CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID -

Assay name E-ATMX-31-raw-cel-1516947916

GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
1321.3 100.0 129.1 At3g50610 824224 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFB O.I. C.G. H.G.
494.1 100.0 69.3 At5g11940 831067 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM O.I. C.G. H.G.
483.5 100.0 36.1 At2g34210 817982 structural constituent of ribosome / transcription elongation regulator/ transcription initiation factor F:transcription elongation regulator activity, structural constituent of ribosome, transcription initiation factor activity;P:regulation of transcription from RNA polymerase II promoter, translation, positive regulation of RNA elongation from RNA polymerase II promoter;C:ribosome, intracellular;MOFAPBV O.I. C.G. H.G.
414.6 100.0 139.1 At1g09180 837438 ATSARA1A (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 1) A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases. O.I. C.G. H.G.
403.3 100.0 323.7 At5g50790 835151 nodulin MtN3 family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, integral to membrane, membrane;PMOB O.I. C.G. H.G.
350.8 100.0 463.4 At1g69880 843324 ATH8 (thioredoxin H-type 8) F:unknown;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;BOMPFAV O.I. C.G. H.G.
340.9 100.0 65.5 At1g52470 841678 hydrolase F:hydrolase activity;P:biological_process unknown;C:cellular_component unknown;PMO O.I. C.G. H.G.
331.6 100.0 229.3 At2g46880 819301 PAP14 (PURPLE ACID PHOSPHATASE 14) F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:unknown;C:endomembrane system;FBPO O.I. C.G. H.G.
327.1 100.0 140.9 At1g52940 841727 PAP5 (PURPLE ACID PHOSPHATASE 5) F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:cellular_component unknown;PBOMFA O.I. C.G. H.G.
307.6 100.0 64.6 At1g07880 837303 ATMPK13 member of MAP Kinase O.I. C.G. H.G.
301.0 100.0 314.4 At5g22460 832307 esterase/lipase/thioesterase family protein F:catalytic activity;P:biological_process unknown;C:cell wall, vacuole, plant-type cell wall;BPOF O.I. C.G. H.G.
295.5 100.0 287.9 At2g44460 819053 BGLU28 (BETA GLUCOSIDASE 28) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:membrane;BOPMFA O.I. C.G. H.G.
278.3 100.0 108.4 At2g44690 819077 ARAC9 A member of ROP GTPase gene family. O.I. C.G. H.G.
271.3 100.0 283.8 At2g11810 815657 MGDC MGD3 is the major enzyme for galactolipid metabolism during phosphate starvation. Does not contribute to galactolipid synthesis under P1-sufficient conditions. O.I. C.G. H.G.
251.0 100.0 433.0 At2g04040 814938 TX1 AtDTX1 (At2g04040) has been identified as a detoxifying efflux carrier for plant-derived antibiotics and other toxic compounds, including CD2+. O.I. C.G. H.G.
242.3 100.0 125.3 At1g08310 837351 esterase/lipase/thioesterase family protein F:catalytic activity;P:biological_process unknown;C:unknown;BPOMFA O.I. C.G. H.G.
220.0 100.0 51.6 At3g44520 - - O.I. C.G. H.G.
218.9 100.0 58.3 At3g43110 823370 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
215.9 100.0 51.4 At2g27120 817254 TIL2 (TILTED 2) Encodes a protein with similarity to DNA polymerase epsilon catalytic subunit. Based on yeast two hybrid analysis, not predicted to be a subunit of the DNA polymerase epsilon complex. No phenotype observed in homozygous mutant embryos or plants but in combination with TIL1-1/til1-1 heterozygotes arrest earlier than til1 homozygotes suggesting TIL2 functions redundantly with TIL1. O.I. C.G. H.G.
210.1 100.0 154.1 At5g18690 831987 AGP25 (ARABINOGALACTAN PROTEINS 25) F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PMOVFB O.I. C.G. H.G.
198.5 100.0 96.2 At1g09080 837429 BIP3 F:ATP binding;P:protein folding, response to heat;C:endoplasmic reticulum lumen;OBMFPVA O.I. C.G. H.G.
172.3 100.0 382.9 At1g17710 838347 phosphatase F:phosphatase activity;P:metabolic process;C:unknown;MPOBF O.I. C.G. H.G.
170.6 100.0 81.5 At1g19200 838503 senescence-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
160.5 99.9 78.7 At1g45180 841086 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB O.I. C.G. H.G.
157.9 99.9 82.1 At3g22930 821865 calmodulin, putative F:calcium ion binding;P:biological_process unknown;C:unknown;MOFPBV O.I. C.G. H.G.
153.2 99.9 49.7 At3g44510 823576 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB O.I. C.G. H.G.
