.7 At4g01390 828075 - F:molecular_function unknown;P:biological_process unknown;C:unknown;PO O.I. C.G. H.G.
12.3 99.3 108.1 At1g56300 842083 DNAJ heat shock N-terminal domain-containing protein F:heat shock protein binding;P:protein folding, response to cyclopentenone;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
12.3 99.3 87.2 At2g36390 818212 SBE2.1 (starch branching enzyme 2.1) Encodes a starch branching enzyme (EC.2.4.1.18) similar to SBE2 from maize and rice. Expressed throughout plant tissues. O.I. C.G. H.G.
12.2 99.3 105.7 At1g13990 837959 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
12.2 99.3 38.6 At4g16860 827395 RPP4 (recognition of peronospora parasitica 4) Confers resistance to Peronospora parasitica. RPP4 is coordinately regulated by transcriptional activation and RNA silencing. O.I. C.G. H.G.
12.2 99.3 24.5 At4g24450 828547 PWD (PHOSPHOGLUCAN, WATER DIKINASE) F:kinase activity, ATP binding;P:phosphorylation;C:chloroplast envelope;BAPOF O.I. C.G. H.G.
12.1 99.3 115.2 At1g19740 838563 ATP-dependent protease La (LON) domain-containing protein F:ATP-dependent peptidase activity;P:ATP-dependent proteolysis;C:chloroplast;OBMPF O.I. C.G. H.G.
12.1 99.3 47.3 At3g27110 822330 peptidase M48 family protein F:metalloendopeptidase activity;P:proteolysis;C:chloroplast, membrane;BOAPF O.I. C.G. H.G.
12.0 99.3 37.9 At2g32870 817848 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF O.I. C.G. H.G.
11.9 99.3 43.9 At4g10770 826672 OPT7 (OLIGOPEPTIDE TRANSPORTER 7) oligopeptide transporter O.I. C.G. H.G.
11.9 99.3 41.6 At2g03310 814860 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
11.9 99.3 34.9 At3g18500 821380 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOB O.I. C.G. H.G.
11.8 99.3 255.8 At3g46970 823850 PHS2 (ALPHA-GLUCAN PHOSPHORYLASE 2) Encodes a cytosolic alpha-glucan phosphorylase. In vitro, the enzyme has a preference for branched polysaccharides, such as glycogen. O.I. C.G. H.G.
11.8 99.3 37.3 At3g03870 821099 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
11.7 99.3 234.0 At3g26580 822266 - F:unknown;P:biological_process unknown;C:chloroplast thylakoid membrane;MOFPBVA O.I. C.G. H.G.
11.7 99.3 193.2 At4g32340 829368 - F:unknown;P:unknown;C:unknown;MPBOFVA O.I. C.G. H.G.
11.7 99.3 33.1 At1g64810 842789 APO1 (ACCUMULATION OF PHOTOSYSTEM ONE 1) chloroplast APO1 O.I. C.G. H.G.
11.7 99.3 25.9 At3g23790 821961 AMP-binding protein, putative F:catalytic activity;P:metabolic process;C:chloroplast envelope;BOMFPAV O.I. C.G. H.G.
11.7 99.3 22.3 At1g30500 839929 NF-YA7 (NUCLEAR FACTOR Y, SUBUNIT A7) F:transcription factor activity, specific transcriptional repressor activity;P:negative regulation of gene-specific transcription, regulation of transcription, DNA-dependent;C:CCAAT-binding factor complex, nucleus;PMFO O.I. C.G. H.G.
11.7 99.3 14.4 At4g35270 829680 RWP-RK domain-containing protein F:transcription factor activity;P:regulation of transcription;C:unknown;POMFBV O.I. C.G. H.G.
11.6 99.3 92.9 At3g11660 820338 NHL1 encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus. Localization of the gene product is similar to that of NHL3 (plasma membrane) but it is yet inconclusive. O.I. C.G. H.G.
