Microarray experiments to specifically-expressed genes

GSM ID -
Assay name E-ATMX-31-raw-cel-1516947984
GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
519.0100.0105.1At3g24310822019MYB305 (myb domain protein 305)snapdragon myb protein 305 homolog (myb)O.I.C.G.H.G.
426.7100.0176.3At1g77380844074AAP3Amino acid permease which transports basic amino acids.O.I.C.G.H.G.
359.5100.0145.2At5g06730830562peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plasma membrane;PFOBMO.I.C.G.H.G.
222.9100.0100.7At5g39100833903GLP6 (GERMIN-LIKE PROTEIN 6)germin-like protein (GLP6)O.I.C.G.H.G.
196.1100.0148.6At2g14210815907AGL44 (AGAMOUS-LIKE 44)MADS box gene, transcription factorO.I.C.G.H.G.
180.9100.0245.7At1g25530839139lysine and histidine specific transporter, putativeF:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;PMFOBAO.I.C.G.H.G.
155.399.9130.7At2g18140816327peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cell wall;PFOBMO.I.C.G.H.G.
154.099.9118.2At5g18840832002sugar transporter, putativeF:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BMFPOAO.I.C.G.H.G.
148.299.984.5At2g47950819407unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
139.199.9266.9At2g37870818363protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
118.799.9110.7At4g31730829301GDU1 (GLUTAMINE DUMPER 1)Glutamine dumper1 is a putative transmembrane protein. It is involved in glutamine secretionO.I.C.G.H.G.
109.399.929.0At1g63950842698heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:cellular_component unknown;PO.I.C.G.H.G.
102.499.9250.4At1g69880843324ATH8 (thioredoxin H-type 8)F:unknown;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;BOMPFAVO.I.C.G.H.G.
92.499.961.1At3g12750820457ZIP1 (ZINC TRANSPORTER 1 PRECURSOR)A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root.O.I.C.G.H.G.
88.199.9487.5At2g05440815093glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVAO.I.C.G.H.G.
81.499.945.9At1g67110843031CYP735A2member of CYP709AO.I.C.G.H.G.
80.999.930.5At2g31180817674MYB14 (MYB DOMAIN PROTEIN 14)Member of the R2R3 factor gene family.O.I.C.G.H.G.
77.099.948.4At1g16310838200cation efflux family proteinF:cation transmembrane transporter activity;P:cation transport;C:membrane;BOFPAMO.I.C.G.H.G.
76.499.9118.4At3g47510823905unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
71.699.9147.8At3g29970822700germination protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
71.399.981.3At4g31330829260unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPOO.I.C.G.H.G.
71.399.944.3At1g54300841871unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
68.899.9441.7At4g33720829514pathogenesis-related protein, putativeF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOBO.I.C.G.H.G.
68.199.9205.0At1g76930844028ATEXT4 (EXTENSIN 4)Encodes an Arabidopsis extensin gene that belongs to cell-wall hydroxyproline-rich glycoproteins. The cross-link of extensins enforces cell wall strength. Transgenic plants overexpressing this gene show an increase in stem thickness.O.I.C.G.H.G.
67.299.8412.8At3g12500820429ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses.O.I.C.G.H.G.
65.399.847.7At3g57510824918ADPG1Encodes ADPG1, a polygalacturonase protein involved in silique and anther dihiscence. Loss of function mutations have reduced seed set, indehiscent fruit and reduced pollen shedding.O.I.C.G.H.G.
63.599.832.3At1g13600837921AtbZIP58 (Arabidopsis thaliana basic leucine-zipper 58)F:transcription factor activity, protein heterodimerization activity, protein homodimerization activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;POMFBO.I.C.G.H.G.
57.899.854.3At1g12320837786unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
56.599.834.9At3g13730820582CYP90D1Encodes a cytochrome P-450 gene that is involved in brassinosteroid biosynthesis, most likely in the conversion step of teasterone (TE) to 3-dehydroteasterone (3DT), and/or 6-deoxoteasterone (6-deoxoTE) to 6-deoxo-3-dehydroteasterone (6-deoxo3DT); or the conversion of cathasterone (CT) to TE, and/or 6-deoxocathasterone (6-deoxoCT) to 6-deoxoTE. Recently, CYP90D1 was shown to catalyse the C-23 hydroxylation of several brassinosteroids (the enzyme has a broad specificity for 22-hydroxylated substrates). Member of the CYP90C CYP450 family. Similar to Cytochrome P450 90C1 (ROT3).O.I.C.G.H.G.
