CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID -

Assay name E-ATMX-31-raw-cel-1516948018

GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
735.7 100.0 125.2 At3g24310 822019 MYB305 (myb domain protein 305) snapdragon myb protein 305 homolog (myb) O.I. C.G. H.G.
426.9 100.0 176.3 At1g77380 844074 AAP3 Amino acid permease which transports basic amino acids. O.I. C.G. H.G.
286.4 100.0 129.6 At5g06730 830562 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plasma membrane;PFOBM O.I. C.G. H.G.
262.4 100.0 45.0 At1g63950 842698 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P O.I. C.G. H.G.
258.2 100.0 168.5 At2g18140 816327 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cell wall;PFOBM O.I. C.G. H.G.
250.6 100.0 109.9 At2g47950 819407 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
232.4 100.0 278.4 At1g25530 839139 lysine and histidine specific transporter, putative F:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;PMFOBA O.I. C.G. H.G.
232.2 100.0 161.8 At2g14210 815907 AGL44 (AGAMOUS-LIKE 44) MADS box gene, transcription factor O.I. C.G. H.G.
213.3 100.0 86.1 At3g57510 824918 ADPG1 Encodes ADPG1, a polygalacturonase protein involved in silique and anther dihiscence. Loss of function mutations have reduced seed set, indehiscent fruit and reduced pollen shedding. O.I. C.G. H.G.
193.9 100.0 344.6 At1g69880 843324 ATH8 (thioredoxin H-type 8) F:unknown;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;BOMPFAV O.I. C.G. H.G.
177.3 100.0 89.8 At5g39100 833903 GLP6 (GERMIN-LIKE PROTEIN 6) germin-like protein (GLP6) O.I. C.G. H.G.
141.1 99.9 113.1 At5g18840 832002 sugar transporter, putative F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BMFPOA O.I. C.G. H.G.
134.4 99.9 156.9 At3g47510 823905 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
133.7 99.9 39.2 At2g31180 817674 MYB14 (MYB DOMAIN PROTEIN 14) Member of the R2R3 factor gene family. O.I. C.G. H.G.
119.1 99.9 110.9 At4g31730 829301 GDU1 (GLUTAMINE DUMPER 1) Glutamine dumper1 is a putative transmembrane protein. It is involved in glutamine secretion O.I. C.G. H.G.
112.2 99.9 43.0 At4g37970 829953 CAD6 (CINNAMYL ALCOHOL DEHYDROGENASE 6) F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:cellular_component unknown;BOPFMAV O.I. C.G. H.G.
107.4 99.9 538.2 At2g05440 815093 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVA O.I. C.G. H.G.
104.7 99.9 65.1 At3g12750 820457 ZIP1 (ZINC TRANSPORTER 1 PRECURSOR) A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root. O.I. C.G. H.G.
104.5 99.9 98.5 At4g31330 829260 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPO O.I. C.G. H.G.
102.1 99.9 176.5 At3g29970 822700 germination protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
99.3 99.9 230.8 At1g66690 842987 S-adenosyl-L-methionine:carboxyl methyltransferase family protein F:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:cellular_component unknown;POBMF O.I. C.G. H.G.
98.6 99.9 19.3 At1g08080 837326 ACA7 (ALPHA CARBONIC ANHYDRASE 7) F:carbonate dehydratase activity, zinc ion binding;P:one-carbon compound metabolic process;C:endomembrane system;MBPOFV O.I. C.G. H.G.
96.0 99.9 221.8 At2g37870 818363 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
93.1 99.9 53.2 At1g16310 838200 cation efflux family protein F:cation transmembrane transporter activity;P:cation transport;C:membrane;BOFPAM O.I. C.G. H.G.
76.9 99.9 98.4 At1g01070 839550 nodulin MtN21 family protein F:unknown;P:unknown;C:membrane;BPOAFM O.I. C.G. H.G.
76.4 99.9 138.8 At1g20160 838606 ATSBT5.2 F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast;BPOFMA O.I. C.G. H.G.
73.2 99.9 89.3 At3g01970 821270 WRKY45 member of WRKY Transcription Factor; Group I O.I. C.G. H.G.
67.1 99.8 412.4 At3g12500 820429 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. O.I. C.G. H.G.
60.6 99.8 208.2 At1g14890 838054 enzyme inhibitor/ pectinesterase/ pectinesterase inhibitor F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
59.3 99.8 69.6 At1g28100 839703 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBFO O.I. C.G. H.G.