11.6 99.3 53.2 At1g79510 844289 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPMO O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
92.7	99.9	59.3	At1g11700	837714	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO	O.I.	C.G.	H.G.
46.0	99.8	60.9	At4g23990	828499	ATCSLG3	encodes a protein similar to cellulose synthase	O.I.	C.G.	H.G.
41.2	99.8	150.5	At1g64360	842743	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;P	O.I.	C.G.	H.G.
39.1	99.8	49.4	At4g16890	827397	SNC1 (SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1)	Encodes a Toll Interleukin1 receptor-nucleotide binding-Leu- rich repeat-type resistance gene (TIR-NB-LRR-type) involved in the salicylic acid-dependent defense response pathway. Mutant plants constitutively express pathogenesis-related (PR) genes and are pathogen resistant. Resistance signaling in snc1 requires EDS1, MOS3 and PAD4.	O.I.	C.G.	H.G.
37.0	99.7	20.2	At2g32290	817789	BAM6 (BETA-AMYLASE 6)	F:cation binding, beta-amylase activity, catalytic activity;P:cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process;C:chloroplast;PBO	O.I.	C.G.	H.G.
35.3	99.7	99.1	At5g22300	832290	NIT4 (NITRILASE 4)	encodes a nitrilase isomer. The purified enzyme shows a strong substrate specificity for beta-cyano-L-alanine, a intermediate product of the cyanide detoxification pathway.	O.I.	C.G.	H.G.
35.0	99.7	133.6	At1g76960	844031	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
31.4	99.7	29.0	At5g59050	836022	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
30.6	99.7	62.6	At1g34040	840301	alliinase family protein	F:pyridoxal phosphate binding, carbon-sulfur lyase activity, catalytic activity;P:biological_process unknown;C:endomembrane system;PBOAF	O.I.	C.G.	H.G.
30.2	99.7	187.9	At1g80130	844353	binding	F:binding;P:response to oxidative stress;C:membrane;BPOMFAV	O.I.	C.G.	H.G.
29.6	99.7	78.9	At1g28230	839717	PUP1 (PURINE PERMEASE 1)	Encodes a transporter that transports purines,cytokinins and other adenine derivatives. Expressed in the leaf hydathodes where it may be involved in re-uptake of cytokinins during guttation.	O.I.	C.G.	H.G.
28.9	99.7	115.8	At1g56600	842114	AtGolS2 (Arabidopsis thaliana galactinol synthase 2)	F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:cellular_component unknown;PMFVBO	O.I.	C.G.	H.G.
28.0	99.7	89.3	At1g51090	841532	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;PBOMVF	O.I.	C.G.	H.G.
27.0	99.7	188.3	At5g23240	832388	DNAJ heat shock N-terminal domain-containing protein	F:unfolded protein binding, heat shock protein binding;P:protein folding;C:chloroplast;BOMPFAV	O.I.	C.G.	H.G.
27.0	99.7	107.0	At5g64770	836598	unknown protein	F:molecular_function unknown;P:unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
26.8	99.7	118.8	At4g12280	826837	copper amine oxidase family protein	F:amine oxidase activity, quinone binding, copper ion binding;P:cellular amine metabolic process;C:cellular_component unknown;FBMOPA	O.I.	C.G.	H.G.
26.2	99.7	50.3	At2g47880	819400	glutaredoxin family protein	F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFBO	O.I.	C.G.	H.G.
24.8	99.6	81.4	At5g16570	831519	GLN1	Encodes a cytosolic glutamine synthetase, the enzyme has high affinity with substrate ammonium	O.I.	C.G.	H.G.
23.4	99.6	88.6	At5g13800	831225	hydrolase, alpha/beta fold family protein	F:hydrolase activity, pheophytinase activity;P:chlorophyll catabolic process;C:chloroplast;BOPMAF	O.I.	C.G.	H.G.
22.7	99.6	43.4	At5g58310	835943	MES18 (METHYL ESTERASE 18)	Encodes a protein shown to have methyl IAA esterase activity in vitro. This protein does not act on methyl JA, MeSA, MeGA4, or MEGA9 in vitro.	O.I.	C.G.	H.G.