56.499.863.5At1g23120838920major latex protein-related / MLP-relatedF:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;PO.I.C.G.H.G.
52.199.865.3At1g28100839703unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBFOO.I.C.G.H.G.
51.799.891.1At5g24090832474acidic endochitinase (CHIB1)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFBMOO.I.C.G.H.G.
49.399.8173.6At5g25770832646unknown proteinF:unknown;P:biological_process unknown;C:unknown;BOAFPO.I.C.G.H.G.
48.899.852.6At1g21890838791nodulin MtN21 family proteinF:unknown;P:unknown;C:membrane;BPOAMO.I.C.G.H.G.
47.999.887.4At1g60680842362aldo/keto reductase family proteinF:oxidoreductase activity, aldo-keto reductase activity;P:oxidation reduction;C:unknown;BOMFPAO.I.C.G.H.G.
46.899.882.6At3g14280820648unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
46.199.8120.5At5g13330831174Rap2.6L (related to AP2 6L)encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.O.I.C.G.H.G.
45.699.827.4At4g37970829953CAD6 (CINNAMYL ALCOHOL DEHYDROGENASE 6)F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:cellular_component unknown;BOPFMAVO.I.C.G.H.G.
44.699.8538.5At4g11650826770ATOSM34 (osmotin 34)osmotin-like proteinO.I.C.G.H.G.
44.599.8154.5At1g66690842987S-adenosyl-L-methionine:carboxyl methyltransferase family proteinF:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:cellular_component unknown;POBMFO.I.C.G.H.G.
44.499.817.9At4g13480826980AtMYB79 (myb domain protein 79)Member of the R2R3 factor gene family.O.I.C.G.H.G.
43.299.8175.9At1g14890838054enzyme inhibitor/ pectinesterase/ pectinesterase inhibitorF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
42.299.8377.8At4g16260827320catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compoundsF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:response to salt stress;C:cell wall, plasma membrane;POO.I.C.G.H.G.
41.699.898.7At1g49570841381peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBO.I.C.G.H.G.
41.499.8127.6At5g42600834267MRN1 (MARNERAL SYNTHASE)Encodes an oxidosqualene synthase that produces the monocyclic triterpene marneral.O.I.C.G.H.G.
41.299.826.4At4g15330827199CYP705A1a member of the cytochrome P450 familyO.I.C.G.H.G.
41.099.849.2At2g24260816961basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOO.I.C.G.H.G.
40.199.865.1At2g40970818697myb family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POO.I.C.G.H.G.
36.999.718.2At2g37440818321endonuclease/exonuclease/phosphatase family proteinF:hydrolase activity, inositol or phosphatidylinositol phosphatase activity;P:biological_process unknown;C:unknown;MPFOO.I.C.G.H.G.
36.599.775.7At1g72830843614NF-YA3 (NUCLEAR FACTOR Y, SUBUNIT A3)Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues.O.I.C.G.H.G.
36.299.741.5At3g25710822159BHLH32 (BASIC HELIX-LOOP-HELIX 32)F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOO.I.C.G.H.G.
35.999.756.5At3g19660821503unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
35.999.755.0At2g25790817121leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;PMOBFAVO.I.C.G.H.G.
35.399.7329.3At3g18280821356protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
34.299.791.8At4g34600829612unknown proteinF:molecular_function unknown;P:unknown;C:endomembrane system;PO.I.C.G.H.G.
34.299.737.4At2g41780818777unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
33.999.7131.2At4g33550829494lipid bindingF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
33.999.747.9At3g48510824010unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
33.999.712.8At1g27620839654transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFBO.I.C.G.H.G.
33.699.773.8At1g01640839534speckle-type POZ protein-relatedF:protein binding;P:biological_process unknown;C:cellular_component unknown;MPOVFO.I.C.G.H.G.
33.499.760.3At3g01970821270WRKY45member of WRKY Transcription Factor; Group IO.I.C.G.H.G.