152.1 99.9 80.7 At2g19850 816504 - F:molecular_function unknown;P:biological_process unknown;C:unknown;PMVO O.I. C.G. H.G.
144.3 99.9 451.3 At5g24660 832538 LSU2 (RESPONSE TO LOW SULFUR 2) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
144.1 99.9 352.0 At2g27190 817261 PAP12 (PURPLE ACID PHOSPHATASE 12) secreted purple acid phosphatase precursor O.I. C.G. H.G.
144.0 99.9 41.5 At1g36920 840600 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO O.I. C.G. H.G.
143.8 99.9 354.9 At2g27970 817341 CKS2 (CDK-subunit 2) F:cyclin-dependent protein kinase regulator activity, cyclin-dependent protein kinase activity;P:cell cycle;C:cellular_component unknown;MFOP O.I. C.G. H.G.
139.5 99.9 144.9 At2g45130 819120 SPX3 (SPX DOMAIN GENE 3) F:molecular_function unknown;P:cellular response to phosphate starvation, positive regulation of cellular response to phosphate starvation;C:cellular_component unknown;FMPO O.I. C.G. H.G.
134.9 99.9 51.5 At2g43140 818916 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOBF O.I. C.G. H.G.
134.3 99.9 264.2 At2g28510 817399 Dof-type zinc finger domain-containing protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleolus;POMFB O.I. C.G. H.G.
133.2 99.9 144.1 At2g15760 816070 calmodulin-binding protein F:calmodulin binding;P:biological_process unknown;C:plasma membrane;P O.I. C.G. H.G.
132.3 99.9 291.1 At3g53620 824530 AtPPa4 (Arabidopsis thaliana pyrophosphorylase 4) Encodes a soluble protein with inorganic pyrophosphatase activity that is highly specific for Mg-inorganic pyrophosphate. O.I. C.G. H.G.
126.6 99.9 403.8 At2g44450 819052 BGLU15 (BETA GLUCOSIDASE 15) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plant-type cell wall;BOPMFA O.I. C.G. H.G.
119.7 99.9 65.6 At3g05630 819730 PLDP2 Encodes a member of the PXPH-PLD subfamily of phospholipase D proteins. Regulates vesicle trafficking. Required for auxin transport and distribution and hence auxin responses. This subfamily is novel structurally different from the majority of plant PLDs by having phox homology (PX) and pleckstrin homology (PH) domains. Involved regulating root development in response to nutrient limitation. Plays a major role in phosphatidic acid production during phosphate deprivation. Induced upon Pi starvation in both shoots and roots. Involved in hydrolyzing phosphatidylcholine and phosphatidylethanolamine to produce diacylglycerol for digalactosyldiacylglycerol synthesis and free Pi to sustain other Pi-requiring processes. Does not appear to be involved in root hair patterning. O.I. C.G. H.G.
117.4 99.9 59.4 At3g16330 820880 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
114.9 99.9 18.2 At4g21730 3770093 - pseudogene of N-ethylmaleimide sensitive factor (NSF) O.I. C.G. H.G.
114.6 99.9 87.7 At1g66040 842917 VIM4 (VARIANT IN METHYLATION 4) predicted to encode a protein with an N-terminal PHD domain and two RING domains surrounding an SRA domain. Attempts to isolate ORTH4/VIM4 cDNA through RT-PCR were unsuccessful and analysis of the expression of this gene is difficult since it shares 99% nucleotide identity with ORTH5/VIM2. O.I. C.G. H.G.
114.5 99.9 203.2 At2g27960 817340 CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1) catalytic subunit of cyclin dependent kinase 1. physically interact with cyclin-dependent kinases (CDKs) and play an essential, but yet not entirely resolved, role in the regulation of the cell cycle O.I. C.G. H.G.
107.2 99.9 131.2 At3g53540 824522 unknown protein F:unknown;P:unknown;C:plasma membrane;OMBFPAV O.I. C.G. H.G.
105.7 99.9 80.4 At1g15170 838083 MATE efflux family protein F:drug transporter activity, antiporter activity, transporter activity;P:multidrug transport;C:chloroplast, membrane;BOPFMA O.I. C.G. H.G.
104.8 99.9 55.0 At5g47250 834772 disease resistance protein (CC-NBS-LRR class), putative F:protein binding, ATP binding;P:defense response, apoptosis;C:mitochondrion;PMBOFA O.I. C.G. H.G.
101.9 99.9 92.4 At1g23140 838922 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPFO O.I. C.G. H.G.
100.6 99.9 50.4 At1g22090 838814 emb2204 (embryo defective 2204) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;P O.I. C.G. H.G.
98.7 99.9 44.0 At1g44060 3767336 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
96.2 99.9 20.9 At2g16960 816199 importin beta-2 subunit family protein F:protein transporter activity, binding;P:biological_process unknown;C:cellular_component unknown;MFOP O.I. C.G. H.G.