22.0	99.6	161.5	At3g52180	824383	SEX4 (STARCH-EXCESS 4)	Encodes a plant-specific protein phosphatase that contains a protein tyrosine phosphatase (PTP) catalytic domain and a kinase interaction sequence (KIS) domain. This protein interacts with the plant SnRK AKIN11. Binds starch. Localized in the chloroplast.	O.I.	C.G.	H.G.
21.5	99.6	222.8	At4g19170	827655	NCED4 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 4)	chloroplast-targeted member of a family of enzymes similar to nine-cis-epoxycarotenoid dioxygenase	O.I.	C.G.	H.G.
20.8	99.6	508.9	At4g32940	829431	GAMMA-VPE (GAMMA VACUOLAR PROCESSING ENZYME)	Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteinases that is expressed in vegetative organs and is upregulated in association with various types of cell death and under stressed conditions. They are essential in processing seed storage proteins and for mediating the susceptible response of toxin-induced cell death.	O.I.	C.G.	H.G.
20.6	99.6	53.7	At5g50800	835152	nodulin MtN3 family protein	F:unknown;P:unknown;C:endomembrane system, integral to membrane, membrane;PMO	O.I.	C.G.	H.G.
20.4	99.6	34.4	At2g38465	818428	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P	O.I.	C.G.	H.G.
20.3	99.6	92.8	At5g18130	831931	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
20.1	99.6	159.7	At4g11570	826761	haloacid dehalogenase-like hydrolase family protein	F:hydrolase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;BOPMAF	O.I.	C.G.	H.G.
19.7	99.6	79.2	At1g68600	843190	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;BPFO	O.I.	C.G.	H.G.
19.6	99.6	418.0	At1g67865	843114	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
19.3	99.6	73.3	At4g14020	827038	rapid alkalinization factor (RALF) family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
19.2	99.6	33.7	At3g57680	824937	peptidase S41 family protein	F:serine-type peptidase activity, protein binding;P:proteolysis, intracellular signaling cascade;C:chloroplast thylakoid lumen, membrane;OBPM	O.I.	C.G.	H.G.
19.1	99.6	56.6	At2g28720	817421	histone H2B, putative	F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MOPFB	O.I.	C.G.	H.G.
19.0	99.5	16.4	At2g40130	818604	heat shock protein-related	F:unknown;P:biological_process unknown;C:unknown;PB	O.I.	C.G.	H.G.
18.9	99.5	47.7	At4g15490	827221	UGT84A3	Encodes a protein that might have sinapic acid:UDP-glucose glucosyltransferase activity.	O.I.	C.G.	H.G.
18.7	99.5	56.7	At1g01360	838452	unknown protein	F:unknown;P:unknown;C:cellular_component unknown;PB	O.I.	C.G.	H.G.
18.6	99.5	136.0	At5g27280	832786	zinc finger (DNL type) family protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MFPO	O.I.	C.G.	H.G.
18.6	99.5	28.9	At5g52320	835308	CYP96A4	member of CYP96A	O.I.	C.G.	H.G.
18.0	99.5	38.3	At4g23260	828425	ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:response to abscisic acid stimulus;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
17.8	99.5	130.3	At2g46100	819218	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPO	O.I.	C.G.	H.G.
17.8	99.5	102.3	At4g10120	826603	ATSPS4F	Encodes a protein with putative sucrose-phosphate synthase activity.	O.I.	C.G.	H.G.
17.6	99.5	92.8	At4g09020	826481	ISA3 (ISOAMYLASE 3)	Encodes an isoamylase-like protein. Mutant studies show that the gene is strongly involved in starch breakdown. A GUS-protein fusion product was shown to localize to the surface of chloroplastic structures reminiscent of starch granules. In the mutants, the chloroplastic α-amylase AMY3 is upregulated.	O.I.	C.G.	H.G.