58.5 99.8 64.7 At5g42200 834225 zinc finger (C3HC4-type RING finger) family protein F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV O.I. C.G. H.G.
56.8 99.8 63.7 At1g23120 838920 major latex protein-related / MLP-related F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
55.5 99.8 193.8 At4g33420 829479 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:unknown;PFOBM O.I. C.G. H.G.
55.4 99.8 53.2 At1g12320 837786 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
54.6 99.8 113.1 At1g49570 841381 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB O.I. C.G. H.G.
54.6 99.8 51.0 At3g25710 822159 BHLH32 (BASIC HELIX-LOOP-HELIX 32) F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFO O.I. C.G. H.G.
51.1 99.8 439.7 At4g15910 827273 ATDI21 (ARABIDOPSIS THALIANA DROUGHT-INDUCED 21) encodes a gene whose transcript level in root and leaves increases to progressive drought stress. The transcript level is also affected by changes of endogenous or exogenous abscisic acid level. It appears to be a member of plant-specific gene family that includes late embryo-abundant and zinc- IAA-induced proteins in other plants. O.I. C.G. H.G.
50.8 99.8 50.3 At1g17590 838335 NF-YA8 (NUCLEAR FACTOR Y, SUBUNIT A8) F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:CCAAT-binding factor complex, nucleus, chloroplast;PMFOB O.I. C.G. H.G.
50.7 99.8 110.1 At4g01430 826685 nodulin MtN21 family protein F:unknown;P:unknown;C:endomembrane system, membrane;PBOAMF O.I. C.G. H.G.
50.4 99.8 89.9 At5g24090 832474 acidic endochitinase (CHIB1) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFBMO O.I. C.G. H.G.
50.2 99.8 125.7 At5g13330 831174 Rap2.6L (related to AP2 6L) encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. O.I. C.G. H.G.
49.2 99.8 408.0 At4g16260 827320 catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:response to salt stress;C:cell wall, plasma membrane;PO O.I. C.G. H.G.
49.0 99.8 173.8 At1g76930 844028 ATEXT4 (EXTENSIN 4) Encodes an Arabidopsis extensin gene that belongs to cell-wall hydroxyproline-rich glycoproteins. The cross-link of extensins enforces cell wall strength. Transgenic plants overexpressing this gene show an increase in stem thickness. O.I. C.G. H.G.
48.3 99.8 32.2 At3g13730 820582 CYP90D1 Encodes a cytochrome P-450 gene that is involved in brassinosteroid biosynthesis, most likely in the conversion step of teasterone (TE) to 3-dehydroteasterone (3DT), and/or 6-deoxoteasterone (6-deoxoTE) to 6-deoxo-3-dehydroteasterone (6-deoxo3DT); or the conversion of cathasterone (CT) to TE, and/or 6-deoxocathasterone (6-deoxoCT) to 6-deoxoTE. Recently, CYP90D1 was shown to catalyse the C-23 hydroxylation of several brassinosteroids (the enzyme has a broad specificity for 22-hydroxylated substrates). Member of the CYP90C CYP450 family. Similar to Cytochrome P450 90C1 (ROT3). O.I. C.G. H.G.
46.6 99.8 18.3 At4g13480 826980 AtMYB79 (myb domain protein 79) Member of the R2R3 factor gene family. O.I. C.G. H.G.
46.2 99.8 27.6 At1g13600 837921 AtbZIP58 (Arabidopsis thaliana basic leucine-zipper 58) F:transcription factor activity, protein heterodimerization activity, protein homodimerization activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;POMFB O.I. C.G. H.G.
45.3 99.8 353.7 At2g43510 818952 ATTI1 Member of the defensin-like (DEFL) family. Encodes putative trypsin inhibitor protein which may function in defense against herbivory. O.I. C.G. H.G.
45.1 99.8 84.8 At1g60680 842362 aldo/keto reductase family protein F:oxidoreductase activity, aldo-keto reductase activity;P:oxidation reduction;C:unknown;BOMFPA O.I. C.G. H.G.
44.6 99.8 92.5 At3g08040 819995 FRD3 (FERRIC REDUCTASE DEFECTIVE 3) Encodes a member of the MATE (multidrug and toxin efflux family), expressed in roots but not shoots. Mutants accumulate excess iron, manganese and zinc, and express root Fe(III) chelatase activity even under iron sufficiency conditions. FRD3 is likely to function in root xylem loading of an iron chelator or other factor necessary for efficient iron uptake out of the xylem or apoplastic space and into leaf cells. O.I. C.G. H.G.