92.8 99.9 203.3 At1g45976 841106 SBP1 (s-ribonuclease binding protein 1) F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOVFB O.I. C.G. H.G.
92.7 99.9 47.3 At5g66110 836743 metal ion binding F:metal ion binding;P:metal ion transport;C:plasma membrane;PFM O.I. C.G. H.G.
89.7 99.9 185.5 At5g17340 831600 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
88.7 99.9 143.8 At1g44110 841014 CYCA1 F:cyclin-dependent protein kinase regulator activity;P:response to cyclopentenone, regulation of cell cycle;C:nucleus;MPOFVB O.I. C.G. H.G.
88.3 99.9 15.4 At5g17970 831664 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;POBMFAV O.I. C.G. H.G.
86.7 99.9 44.2 At1g44780 841042 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA O.I. C.G. H.G.
85.5 99.9 57.7 At5g50130 835078 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
85.0 99.9 38.5 At1g45150 841083 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOP O.I. C.G. H.G.
84.8 99.9 150.6 At2g17280 816234 phosphoglycerate/bisphosphoglycerate mutase family protein F:catalytic activity;P:metabolic process;C:cellular_component unknown;FOPB O.I. C.G. H.G.
83.9 99.9 104.9 At1g44900 841056 ATP binding / DNA binding / DNA-dependent ATPase F:DNA-dependent ATPase activity, DNA binding, ATP binding;P:DNA replication, DNA replication initiation;C:nucleus, chloroplast;MOBFPAV O.I. C.G. H.G.
82.3 99.9 51.4 At3g54610 824626 GCN5 Encodes a histone acetyltransferase that is plays a role in the determination of the embryonic root-shoot axis. It is also required to regulate the floral meristem activity by modulating the extent of expression of WUS and AG. In other eukaryotes, this protein is recruited to specific promoters by DNA binding transcription factors and is thought to promote transcription by acetylating the N-terminal tail of histone H3. The enzyme has indeed been shown to catalyse primarily the acetylation of H3 histone with only traces of H4 and H2A/B being acetylated. Non-acetylated H3 peptide or an H3 peptide that had been previously acetylated on K9 both serve as excellent substrates for HAG1-catalyzed acetylation. However, prior acetylation of H3 lysine 14 blocks radioactive acetylation of the peptide by HAG1. HAG1 is specific for histone H3 lysine 14. O.I. C.G. H.G.
81.4 99.9 67.0 At5g39720 833968 AIG2L (AVIRULENCE INDUCED GENE 2 LIKE PROTEIN) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOFA O.I. C.G. H.G.
81.3 99.9 60.4 At3g52310 824396 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:plasma membrane;BOMFAPV O.I. C.G. H.G.
80.9 99.9 80.3 At5g24655 832537 LSU4 (RESPONSE TO LOW SULFUR 4) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
80.7 99.9 105.2 At2g03800 814906 GEK1 (GEKO1) encodes a D-aminoacyl-tRNA deacylase. Involved in detoxification of D-aminoacyl-tRNA. Mutants also show ethanol-hypersensitive phenotype. O.I. C.G. H.G.
80.3 99.9 162.4 At3g53610 824529 ATRAB8 GTPase AtRAB8 (atrab8) O.I. C.G. H.G.
79.3 99.9 155.6 At3g29970 822700 germination protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
78.8 99.9 129.6 At2g07708 815383 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
78.5 99.9 235.8 At1g43800 840977 acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative F:acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding;P:fatty acid metabolic process, fatty acid biosynthetic process;C:membrane;PBOM O.I. C.G. H.G.
77.5 99.9 80.7 At2g25790 817121 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;PMOBFAV O.I. C.G. H.G.
77.1 99.9 39.2 At1g69080 843240 universal stress protein (USP) family protein F:molecular_function unknown;P:response to stress;C:unknown;PM O.I. C.G. H.G.
77.0 99.9 32.2 At2g16450 816143 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
74.5 99.9 329.9 At2g07783 3768188 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
74.3 99.9 106.6 At5g25270 832599 - F:molecular_function unknown;P:protein modification process;C:cellular_component unknown;OMBFVP O.I. C.G. H.G.
73.3 99.9 81.2 At3g54030 824570 protein kinase family protein F:protein tyrosine kinase activity, binding, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;PMBOFVA O.I. C.G. H.G.
72.9 99.9 47.3 At1g33460 3766895 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
72.2 99.9 55.9 At5g25070 832578 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV O.I. C.G. H.G.
70.6 99.9 94.4 At2g44830 819092 protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane, nucleus;MOPFBVA O.I. C.G. H.G.
69.9 99.9 138.5 At4g36350 829787 PAP25 (PURPLE ACID PHOSPHATASE 25) F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:cell wall;PBOMFA O.I. C.G. H.G.