17.4	99.5	60.5	At4g11960	826803	PGRL1B (PGR5-Like B)	Encodes PGRL1B, a transmembrane protein present in thylakoids. PGRL1B has a highly homologous isoform PGRL1A encoded by At4g22890. Plants lacking PGRL1 show perturbation of cyclic electron flow, similar to PGR5-deficient plants. PGRL1 and PGR5 interact physically and associate with PSI (photosystem I).	O.I.	C.G.	H.G.
16.7	99.5	273.7	At1g06460	837158	ACD32.1 (ALPHA-CRYSTALLIN DOMAIN 32.1)	ACD32.1 encodes an alpha-crystallin domain containing protein with homology to small heat shock proteins.	O.I.	C.G.	H.G.
16.5	99.5	32.5	At2g39850	818572	identical protein binding / serine-type endopeptidase	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:plant-type cell wall;BPOFAM	O.I.	C.G.	H.G.
15.9	99.5	61.0	At5g11840	831057	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OBP	O.I.	C.G.	H.G.
15.8	99.5	14.9	At1g75250	843862	ATRL6 (ARABIDOPSIS RAD-LIKE 6)	F:transcription factor activity;P:regulation of transcription;C:unknown;PMO	O.I.	C.G.	H.G.
15.7	99.5	132.7	At1g67860	843113	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
15.6	99.5	107.6	At1g51805	841607	leucine-rich repeat protein kinase, putative	F:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
15.5	99.5	27.3	At1g31820	840072	amino acid permease family protein	F:cationic amino acid transmembrane transporter activity;P:transport, amino acid transport;C:membrane;BFMOPA	O.I.	C.G.	H.G.
15.3	99.4	187.4	At4g23890	828489	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;OBPMF	O.I.	C.G.	H.G.
15.2	99.4	38.1	At5g43440	834364	2-oxoglutarate-dependent dioxygenase, putative	encodes a protein whose sequence is similar to ACC oxidase	O.I.	C.G.	H.G.
15.2	99.4	16.4	At5g39030	833895	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
14.9	99.4	40.3	At5g20935	832218	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;BPO	O.I.	C.G.	H.G.
14.9	99.4	39.4	At2g32860	817847	BGLU33 (BETA GLUCOSIDASE 33)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA	O.I.	C.G.	H.G.
14.9	99.4	32.9	At1g16400	838210	CYP79F2	Encodes cytochrome P450 CYP79F2.	O.I.	C.G.	H.G.
14.7	99.4	200.8	At2g40840	818682	DPE2 (DISPROPORTIONATING ENZYME 2)	Encodes a cytosolic protein with transglucosidase and amylomaltase activity. It is an essential component of the pathway from starch to sucrose and cellular metabolism in leaves at night. The protein binds to heteroglycans and utilizes glucose, mannose and xylose as acceptors. Fucose and galactose can also act as acceptors but less efficiently than the previous three. It was also was also recently reported to act on maltodextrins. On the other hand, arabinose and fructose were not efficiently used. Its role probably includes metabolizing maltose exported from the chloroplast. Studies using maltose extracted from the double mutant be2-1 be3-2 showed that this enzyme is preferentially active of β-maltose.	O.I.	C.G.	H.G.
14.6	99.4	43.8	At1g56650	842120	PAP1 (PRODUCTION OF ANTHOCYANIN PIGMENT 1)	Encodes a putative MYB domain containing transcription factor involved in anthocyanin metabolism and radical scavenging. Essential for the sucrose-mediated expression of the dihydroflavonol reductase gene.	O.I.	C.G.	H.G.
14.5	99.4	156.8	At4g00780	828009	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM	O.I.	C.G.	H.G.
14.3	99.4	165.3	At2g21970	816733	SEP2 (STRESS ENHANCED PROTEIN 2)	stress enhanced protein 2 (SEP2) chlorophyll a/b-binding protein	O.I.	C.G.	H.G.