43.4 99.8 20.0 At4g26460 828752 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
43.2 99.8 93.2 At2g29490 817498 ATGSTU1 (GLUTATHIONE S-TRANSFERASE TAU 1) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
42.3 99.8 524.5 At4g11650 826770 ATOSM34 (osmotin 34) osmotin-like protein O.I. C.G. H.G.
41.0 99.8 132.4 At2g18050 816317 HIS1-3 (HISTONE H1-3) encodes a structurally divergent linker histone whose gene expression is induced by dehydration and ABA. O.I. C.G. H.G.
41.0 99.8 50.9 At5g05860 830471 UGT76C2 F:in 6 functions;P:metabolic process;C:unknown;PMBVOF O.I. C.G. H.G.
40.4 99.8 157.1 At5g25770 832646 unknown protein F:unknown;P:biological_process unknown;C:unknown;BOAFP O.I. C.G. H.G.
40.4 99.8 94.2 At5g50400 835108 PAP27 (PURPLE ACID PHOSPHATASE 27) F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:endomembrane system;POMBF O.I. C.G. H.G.
39.7 99.8 18.9 At2g37440 818321 endonuclease/exonuclease/phosphatase family protein F:hydrolase activity, inositol or phosphatidylinositol phosphatase activity;P:biological_process unknown;C:unknown;MPFO O.I. C.G. H.G.
39.6 99.8 40.2 At5g12330 831108 LRP1 (LATERAL ROOT PRIMORDIUM 1) A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Expressed in lateral root primordia and induced by auxin. SWP1 is involved in the repression of LRP1 via histone deacetylation. O.I. C.G. H.G.
38.0 99.8 59.1 At3g14610 820689 CYP72A7 putative cytochrome P450 O.I. C.G. H.G.
37.5 99.7 107.0 At4g35480 829700 RHA3B Encodes a putative RING-H2 finger protein RHA3b. O.I. C.G. H.G.
37.2 99.7 76.5 At1g72830 843614 NF-YA3 (NUCLEAR FACTOR Y, SUBUNIT A3) Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues. O.I. C.G. H.G.
36.6 99.7 30.8 At1g67110 843031 CYP735A2 member of CYP709A O.I. C.G. H.G.
36.4 99.7 46.4 At2g24260 816961 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFO O.I. C.G. H.G.
35.7 99.7 99.1 At4g21680 828255 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:plasma membrane, membrane;BPMOF O.I. C.G. H.G.
35.4 99.7 46.7 At2g28660 817415 copper-binding family protein F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:chloroplast;OPMBF O.I. C.G. H.G.
35.3 99.7 47.3 At3g13380 820538 BRL3 (BRI1-LIKE 3) Similar to BRI, brassinosteroid receptor protein. O.I. C.G. H.G.
34.9 99.7 155.8 At1g12200 837773 flavin-containing monooxygenase family protein / FMO family protein F:NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
34.9 99.7 61.8 At2g16720 816173 MYB7 (MYB DOMAIN PROTEIN 7) Encodes a member of MYB3R- and R2R3- type MYB- encoding genes O.I. C.G. H.G.
34.8 99.7 44.4 At1g21890 838791 nodulin MtN21 family protein F:unknown;P:unknown;C:membrane;BPOAM O.I. C.G. H.G.
34.8 99.7 28.7 At2g18600 816375 RUB1-conjugating enzyme, putative F:ubiquitin-protein ligase activity, small conjugating protein ligase activity, acid-amino acid ligase activity, ATP binding;P:regulation of protein metabolic process, protein modification process, post-translational protein modification;C:cellular_component unknown;MFOPV O.I. C.G. H.G.
34.5 99.7 48.3 At3g05400 819704 sugar transporter, putative F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BMFPOA O.I. C.G. H.G.
32.8 99.7 122.3 At5g10180 830882 AST68 Encodes a low-affinity sulfate transporter expressed in the root cap and central cylinder, where it is induced by sulfur starvation. Expression in the shoot vascular system is not induced by sulfur starvation. O.I. C.G. H.G.
32.4 99.7 169.9 At1g18880 838469 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;PMBFO O.I. C.G. H.G.
32.3 99.7 212.1 At3g02910 821189 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOA O.I. C.G. H.G.