68.3 99.9 19.4 At1g45100 841077 polyadenylate-binding protein, putative / PABP, putative F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MFPOB O.I. C.G. H.G.
68.1 99.9 255.8 At3g02040 821175 SRG3 (senescence-related gene 3) F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:unknown;BMOFPAV O.I. C.G. H.G.
67.8 99.9 108.4 At1g33940 840291 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO O.I. C.G. H.G.
66.8 99.8 266.2 At1g73010 843632 phosphatase F:phosphatase activity;P:metabolic process;C:cellular_component unknown;MPOBF O.I. C.G. H.G.
66.7 99.8 89.3 At2g03780 814905 translin family protein F:sequence-specific DNA binding, DNA binding;P:biological_process unknown;C:unknown;MFAOP O.I. C.G. H.G.
65.7 99.8 114.7 At2g47260 819339 WRKY23 member of WRKY Transcription Factor; Group I O.I. C.G. H.G.
65.4 99.8 76.3 At5g25240 832595 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
65.0 99.8 38.6 At5g61120 836233 - F:unknown;P:biological_process unknown;C:unknown;PMO O.I. C.G. H.G.
64.7 99.8 73.8 At5g25080 832579 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO O.I. C.G. H.G.
64.1 99.8 39.8 At3g15990 820844 SULTR3 Encodes sulfate transporter Sultr3;4. O.I. C.G. H.G.
63.4 99.8 174.7 At3g52190 824384 PHF1 (PHOSPHATE TRANSPORTER TRAFFIC FACILITATOR1) Encodes a plant specific protein structurally related to the SEC12 proteins of the early secretory pathway. Mutation of PHF1 impairs Pi transport. Expression was detected in all tissues, and was induced by Pi starvation. Localized in endoplasmic reticulum (ER), and mutation of PHF1 resulted in ER retention and reduced accumulation of the plasma membrane PHT1;1 transporter. O.I. C.G. H.G.
63.3 99.8 258.3 At1g45688 841102 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PVFBMO O.I. C.G. H.G.
62.8 99.8 92.7 At4g33560 829495 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
62.1 99.8 353.7 At3g17790 821047 PAP17 F:phosphatase activity, protein serine/threonine phosphatase activity, acid phosphatase activity;P:response to hydrogen peroxide, cellular phosphate ion homeostasis;C:cell surface;MOBPFA O.I. C.G. H.G.
62.0 99.8 64.5 At1g71130 843453 AP2 domain-containing transcription factor, putative encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. O.I. C.G. H.G.
61.9 99.8 127.5 At2g02570 814787 nucleic acid binding F:nucleic acid binding;P:unknown;C:unknown;MFOPB O.I. C.G. H.G.
61.1 99.8 304.6 At5g20150 832137 SPX1 (SPX DOMAIN GENE 1) F:molecular_function unknown;P:cellular response to phosphate starvation, positive regulation of cellular response to phosphate starvation;C:nucleus;FMPOBA O.I. C.G. H.G.
60.8 99.8 163.6 At2g07360 815305 SH3 domain-containing protein F:binding;P:unknown;C:cytosol, nucleus, plasma membrane, membrane;OPMFB O.I. C.G. H.G.
59.6 99.8 15.5 At5g66630 836795 DAR5 (DA1-RELATED PROTEIN 5) F:zinc ion binding;P:unknown;C:unknown;PMOBF O.I. C.G. H.G.
59.5 99.8 50.8 At1g63650 842669 EGL3 (ENHANCER OF GLABRA 3) Mutant has reduced trichomes, anthocyanin, and seed coat mucilage and abnormally patterned stomates. Encodes a bHLH Transcription Factor 1. The protein is functionally redundant with GL3 and TT8 and interacts with TTG1, the myb proteins GL1, PAP1 and 2, CPC and TRY, and it will form heterodimers with GL3. Expression in N (non-hair cell forming) cell layers is negatively regulated by WER. Expression in H cells (hair cell forming) is promoted by CPC/TRY. O.I. C.G. H.G.
57.6 99.8 65.5 At1g45170 841085 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
56.9 99.8 46.2 At2g02680 814797 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:intracellular;PMOF O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
1321.3	100.0	129.1	At3g50610	824224	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFB	O.I.	C.G.	H.G.
494.1	100.0	69.3	At5g11940	831067	subtilase family protein	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM	O.I.	C.G.	H.G.
483.5	100.0	36.1	At2g34210	817982	structural constituent of ribosome / transcription elongation regulator/ transcription initiation factor	F:transcription elongation regulator activity, structural constituent of ribosome, transcription initiation factor activity;P:regulation of transcription from RNA polymerase II promoter, translation, positive regulation of RNA elongation from RNA polymerase II promoter;C:ribosome, intracellular;MOFAPBV	O.I.	C.G.	H.G.