14.3	99.4	60.1	At5g33290	833302	XGD1 (XYLOGALACTURONAN DEFICIENT 1)	Acts as a xylogalacturonan xylosyltransferase within the XGA biosynthesis pathway. Involved in pectin biosynthesis.	O.I.	C.G.	H.G.
14.3	99.4	25.6	At3g05340	819698	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMF	O.I.	C.G.	H.G.
13.7	99.4	100.1	At1g07280	837239	binding	F:binding;P:biological_process unknown;C:chloroplast;PBOAFM	O.I.	C.G.	H.G.
13.5	99.4	68.3	At4g09760	826564	choline kinase, putative	encodes a choline synthase whose gene expression is induced by high salt and mannitol.	O.I.	C.G.	H.G.
13.4	99.4	58.3	At4g14090	827046	UDP-glucoronosyl/UDP-glucosyl transferase family protein	The At4g14090 encodes a anthocyanidin 5-O-glucosyltransferase specifically glucosylating the 5-position of the flavonoid A-ring.	O.I.	C.G.	H.G.
13.3	99.4	47.3	At2g23840	816916	HNH endonuclease domain-containing protein	F:endonuclease activity, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;OBVPA	O.I.	C.G.	H.G.
13.2	99.4	237.0	At1g73600	843694	methyltransferase/ phosphoethanolamine N-methyltransferase	F:methyltransferase activity, phosphoethanolamine N-methyltransferase activity;P:metabolic process;C:unknown;BOFAPMV	O.I.	C.G.	H.G.
13.0	99.4	162.1	At5g05200	830402	ABC1 family protein	F:protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast, plastoglobule;OBMPFAV	O.I.	C.G.	H.G.
12.9	99.3	88.8	At1g31170	840004	SRX (SULFIREDOXIN)	encodes a cysteine-sulfinic acid reductase (sulfiredoxin - EC 1.8.98.2) capable of reducing overoxidized plastidic 2-Cys-Prx involved in peroxide detoxification and response to oxidative stress	O.I.	C.G.	H.G.
12.9	99.3	85.4	At4g16146	827304	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
12.9	99.3	26.4	At2g03530	814882	UPS2 (UREIDE PERMEASE 2)	Mediate high-affinity uracil and 5-FU (a toxic uracil analogue) transport when expressed in yeast and Xenopus oocytes.Involved in allantoin transport.	O.I.	C.G.	H.G.
12.8	99.3	203.7	At1g67870	843115	glycine-rich protein	F:unknown;P:biological_process unknown;C:unknown;MOBPFAV	O.I.	C.G.	H.G.
12.7	99.3	56.9	At4g00880	827989	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
12.6	99.3	74.9	At2g32160	817775	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FMOP	O.I.	C.G.	H.G.
12.5	99.3	230.3	At5g23010	832365	MAM1 (METHYLTHIOALKYLMALATE SYNTHASE 1)	Encodes a methylthioalkylmalate synthase, catalyzes the condensation reactions of the first two rounds of methionine chain elongation in the biosynthesis of methionine-derived glucosinolates.	O.I.	C.G.	H.G.
12.5	99.3	73.4	At3g44450	823570	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
12.5	99.3	48.3	At1g21590	838760	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
12.5	99.3	23.3	At1g80800	3767731	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
12.4	99.3	53.8	At4g33040	829441	glutaredoxin family protein	F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:cellular_component unknown;PMFOB	O.I.	C.G.	H.G.
12.4	99.3	37.7	At4g01390	828075	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;PO	O.I.	C.G.	H.G.
12.3	99.3	108.1	At1g56300	842083	DNAJ heat shock N-terminal domain-containing protein	F:heat shock protein binding;P:protein folding, response to cyclopentenone;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
12.3	99.3	87.2	At2g36390	818212	SBE2.1 (starch branching enzyme 2.1)	Encodes a starch branching enzyme (EC.2.4.1.18) similar to SBE2 from maize and rice. Expressed throughout plant tissues.	O.I.	C.G.	H.G.