32.2 99.7 115.4 At1g17020 838272 SRG1 (SENESCENCE-RELATED GENE 1) Encodes a novel member of the Fe(II)/ascorbate oxidase gene family; senescence-related gene. O.I. C.G. H.G.
31.8 99.7 29.6 At1g54300 841871 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
31.7 99.7 59.0 At2g12290 815700 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
31.3 99.7 43.5 At4g24000 828500 ATCSLG2 encodes a protein similar to cellulose synthase O.I. C.G. H.G.
31.2 99.7 309.7 At3g18280 821356 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
31.1 99.7 296.9 At4g33720 829514 pathogenesis-related protein, putative F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB O.I. C.G. H.G.
30.9 99.7 57.1 At2g40970 818697 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PO O.I. C.G. H.G.
30.9 99.7 24.9 At5g38280 833810 PR5K putative receptor serine/threonine kinase PR5K (PR5K) mRNA, PR5-like receptor kinase O.I. C.G. H.G.
30.7 99.7 45.3 At1g14040 837965 - F:unknown;P:unknown;C:integral to membrane;FMPO O.I. C.G. H.G.
30.6 99.7 11.1 At5g66630 836795 DAR5 (DA1-RELATED PROTEIN 5) F:zinc ion binding;P:unknown;C:unknown;PMOBF O.I. C.G. H.G.
30.5 99.7 19.5 At1g77020 844038 DNAJ heat shock N-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
30.3 99.7 205.1 At3g02550 821112 LBD41 (LOB DOMAIN-CONTAINING PROTEIN 41) F:unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
30.3 99.7 157.7 At5g10580 830923 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPO O.I. C.G. H.G.
30.3 99.7 45.7 At3g48185 823974 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
29.9 99.7 69.7 At1g01640 839534 speckle-type POZ protein-related F:protein binding;P:biological_process unknown;C:cellular_component unknown;MPOVF O.I. C.G. H.G.
29.7 99.7 91.3 At2g44460 819053 BGLU28 (BETA GLUCOSIDASE 28) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:membrane;BOPMFA O.I. C.G. H.G.
29.6 99.7 65.6 At3g14280 820648 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
29.4 99.7 83.6 At5g43180 834336 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBO O.I. C.G. H.G.
29.4 99.7 49.7 At2g25790 817121 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;PMOBFAV O.I. C.G. H.G.
29.1 99.7 121.6 At4g33550 829494 lipid binding F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
28.8 99.7 86.2 At5g25890 832658 IAA28 (INDOLE-3-ACETIC ACID INDUCIBLE 28) encodes a protein that may be a negative regulator of lateral root formation in response to auxin. It is a member of IAA/ARF gene family and is plant-specific. Gain of function mutations in this gene suppresses lateral root formation and is resistant to inhibition of root elongation by auxin, cytokinin, and ethylene. O.I. C.G. H.G.
28.7 99.7 58.7 At3g63010 825476 GID1B (GA INSENSITIVE DWARF1B) Encodes a gibberellin (GA) receptor ortholog of the rice GA receptor gene (OsGID1). Has GA-binding activity, showing higher affinity to GA4. Interacts with DELLA proteins in vivo in the presence of GA4. O.I. C.G. H.G.
28.5 99.7 207.4 At3g13310 820531 DNAJ heat shock N-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:unknown;BOMFPAV O.I. C.G. H.G.
28.5 99.7 83.8 At4g34600 829612 unknown protein F:molecular_function unknown;P:unknown;C:endomembrane system;P O.I. C.G. H.G.
28.3 99.7 194.0 At3g60140 825184 DIN2 (DARK INDUCIBLE 2) Encodes a protein similar to beta-glucosidase and is a member of glycoside hydrolase family 1. Expression is induced after 24 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell. O.I. C.G. H.G.
28.2 99.7 47.5 At5g04080 830287 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PF O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
735.7	100.0	125.2	At3g24310	822019	MYB305 (myb domain protein 305)	snapdragon myb protein 305 homolog (myb)	O.I.	C.G.	H.G.
426.9	100.0	176.3	At1g77380	844074	AAP3	Amino acid permease which transports basic amino acids.	O.I.	C.G.	H.G.
286.4	100.0	129.6	At5g06730	830562	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plasma membrane;PFOBM	O.I.	C.G.	H.G.
262.4	100.0	45.0	At1g63950	842698	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P	O.I.	C.G.	H.G.
258.2	100.0	168.5	At2g18140	816327	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cell wall;PFOBM	O.I.	C.G.	H.G.