414.6	100.0	139.1	At1g09180	837438	ATSARA1A (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 1)	A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases.	O.I.	C.G.	H.G.
403.3	100.0	323.7	At5g50790	835151	nodulin MtN3 family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, integral to membrane, membrane;PMOB	O.I.	C.G.	H.G.
350.8	100.0	463.4	At1g69880	843324	ATH8 (thioredoxin H-type 8)	F:unknown;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;BOMPFAV	O.I.	C.G.	H.G.
340.9	100.0	65.5	At1g52470	841678	hydrolase	F:hydrolase activity;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
331.6	100.0	229.3	At2g46880	819301	PAP14 (PURPLE ACID PHOSPHATASE 14)	F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:unknown;C:endomembrane system;FBPO	O.I.	C.G.	H.G.
327.1	100.0	140.9	At1g52940	841727	PAP5 (PURPLE ACID PHOSPHATASE 5)	F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:cellular_component unknown;PBOMFA	O.I.	C.G.	H.G.
307.6	100.0	64.6	At1g07880	837303	ATMPK13	member of MAP Kinase	O.I.	C.G.	H.G.
301.0	100.0	314.4	At5g22460	832307	esterase/lipase/thioesterase family protein	F:catalytic activity;P:biological_process unknown;C:cell wall, vacuole, plant-type cell wall;BPOF	O.I.	C.G.	H.G.
295.5	100.0	287.9	At2g44460	819053	BGLU28 (BETA GLUCOSIDASE 28)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:membrane;BOPMFA	O.I.	C.G.	H.G.
278.3	100.0	108.4	At2g44690	819077	ARAC9	A member of ROP GTPase gene family.	O.I.	C.G.	H.G.
271.3	100.0	283.8	At2g11810	815657	MGDC	MGD3 is the major enzyme for galactolipid metabolism during phosphate starvation. Does not contribute to galactolipid synthesis under P1-sufficient conditions.	O.I.	C.G.	H.G.
251.0	100.0	433.0	At2g04040	814938	TX1	AtDTX1 (At2g04040) has been identified as a detoxifying efflux carrier for plant-derived antibiotics and other toxic compounds, including CD2+.	O.I.	C.G.	H.G.
242.3	100.0	125.3	At1g08310	837351	esterase/lipase/thioesterase family protein	F:catalytic activity;P:biological_process unknown;C:unknown;BPOMFA	O.I.	C.G.	H.G.
220.0	100.0	51.6	At3g44520		-	-	O.I.	C.G.	H.G.
218.9	100.0	58.3	At3g43110	823370	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
215.9	100.0	51.4	At2g27120	817254	TIL2 (TILTED 2)	Encodes a protein with similarity to DNA polymerase epsilon catalytic subunit. Based on yeast two hybrid analysis, not predicted to be a subunit of the DNA polymerase epsilon complex. No phenotype observed in homozygous mutant embryos or plants but in combination with TIL1-1/til1-1 heterozygotes arrest earlier than til1 homozygotes suggesting TIL2 functions redundantly with TIL1.	O.I.	C.G.	H.G.
210.1	100.0	154.1	At5g18690	831987	AGP25 (ARABINOGALACTAN PROTEINS 25)	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PMOVFB	O.I.	C.G.	H.G.
198.5	100.0	96.2	At1g09080	837429	BIP3	F:ATP binding;P:protein folding, response to heat;C:endoplasmic reticulum lumen;OBMFPVA	O.I.	C.G.	H.G.
172.3	100.0	382.9	At1g17710	838347	phosphatase	F:phosphatase activity;P:metabolic process;C:unknown;MPOBF	O.I.	C.G.	H.G.
170.6	100.0	81.5	At1g19200	838503	senescence-associated protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
160.5	99.9	78.7	At1g45180	841086	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB	O.I.	C.G.	H.G.
157.9	99.9	82.1	At3g22930	821865	calmodulin, putative	F:calcium ion binding;P:biological_process unknown;C:unknown;MOFPBV	O.I.	C.G.	H.G.
153.2	99.9	49.7	At3g44510	823576	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB	O.I.	C.G.	H.G.
152.1	99.9	80.7	At2g19850	816504	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;PMVO	O.I.	C.G.	H.G.
144.3	99.9	451.3	At5g24660	832538	LSU2 (RESPONSE TO LOW SULFUR 2)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
144.1	99.9	352.0	At2g27190	817261	PAP12 (PURPLE ACID PHOSPHATASE 12)	secreted purple acid phosphatase precursor	O.I.	C.G.	H.G.
144.0	99.9	41.5	At1g36920	840600	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO	O.I.	C.G.	H.G.