12.2	99.3	105.7	At1g13990	837959	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
12.2	99.3	38.6	At4g16860	827395	RPP4 (recognition of peronospora parasitica 4)	Confers resistance to Peronospora parasitica. RPP4 is coordinately regulated by transcriptional activation and RNA silencing.	O.I.	C.G.	H.G.
12.2	99.3	24.5	At4g24450	828547	PWD (PHOSPHOGLUCAN, WATER DIKINASE)	F:kinase activity, ATP binding;P:phosphorylation;C:chloroplast envelope;BAPOF	O.I.	C.G.	H.G.
12.1	99.3	115.2	At1g19740	838563	ATP-dependent protease La (LON) domain-containing protein	F:ATP-dependent peptidase activity;P:ATP-dependent proteolysis;C:chloroplast;OBMPF	O.I.	C.G.	H.G.
12.1	99.3	47.3	At3g27110	822330	peptidase M48 family protein	F:metalloendopeptidase activity;P:proteolysis;C:chloroplast, membrane;BOAPF	O.I.	C.G.	H.G.
12.0	99.3	37.9	At2g32870	817848	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF	O.I.	C.G.	H.G.
11.9	99.3	43.9	At4g10770	826672	OPT7 (OLIGOPEPTIDE TRANSPORTER 7)	oligopeptide transporter	O.I.	C.G.	H.G.
11.9	99.3	41.6	At2g03310	814860	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
11.9	99.3	34.9	At3g18500	821380	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOB	O.I.	C.G.	H.G.
11.8	99.3	255.8	At3g46970	823850	PHS2 (ALPHA-GLUCAN PHOSPHORYLASE 2)	Encodes a cytosolic alpha-glucan phosphorylase. In vitro, the enzyme has a preference for branched polysaccharides, such as glycogen.	O.I.	C.G.	H.G.
11.8	99.3	37.3	At3g03870	821099	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
11.7	99.3	234.0	At3g26580	822266	-	F:unknown;P:biological_process unknown;C:chloroplast thylakoid membrane;MOFPBVA	O.I.	C.G.	H.G.
11.7	99.3	193.2	At4g32340	829368	-	F:unknown;P:unknown;C:unknown;MPBOFVA	O.I.	C.G.	H.G.
11.7	99.3	33.1	At1g64810	842789	APO1 (ACCUMULATION OF PHOTOSYSTEM ONE 1)	chloroplast APO1	O.I.	C.G.	H.G.
11.7	99.3	25.9	At3g23790	821961	AMP-binding protein, putative	F:catalytic activity;P:metabolic process;C:chloroplast envelope;BOMFPAV	O.I.	C.G.	H.G.
11.7	99.3	22.3	At1g30500	839929	NF-YA7 (NUCLEAR FACTOR Y, SUBUNIT A7)	F:transcription factor activity, specific transcriptional repressor activity;P:negative regulation of gene-specific transcription, regulation of transcription, DNA-dependent;C:CCAAT-binding factor complex, nucleus;PMFO	O.I.	C.G.	H.G.
11.7	99.3	14.4	At4g35270	829680	RWP-RK domain-containing protein	F:transcription factor activity;P:regulation of transcription;C:unknown;POMFBV	O.I.	C.G.	H.G.
11.6	99.3	92.9	At3g11660	820338	NHL1	encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus. Localization of the gene product is similar to that of NHL3 (plasma membrane) but it is yet inconclusive.	O.I.	C.G.	H.G.
11.6	99.3	53.2	At1g79510	844289	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPMO	O.I.	C.G.	H.G.

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GSM ID	-
Assay name	E-ATMX-32-raw-cel-1562974504
GSE experiment	-

Microarray experiments to specifically-expressed genes

GSM ID - Assay name E-ATMX-32-raw-cel-1562974504 GSE experiment -

GSM ID -

Assay name E-ATMX-32-raw-cel-1562974504

GSE experiment -