250.6	100.0	109.9	At2g47950	819407	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
232.4	100.0	278.4	At1g25530	839139	lysine and histidine specific transporter, putative	F:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;PMFOBA	O.I.	C.G.	H.G.
232.2	100.0	161.8	At2g14210	815907	AGL44 (AGAMOUS-LIKE 44)	MADS box gene, transcription factor	O.I.	C.G.	H.G.
213.3	100.0	86.1	At3g57510	824918	ADPG1	Encodes ADPG1, a polygalacturonase protein involved in silique and anther dihiscence. Loss of function mutations have reduced seed set, indehiscent fruit and reduced pollen shedding.	O.I.	C.G.	H.G.
193.9	100.0	344.6	At1g69880	843324	ATH8 (thioredoxin H-type 8)	F:unknown;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;BOMPFAV	O.I.	C.G.	H.G.
177.3	100.0	89.8	At5g39100	833903	GLP6 (GERMIN-LIKE PROTEIN 6)	germin-like protein (GLP6)	O.I.	C.G.	H.G.
141.1	99.9	113.1	At5g18840	832002	sugar transporter, putative	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BMFPOA	O.I.	C.G.	H.G.
134.4	99.9	156.9	At3g47510	823905	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
133.7	99.9	39.2	At2g31180	817674	MYB14 (MYB DOMAIN PROTEIN 14)	Member of the R2R3 factor gene family.	O.I.	C.G.	H.G.
119.1	99.9	110.9	At4g31730	829301	GDU1 (GLUTAMINE DUMPER 1)	Glutamine dumper1 is a putative transmembrane protein. It is involved in glutamine secretion	O.I.	C.G.	H.G.
112.2	99.9	43.0	At4g37970	829953	CAD6 (CINNAMYL ALCOHOL DEHYDROGENASE 6)	F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:cellular_component unknown;BOPFMAV	O.I.	C.G.	H.G.
107.4	99.9	538.2	At2g05440	815093	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVA	O.I.	C.G.	H.G.
104.7	99.9	65.1	At3g12750	820457	ZIP1 (ZINC TRANSPORTER 1 PRECURSOR)	A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root.	O.I.	C.G.	H.G.
104.5	99.9	98.5	At4g31330	829260	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPO	O.I.	C.G.	H.G.
102.1	99.9	176.5	At3g29970	822700	germination protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
99.3	99.9	230.8	At1g66690	842987	S-adenosyl-L-methionine:carboxyl methyltransferase family protein	F:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:cellular_component unknown;POBMF	O.I.	C.G.	H.G.
98.6	99.9	19.3	At1g08080	837326	ACA7 (ALPHA CARBONIC ANHYDRASE 7)	F:carbonate dehydratase activity, zinc ion binding;P:one-carbon compound metabolic process;C:endomembrane system;MBPOFV	O.I.	C.G.	H.G.
96.0	99.9	221.8	At2g37870	818363	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
93.1	99.9	53.2	At1g16310	838200	cation efflux family protein	F:cation transmembrane transporter activity;P:cation transport;C:membrane;BOFPAM	O.I.	C.G.	H.G.
76.9	99.9	98.4	At1g01070	839550	nodulin MtN21 family protein	F:unknown;P:unknown;C:membrane;BPOAFM	O.I.	C.G.	H.G.
76.4	99.9	138.8	At1g20160	838606	ATSBT5.2	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast;BPOFMA	O.I.	C.G.	H.G.
73.2	99.9	89.3	At3g01970	821270	WRKY45	member of WRKY Transcription Factor; Group I	O.I.	C.G.	H.G.
67.1	99.8	412.4	At3g12500	820429	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses.	O.I.	C.G.	H.G.
60.6	99.8	208.2	At1g14890	838054	enzyme inhibitor/ pectinesterase/ pectinesterase inhibitor	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
59.3	99.8	69.6	At1g28100	839703	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBFO	O.I.	C.G.	H.G.
58.5	99.8	64.7	At5g42200	834225	zinc finger (C3HC4-type RING finger) family protein	F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV	O.I.	C.G.	H.G.
56.8	99.8	63.7	At1g23120	838920	major latex protein-related / MLP-related	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
55.5	99.8	193.8	At4g33420	829479	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:unknown;PFOBM	O.I.	C.G.	H.G.