143.8	99.9	354.9	At2g27970	817341	CKS2 (CDK-subunit 2)	F:cyclin-dependent protein kinase regulator activity, cyclin-dependent protein kinase activity;P:cell cycle;C:cellular_component unknown;MFOP	O.I.	C.G.	H.G.
139.5	99.9	144.9	At2g45130	819120	SPX3 (SPX DOMAIN GENE 3)	F:molecular_function unknown;P:cellular response to phosphate starvation, positive regulation of cellular response to phosphate starvation;C:cellular_component unknown;FMPO	O.I.	C.G.	H.G.
134.9	99.9	51.5	At2g43140	818916	DNA binding / transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOBF	O.I.	C.G.	H.G.
134.3	99.9	264.2	At2g28510	817399	Dof-type zinc finger domain-containing protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleolus;POMFB	O.I.	C.G.	H.G.
133.2	99.9	144.1	At2g15760	816070	calmodulin-binding protein	F:calmodulin binding;P:biological_process unknown;C:plasma membrane;P	O.I.	C.G.	H.G.
132.3	99.9	291.1	At3g53620	824530	AtPPa4 (Arabidopsis thaliana pyrophosphorylase 4)	Encodes a soluble protein with inorganic pyrophosphatase activity that is highly specific for Mg-inorganic pyrophosphate.	O.I.	C.G.	H.G.
126.6	99.9	403.8	At2g44450	819052	BGLU15 (BETA GLUCOSIDASE 15)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plant-type cell wall;BOPMFA	O.I.	C.G.	H.G.
119.7	99.9	65.6	At3g05630	819730	PLDP2	Encodes a member of the PXPH-PLD subfamily of phospholipase D proteins. Regulates vesicle trafficking. Required for auxin transport and distribution and hence auxin responses. This subfamily is novel structurally different from the majority of plant PLDs by having phox homology (PX) and pleckstrin homology (PH) domains. Involved regulating root development in response to nutrient limitation. Plays a major role in phosphatidic acid production during phosphate deprivation. Induced upon Pi starvation in both shoots and roots. Involved in hydrolyzing phosphatidylcholine and phosphatidylethanolamine to produce diacylglycerol for digalactosyldiacylglycerol synthesis and free Pi to sustain other Pi-requiring processes. Does not appear to be involved in root hair patterning.	O.I.	C.G.	H.G.
117.4	99.9	59.4	At3g16330	820880	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
114.9	99.9	18.2	At4g21730	3770093	-	pseudogene of N-ethylmaleimide sensitive factor (NSF)	O.I.	C.G.	H.G.
114.6	99.9	87.7	At1g66040	842917	VIM4 (VARIANT IN METHYLATION 4)	predicted to encode a protein with an N-terminal PHD domain and two RING domains surrounding an SRA domain. Attempts to isolate ORTH4/VIM4 cDNA through RT-PCR were unsuccessful and analysis of the expression of this gene is difficult since it shares 99% nucleotide identity with ORTH5/VIM2.	O.I.	C.G.	H.G.
114.5	99.9	203.2	At2g27960	817340	CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1)	catalytic subunit of cyclin dependent kinase 1. physically interact with cyclin-dependent kinases (CDKs) and play an essential, but yet not entirely resolved, role in the regulation of the cell cycle	O.I.	C.G.	H.G.
107.2	99.9	131.2	At3g53540	824522	unknown protein	F:unknown;P:unknown;C:plasma membrane;OMBFPAV	O.I.	C.G.	H.G.
105.7	99.9	80.4	At1g15170	838083	MATE efflux family protein	F:drug transporter activity, antiporter activity, transporter activity;P:multidrug transport;C:chloroplast, membrane;BOPFMA	O.I.	C.G.	H.G.
104.8	99.9	55.0	At5g47250	834772	disease resistance protein (CC-NBS-LRR class), putative	F:protein binding, ATP binding;P:defense response, apoptosis;C:mitochondrion;PMBOFA	O.I.	C.G.	H.G.
101.9	99.9	92.4	At1g23140	838922	C2 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPFO	O.I.	C.G.	H.G.
100.6	99.9	50.4	At1g22090	838814	emb2204 (embryo defective 2204)	F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;P	O.I.	C.G.	H.G.
98.7	99.9	44.0	At1g44060	3767336	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
96.2	99.9	20.9	At2g16960	816199	importin beta-2 subunit family protein	F:protein transporter activity, binding;P:biological_process unknown;C:cellular_component unknown;MFOP	O.I.	C.G.	H.G.
92.8	99.9	203.3	At1g45976	841106	SBP1 (s-ribonuclease binding protein 1)	F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOVFB	O.I.	C.G.	H.G.
92.7	99.9	47.3	At5g66110	836743	metal ion binding	F:metal ion binding;P:metal ion transport;C:plasma membrane;PFM	O.I.	C.G.	H.G.