33.299.7117.1At1g17020838272SRG1 (SENESCENCE-RELATED GENE 1)Encodes a novel member of the Fe(II)/ascorbate oxidase gene family; senescence-related gene.O.I.C.G.H.G.
33.299.725.8At5g38280833810PR5Kputative receptor serine/threonine kinase PR5K (PR5K) mRNA, PR5-like receptor kinaseO.I.C.G.H.G.
32.899.734.6At1g65510842863unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:endomembrane system;PO.I.C.G.H.G.
32.399.778.7At3g08040819995FRD3 (FERRIC REDUCTASE DEFECTIVE 3)Encodes a member of the MATE (multidrug and toxin efflux family), expressed in roots but not shoots. Mutants accumulate excess iron, manganese and zinc, and express root Fe(III) chelatase activity even under iron sufficiency conditions. FRD3 is likely to function in root xylem loading of an iron chelator or other factor necessary for efficient iron uptake out of the xylem or apoplastic space and into leaf cells.O.I.C.G.H.G.
31.999.780.3At5g06720830561peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOMVO.I.C.G.H.G.
31.899.769.5At5g24030832468SLAH3 (SLAC1 HOMOLOGUE 3)Encodes a protein with ten predicted transmembrane helices. The SLAH3 protein has similarity to the SLAC1 protein involved in ion homeostasis in guard cells. Although it is not expressed in guard cells, it can complement an slac1-2 mutant suggesting that it performs a similar function. SLAH3:GFP localizes to the plasma membrane.O.I.C.G.H.G.
31.499.743.6At4g24000828500ATCSLG2encodes a protein similar to cellulose synthaseO.I.C.G.H.G.
31.399.710.9At1g08080837326ACA7 (ALPHA CARBONIC ANHYDRASE 7)F:carbonate dehydratase activity, zinc ion binding;P:one-carbon compound metabolic process;C:endomembrane system;MBPOFVO.I.C.G.H.G.
31.199.762.6At1g01070839550nodulin MtN21 family proteinF:unknown;P:unknown;C:membrane;BPOAFMO.I.C.G.H.G.
30.799.7102.4At5g39110833904germin-like protein, putativeF:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOO.I.C.G.H.G.
30.799.788.1At1g20160838606ATSBT5.2F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast;BPOFMAO.I.C.G.H.G.
30.299.752.7At3g14610820689CYP72A7putative cytochrome P450O.I.C.G.H.G.
30.299.738.5At3g12090820383TET6 (TETRASPANIN6)Member of TETRASPANIN familyO.I.C.G.H.G.
29.799.7286.2At2g43510818952ATTI1Member of the defensin-like (DEFL) family. Encodes putative trypsin inhibitor protein which may function in defense against herbivory.O.I.C.G.H.G.
29.299.7332.3At4g15910827273ATDI21 (ARABIDOPSIS THALIANA DROUGHT-INDUCED 21)encodes a gene whose transcript level in root and leaves increases to progressive drought stress. The transcript level is also affected by changes of endogenous or exogenous abscisic acid level. It appears to be a member of plant-specific gene family that includes late embryo-abundant and zinc- IAA-induced proteins in other plants.O.I.C.G.H.G.
29.099.794.2At4g35480829700RHA3BEncodes a putative RING-H2 finger protein RHA3b.O.I.C.G.H.G.
28.599.7197.6At5g66170836749-F:molecular_function unknown;P:aging;C:cellular_component unknown;PBOAO.I.C.G.H.G.
28.599.7129.4At2g22860816817ATPSK2 (PHYTOSULFOKINE 2 PRECURSOR)Phytosulfokine 2 precursor, coding for a unique plant peptide growth factor.O.I.C.G.H.G.
28.099.7193.1At3g60140825184DIN2 (DARK INDUCIBLE 2)Encodes a protein similar to beta-glucosidase and is a member of glycoside hydrolase family 1. Expression is induced after 24 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell.O.I.C.G.H.G.
28.099.7137.7At4g33420829479peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:unknown;PFOBMO.I.C.G.H.G.
27.899.7138.9At1g12200837773flavin-containing monooxygenase family protein / FMO family proteinF:NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.