55.4	99.8	53.2	At1g12320	837786	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
54.6	99.8	113.1	At1g49570	841381	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB	O.I.	C.G.	H.G.
54.6	99.8	51.0	At3g25710	822159	BHLH32 (BASIC HELIX-LOOP-HELIX 32)	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFO	O.I.	C.G.	H.G.
51.1	99.8	439.7	At4g15910	827273	ATDI21 (ARABIDOPSIS THALIANA DROUGHT-INDUCED 21)	encodes a gene whose transcript level in root and leaves increases to progressive drought stress. The transcript level is also affected by changes of endogenous or exogenous abscisic acid level. It appears to be a member of plant-specific gene family that includes late embryo-abundant and zinc- IAA-induced proteins in other plants.	O.I.	C.G.	H.G.
50.8	99.8	50.3	At1g17590	838335	NF-YA8 (NUCLEAR FACTOR Y, SUBUNIT A8)	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:CCAAT-binding factor complex, nucleus, chloroplast;PMFOB	O.I.	C.G.	H.G.
50.7	99.8	110.1	At4g01430	826685	nodulin MtN21 family protein	F:unknown;P:unknown;C:endomembrane system, membrane;PBOAMF	O.I.	C.G.	H.G.
50.4	99.8	89.9	At5g24090	832474	acidic endochitinase (CHIB1)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFBMO	O.I.	C.G.	H.G.
50.2	99.8	125.7	At5g13330	831174	Rap2.6L (related to AP2 6L)	encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.	O.I.	C.G.	H.G.
49.2	99.8	408.0	At4g16260	827320	catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:response to salt stress;C:cell wall, plasma membrane;PO	O.I.	C.G.	H.G.
49.0	99.8	173.8	At1g76930	844028	ATEXT4 (EXTENSIN 4)	Encodes an Arabidopsis extensin gene that belongs to cell-wall hydroxyproline-rich glycoproteins. The cross-link of extensins enforces cell wall strength. Transgenic plants overexpressing this gene show an increase in stem thickness.	O.I.	C.G.	H.G.
48.3	99.8	32.2	At3g13730	820582	CYP90D1	Encodes a cytochrome P-450 gene that is involved in brassinosteroid biosynthesis, most likely in the conversion step of teasterone (TE) to 3-dehydroteasterone (3DT), and/or 6-deoxoteasterone (6-deoxoTE) to 6-deoxo-3-dehydroteasterone (6-deoxo3DT); or the conversion of cathasterone (CT) to TE, and/or 6-deoxocathasterone (6-deoxoCT) to 6-deoxoTE. Recently, CYP90D1 was shown to catalyse the C-23 hydroxylation of several brassinosteroids (the enzyme has a broad specificity for 22-hydroxylated substrates). Member of the CYP90C CYP450 family. Similar to Cytochrome P450 90C1 (ROT3).	O.I.	C.G.	H.G.
46.6	99.8	18.3	At4g13480	826980	AtMYB79 (myb domain protein 79)	Member of the R2R3 factor gene family.	O.I.	C.G.	H.G.
46.2	99.8	27.6	At1g13600	837921	AtbZIP58 (Arabidopsis thaliana basic leucine-zipper 58)	F:transcription factor activity, protein heterodimerization activity, protein homodimerization activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;POMFB	O.I.	C.G.	H.G.
45.3	99.8	353.7	At2g43510	818952	ATTI1	Member of the defensin-like (DEFL) family. Encodes putative trypsin inhibitor protein which may function in defense against herbivory.	O.I.	C.G.	H.G.
45.1	99.8	84.8	At1g60680	842362	aldo/keto reductase family protein	F:oxidoreductase activity, aldo-keto reductase activity;P:oxidation reduction;C:unknown;BOMFPA	O.I.	C.G.	H.G.
44.6	99.8	92.5	At3g08040	819995	FRD3 (FERRIC REDUCTASE DEFECTIVE 3)	Encodes a member of the MATE (multidrug and toxin efflux family), expressed in roots but not shoots. Mutants accumulate excess iron, manganese and zinc, and express root Fe(III) chelatase activity even under iron sufficiency conditions. FRD3 is likely to function in root xylem loading of an iron chelator or other factor necessary for efficient iron uptake out of the xylem or apoplastic space and into leaf cells.	O.I.	C.G.	H.G.
43.4	99.8	20.0	At4g26460	828752	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
43.2	99.8	93.2	At2g29490	817498	ATGSTU1 (GLUTATHIONE S-TRANSFERASE TAU 1)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
42.3	99.8	524.5	At4g11650	826770	ATOSM34 (osmotin 34)	osmotin-like protein	O.I.	C.G.	H.G.