89.7	99.9	185.5	At5g17340	831600	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
88.7	99.9	143.8	At1g44110	841014	CYCA1	F:cyclin-dependent protein kinase regulator activity;P:response to cyclopentenone, regulation of cell cycle;C:nucleus;MPOFVB	O.I.	C.G.	H.G.
88.3	99.9	15.4	At5g17970	831664	disease resistance protein (TIR-NBS-LRR class), putative	F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;POBMFAV	O.I.	C.G.	H.G.
86.7	99.9	44.2	At1g44780	841042	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA	O.I.	C.G.	H.G.
85.5	99.9	57.7	At5g50130	835078	short-chain dehydrogenase/reductase (SDR) family protein	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
85.0	99.9	38.5	At1g45150	841083	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOP	O.I.	C.G.	H.G.
84.8	99.9	150.6	At2g17280	816234	phosphoglycerate/bisphosphoglycerate mutase family protein	F:catalytic activity;P:metabolic process;C:cellular_component unknown;FOPB	O.I.	C.G.	H.G.
83.9	99.9	104.9	At1g44900	841056	ATP binding / DNA binding / DNA-dependent ATPase	F:DNA-dependent ATPase activity, DNA binding, ATP binding;P:DNA replication, DNA replication initiation;C:nucleus, chloroplast;MOBFPAV	O.I.	C.G.	H.G.
82.3	99.9	51.4	At3g54610	824626	GCN5	Encodes a histone acetyltransferase that is plays a role in the determination of the embryonic root-shoot axis. It is also required to regulate the floral meristem activity by modulating the extent of expression of WUS and AG. In other eukaryotes, this protein is recruited to specific promoters by DNA binding transcription factors and is thought to promote transcription by acetylating the N-terminal tail of histone H3. The enzyme has indeed been shown to catalyse primarily the acetylation of H3 histone with only traces of H4 and H2A/B being acetylated. Non-acetylated H3 peptide or an H3 peptide that had been previously acetylated on K9 both serve as excellent substrates for HAG1-catalyzed acetylation. However, prior acetylation of H3 lysine 14 blocks radioactive acetylation of the peptide by HAG1. HAG1 is specific for histone H3 lysine 14.	O.I.	C.G.	H.G.
81.4	99.9	67.0	At5g39720	833968	AIG2L (AVIRULENCE INDUCED GENE 2 LIKE PROTEIN)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOFA	O.I.	C.G.	H.G.
81.3	99.9	60.4	At3g52310	824396	ABC transporter family protein	F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:plasma membrane;BOMFAPV	O.I.	C.G.	H.G.
80.9	99.9	80.3	At5g24655	832537	LSU4 (RESPONSE TO LOW SULFUR 4)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
80.7	99.9	105.2	At2g03800	814906	GEK1 (GEKO1)	encodes a D-aminoacyl-tRNA deacylase. Involved in detoxification of D-aminoacyl-tRNA. Mutants also show ethanol-hypersensitive phenotype.	O.I.	C.G.	H.G.
80.3	99.9	162.4	At3g53610	824529	ATRAB8	GTPase AtRAB8 (atrab8)	O.I.	C.G.	H.G.
79.3	99.9	155.6	At3g29970	822700	germination protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
78.8	99.9	129.6	At2g07708	815383	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
78.5	99.9	235.8	At1g43800	840977	acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative	F:acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding;P:fatty acid metabolic process, fatty acid biosynthetic process;C:membrane;PBOM	O.I.	C.G.	H.G.
77.5	99.9	80.7	At2g25790	817121	leucine-rich repeat transmembrane protein kinase, putative	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;PMOBFAV	O.I.	C.G.	H.G.
77.1	99.9	39.2	At1g69080	843240	universal stress protein (USP) family protein	F:molecular_function unknown;P:response to stress;C:unknown;PM	O.I.	C.G.	H.G.
77.0	99.9	32.2	At2g16450	816143	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
74.5	99.9	329.9	At2g07783	3768188	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
74.3	99.9	106.6	At5g25270	832599	-	F:molecular_function unknown;P:protein modification process;C:cellular_component unknown;OMBFVP	O.I.	C.G.	H.G.
73.3	99.9	81.2	At3g54030	824570	protein kinase family protein	F:protein tyrosine kinase activity, binding, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;PMBOFVA	O.I.	C.G.	H.G.
72.9	99.9	47.3	At1g33460	3766895	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
72.2	99.9	55.9	At5g25070	832578	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV	O.I.	C.G.	H.G.
70.6	99.9	94.4	At2g44830	819092	protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane, nucleus;MOPFBVA	O.I.	C.G.	H.G.