27.699.741.8At5g05860830471UGT76C2F:in 6 functions;P:metabolic process;C:unknown;PMBVOFO.I.C.G.H.G.
27.499.744.3At5g42200834225zinc finger (C3HC4-type RING finger) family proteinF:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVO.I.C.G.H.G.
27.399.764.8At4g02590828126UNE12 (unfertilized embryo sac 12)F:transcription factor activity, DNA binding;P:double fertilization forming a zygote and endosperm, regulation of transcription;C:nucleus;PMFO.I.C.G.H.G.
27.399.744.3At5g05160830398leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cell wall, plasma membrane;PMOBFVAO.I.C.G.H.G.
27.299.744.5At1g06840837196leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane, membrane;MPOBFVAO.I.C.G.H.G.
27.299.742.3At2g34650818030PID (PINOID)Encodes a protein serine/threonine kinase that may act as a positive regulator of cellular auxin efflux, as a a binary switch for PIN polarity, and as a negative regulator of auxin signaling. Recessive mutants exhibit similar phenotypes as pin-formed mutants in flowers and inflorescence but distinct phenotypes in cotyledons and leaves. Expressed in the vascular tissue proximal to root and shoot meristems, shoot apex, and embryos. Expression is induced by auxin. Overexpression of the gene results in phenotypes in the root and shoot similar to those found in auxin-insensitive mutants. The protein physically interacts with TCH3 (TOUCH3) and PID-BINDING PROTEIN 1 (PBP1), a previously uncharacterized protein containing putative EF-hand calcium-binding motifs. Acts together with ENP (ENHANCER OF PINOID) to instruct precursor cells to elaborate cotyledons in the transition stage embryo. Interacts with PDK1. PID autophosphorylation is required for the ability of PID to phosphorylate an exogenous substrate. PID activation loop is required for PDK1-dependent PID phosphorylation and requires the PIF domain. Negative regulator of root hair growth. PID kinase activity is critical for the inhibition of root hair growth and for maintaining the proper subcellular localization of PID.O.I.C.G.H.G.
26.799.725.1At2g18600816375RUB1-conjugating enzyme, putativeF:ubiquitin-protein ligase activity, small conjugating protein ligase activity, acid-amino acid ligase activity, ATP binding;P:regulation of protein metabolic process, protein modification process, post-translational protein modification;C:cellular_component unknown;MFOPVO.I.C.G.H.G.
26.599.710.3At5g66630836795DAR5 (DA1-RELATED PROTEIN 5)F:zinc ion binding;P:unknown;C:unknown;PMOBFO.I.C.G.H.G.
26.399.7124.2At1g60960842387IRT3member of Fe(II) transporter isolog familyO.I.C.G.H.G.
26.199.7116.8At3g61990825372O-methyltransferase family 3 proteinF:O-methyltransferase activity;P:unknown;C:cytosol;BOPMFAO.I.C.G.H.G.
25.799.735.7At1g17590838335NF-YA8 (NUCLEAR FACTOR Y, SUBUNIT A8)F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:CCAAT-binding factor complex, nucleus, chloroplast;PMFOBO.I.C.G.H.G.
25.699.771.8At2g29490817498ATGSTU1 (GLUTATHIONE S-TRANSFERASE TAU 1)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
25.599.752.1At1g05710837078ethylene-responsive protein, putativeF:transcription factor activity;P:response to ethylene stimulus, regulation of transcription;C:nucleus;PO.I.C.G.H.G.
25.399.6110.5At3g54820824647PIP2F:water channel activity;P:transport;C:integral to membrane, membrane;BPMOFAVO.I.C.G.H.G.
25.099.640.8At1g14040837965-F:unknown;P:unknown;C:integral to membrane;FMPOO.I.C.G.H.G.
24.899.637.2At3g26460822251major latex protein-related / MLP-relatedF:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;PO.I.C.G.H.G.
24.799.636.9At3g15300820761VQ motif-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMO.I.C.G.H.G.
24.599.654.2At3g63010825476GID1B (GA INSENSITIVE DWARF1B)Encodes a gibberellin (GA) receptor ortholog of the rice GA receptor gene (OsGID1). Has GA-binding activity, showing higher affinity to GA4. Interacts with DELLA proteins in vivo in the presence of GA4.O.I.C.G.H.G.



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