41.0	99.8	132.4	At2g18050	816317	HIS1-3 (HISTONE H1-3)	encodes a structurally divergent linker histone whose gene expression is induced by dehydration and ABA.	O.I.	C.G.	H.G.
41.0	99.8	50.9	At5g05860	830471	UGT76C2	F:in 6 functions;P:metabolic process;C:unknown;PMBVOF	O.I.	C.G.	H.G.
40.4	99.8	157.1	At5g25770	832646	unknown protein	F:unknown;P:biological_process unknown;C:unknown;BOAFP	O.I.	C.G.	H.G.
40.4	99.8	94.2	At5g50400	835108	PAP27 (PURPLE ACID PHOSPHATASE 27)	F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:endomembrane system;POMBF	O.I.	C.G.	H.G.
39.7	99.8	18.9	At2g37440	818321	endonuclease/exonuclease/phosphatase family protein	F:hydrolase activity, inositol or phosphatidylinositol phosphatase activity;P:biological_process unknown;C:unknown;MPFO	O.I.	C.G.	H.G.
39.6	99.8	40.2	At5g12330	831108	LRP1 (LATERAL ROOT PRIMORDIUM 1)	A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Expressed in lateral root primordia and induced by auxin. SWP1 is involved in the repression of LRP1 via histone deacetylation.	O.I.	C.G.	H.G.
38.0	99.8	59.1	At3g14610	820689	CYP72A7	putative cytochrome P450	O.I.	C.G.	H.G.
37.5	99.7	107.0	At4g35480	829700	RHA3B	Encodes a putative RING-H2 finger protein RHA3b.	O.I.	C.G.	H.G.
37.2	99.7	76.5	At1g72830	843614	NF-YA3 (NUCLEAR FACTOR Y, SUBUNIT A3)	Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues.	O.I.	C.G.	H.G.
36.6	99.7	30.8	At1g67110	843031	CYP735A2	member of CYP709A	O.I.	C.G.	H.G.
36.4	99.7	46.4	At2g24260	816961	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFO	O.I.	C.G.	H.G.
35.7	99.7	99.1	At4g21680	828255	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:plasma membrane, membrane;BPMOF	O.I.	C.G.	H.G.
35.4	99.7	46.7	At2g28660	817415	copper-binding family protein	F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:chloroplast;OPMBF	O.I.	C.G.	H.G.
35.3	99.7	47.3	At3g13380	820538	BRL3 (BRI1-LIKE 3)	Similar to BRI, brassinosteroid receptor protein.	O.I.	C.G.	H.G.
34.9	99.7	155.8	At1g12200	837773	flavin-containing monooxygenase family protein / FMO family protein	F:NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
34.9	99.7	61.8	At2g16720	816173	MYB7 (MYB DOMAIN PROTEIN 7)	Encodes a member of MYB3R- and R2R3- type MYB- encoding genes	O.I.	C.G.	H.G.
34.8	99.7	44.4	At1g21890	838791	nodulin MtN21 family protein	F:unknown;P:unknown;C:membrane;BPOAM	O.I.	C.G.	H.G.
34.8	99.7	28.7	At2g18600	816375	RUB1-conjugating enzyme, putative	F:ubiquitin-protein ligase activity, small conjugating protein ligase activity, acid-amino acid ligase activity, ATP binding;P:regulation of protein metabolic process, protein modification process, post-translational protein modification;C:cellular_component unknown;MFOPV	O.I.	C.G.	H.G.
34.5	99.7	48.3	At3g05400	819704	sugar transporter, putative	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BMFPOA	O.I.	C.G.	H.G.
32.8	99.7	122.3	At5g10180	830882	AST68	Encodes a low-affinity sulfate transporter expressed in the root cap and central cylinder, where it is induced by sulfur starvation. Expression in the shoot vascular system is not induced by sulfur starvation.	O.I.	C.G.	H.G.
32.4	99.7	169.9	At1g18880	838469	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:membrane;PMBFO	O.I.	C.G.	H.G.
32.3	99.7	212.1	At3g02910	821189	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOA	O.I.	C.G.	H.G.
32.2	99.7	115.4	At1g17020	838272	SRG1 (SENESCENCE-RELATED GENE 1)	Encodes a novel member of the Fe(II)/ascorbate oxidase gene family; senescence-related gene.	O.I.	C.G.	H.G.