69.9	99.9	138.5	At4g36350	829787	PAP25 (PURPLE ACID PHOSPHATASE 25)	F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:cell wall;PBOMFA	O.I.	C.G.	H.G.
68.3	99.9	19.4	At1g45100	841077	polyadenylate-binding protein, putative / PABP, putative	F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MFPOB	O.I.	C.G.	H.G.
68.1	99.9	255.8	At3g02040	821175	SRG3 (senescence-related gene 3)	F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:unknown;BMOFPAV	O.I.	C.G.	H.G.
67.8	99.9	108.4	At1g33940	840291	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
66.8	99.8	266.2	At1g73010	843632	phosphatase	F:phosphatase activity;P:metabolic process;C:cellular_component unknown;MPOBF	O.I.	C.G.	H.G.
66.7	99.8	89.3	At2g03780	814905	translin family protein	F:sequence-specific DNA binding, DNA binding;P:biological_process unknown;C:unknown;MFAOP	O.I.	C.G.	H.G.
65.7	99.8	114.7	At2g47260	819339	WRKY23	member of WRKY Transcription Factor; Group I	O.I.	C.G.	H.G.
65.4	99.8	76.3	At5g25240	832595	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
65.0	99.8	38.6	At5g61120	836233	-	F:unknown;P:biological_process unknown;C:unknown;PMO	O.I.	C.G.	H.G.
64.7	99.8	73.8	At5g25080	832579	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO	O.I.	C.G.	H.G.
64.1	99.8	39.8	At3g15990	820844	SULTR3	Encodes sulfate transporter Sultr3;4.	O.I.	C.G.	H.G.
63.4	99.8	174.7	At3g52190	824384	PHF1 (PHOSPHATE TRANSPORTER TRAFFIC FACILITATOR1)	Encodes a plant specific protein structurally related to the SEC12 proteins of the early secretory pathway. Mutation of PHF1 impairs Pi transport. Expression was detected in all tissues, and was induced by Pi starvation. Localized in endoplasmic reticulum (ER), and mutation of PHF1 resulted in ER retention and reduced accumulation of the plasma membrane PHT1;1 transporter.	O.I.	C.G.	H.G.
63.3	99.8	258.3	At1g45688	841102	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PVFBMO	O.I.	C.G.	H.G.
62.8	99.8	92.7	At4g33560	829495	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
62.1	99.8	353.7	At3g17790	821047	PAP17	F:phosphatase activity, protein serine/threonine phosphatase activity, acid phosphatase activity;P:response to hydrogen peroxide, cellular phosphate ion homeostasis;C:cell surface;MOBPFA	O.I.	C.G.	H.G.
62.0	99.8	64.5	At1g71130	843453	AP2 domain-containing transcription factor, putative	encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.	O.I.	C.G.	H.G.
61.9	99.8	127.5	At2g02570	814787	nucleic acid binding	F:nucleic acid binding;P:unknown;C:unknown;MFOPB	O.I.	C.G.	H.G.
61.1	99.8	304.6	At5g20150	832137	SPX1 (SPX DOMAIN GENE 1)	F:molecular_function unknown;P:cellular response to phosphate starvation, positive regulation of cellular response to phosphate starvation;C:nucleus;FMPOBA	O.I.	C.G.	H.G.
60.8	99.8	163.6	At2g07360	815305	SH3 domain-containing protein	F:binding;P:unknown;C:cytosol, nucleus, plasma membrane, membrane;OPMFB	O.I.	C.G.	H.G.
59.6	99.8	15.5	At5g66630	836795	DAR5 (DA1-RELATED PROTEIN 5)	F:zinc ion binding;P:unknown;C:unknown;PMOBF	O.I.	C.G.	H.G.
59.5	99.8	50.8	At1g63650	842669	EGL3 (ENHANCER OF GLABRA 3)	Mutant has reduced trichomes, anthocyanin, and seed coat mucilage and abnormally patterned stomates. Encodes a bHLH Transcription Factor 1. The protein is functionally redundant with GL3 and TT8 and interacts with TTG1, the myb proteins GL1, PAP1 and 2, CPC and TRY, and it will form heterodimers with GL3. Expression in N (non-hair cell forming) cell layers is negatively regulated by WER. Expression in H cells (hair cell forming) is promoted by CPC/TRY.	O.I.	C.G.	H.G.
57.6	99.8	65.5	At1g45170	841085	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
56.9	99.8	46.2	At2g02680	814797	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:intracellular;PMOF	O.I.	C.G.	H.G.

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GSM ID	-
Assay name	E-ATMX-31-raw-cel-1516947916
GSE experiment	-

Microarray experiments to specifically-expressed genes

GSM ID - Assay name E-ATMX-31-raw-cel-1516947916 GSE experiment -

GSM ID -

Assay name E-ATMX-31-raw-cel-1516947916

GSE experiment -