31.8	99.7	29.6	At1g54300	841871	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
31.7	99.7	59.0	At2g12290	815700	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
31.3	99.7	43.5	At4g24000	828500	ATCSLG2	encodes a protein similar to cellulose synthase	O.I.	C.G.	H.G.
31.2	99.7	309.7	At3g18280	821356	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
31.1	99.7	296.9	At4g33720	829514	pathogenesis-related protein, putative	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB	O.I.	C.G.	H.G.
30.9	99.7	57.1	At2g40970	818697	myb family transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PO	O.I.	C.G.	H.G.
30.9	99.7	24.9	At5g38280	833810	PR5K	putative receptor serine/threonine kinase PR5K (PR5K) mRNA, PR5-like receptor kinase	O.I.	C.G.	H.G.
30.7	99.7	45.3	At1g14040	837965	-	F:unknown;P:unknown;C:integral to membrane;FMPO	O.I.	C.G.	H.G.
30.6	99.7	11.1	At5g66630	836795	DAR5 (DA1-RELATED PROTEIN 5)	F:zinc ion binding;P:unknown;C:unknown;PMOBF	O.I.	C.G.	H.G.
30.5	99.7	19.5	At1g77020	844038	DNAJ heat shock N-terminal domain-containing protein	F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
30.3	99.7	205.1	At3g02550	821112	LBD41 (LOB DOMAIN-CONTAINING PROTEIN 41)	F:unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
30.3	99.7	157.7	At5g10580	830923	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPO	O.I.	C.G.	H.G.
30.3	99.7	45.7	At3g48185	823974	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
29.9	99.7	69.7	At1g01640	839534	speckle-type POZ protein-related	F:protein binding;P:biological_process unknown;C:cellular_component unknown;MPOVF	O.I.	C.G.	H.G.
29.7	99.7	91.3	At2g44460	819053	BGLU28 (BETA GLUCOSIDASE 28)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:membrane;BOPMFA	O.I.	C.G.	H.G.
29.6	99.7	65.6	At3g14280	820648	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
29.4	99.7	83.6	At5g43180	834336	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBO	O.I.	C.G.	H.G.
29.4	99.7	49.7	At2g25790	817121	leucine-rich repeat transmembrane protein kinase, putative	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;PMOBFAV	O.I.	C.G.	H.G.
29.1	99.7	121.6	At4g33550	829494	lipid binding	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
28.8	99.7	86.2	At5g25890	832658	IAA28 (INDOLE-3-ACETIC ACID INDUCIBLE 28)	encodes a protein that may be a negative regulator of lateral root formation in response to auxin. It is a member of IAA/ARF gene family and is plant-specific. Gain of function mutations in this gene suppresses lateral root formation and is resistant to inhibition of root elongation by auxin, cytokinin, and ethylene.	O.I.	C.G.	H.G.
28.7	99.7	58.7	At3g63010	825476	GID1B (GA INSENSITIVE DWARF1B)	Encodes a gibberellin (GA) receptor ortholog of the rice GA receptor gene (OsGID1). Has GA-binding activity, showing higher affinity to GA4. Interacts with DELLA proteins in vivo in the presence of GA4.	O.I.	C.G.	H.G.
28.5	99.7	207.4	At3g13310	820531	DNAJ heat shock N-terminal domain-containing protein	F:unfolded protein binding, heat shock protein binding;P:protein folding;C:unknown;BOMFPAV	O.I.	C.G.	H.G.
28.5	99.7	83.8	At4g34600	829612	unknown protein	F:molecular_function unknown;P:unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
28.3	99.7	194.0	At3g60140	825184	DIN2 (DARK INDUCIBLE 2)	Encodes a protein similar to beta-glucosidase and is a member of glycoside hydrolase family 1. Expression is induced after 24 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell.	O.I.	C.G.	H.G.
28.2	99.7	47.5	At5g04080	830287	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PF	O.I.	C.G.	H.G.

Back to the CoP portal site

Back to the KAGIANA project homepage

GSM ID	-
Assay name	E-ATMX-31-raw-cel-1516948018
GSE experiment	-

Microarray experiments to specifically-expressed genes

GSM ID - Assay name E-ATMX-31-raw-cel-1516948018 GSE experiment -

GSM ID -

Assay name E-ATMX-31-raw-cel-1516948018

GSE experiment -