Microarray experiments to specifically-expressed genes

GSM ID -
Assay name E-ATMX-27-raw-cel-1441080604
GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
38.099.8133.7At4g12030826811bile acid:sodium symporter family proteinF:transporter activity, bile acid:sodium symporter activity;P:sodium ion transport;C:membrane;OBMPAO.I.C.G.H.G.
36.599.793.7At5g10140830878FLC (FLOWERING LOCUS C)MADS-box protein encoded by FLOWERING LOCUS C - transcription factor that functions as a repressor of floral transition and contributes to temperature compensation of the circadian clock. Expression is downregulated during cold treatment. Vernalization, FRI and the autonomous pathway all influence the state of FLC chromatin. Both maternal and paternal alleles are reset by vernalization, but their earliest activation differs in timing and location. Histone H3 trimethylation at lysine 4 and histone acetylation are associated with active FLC expression, whereas histone deacetylation and histone H3 dimethylation at lysines 9 and 27 are involved in FLC repression. Expression is also repressed by two small RNAs (30- and 24-nt) complementary to the FLC sense strand 3 to the polyA site. The small RNAs are most likely derived from an antisense transcript of FLC. Interacts with SOC1 and FT chromatin in vivo. Member of a protein complex.O.I.C.G.H.G.
24.399.631.3At5g55570835651unknown proteinF:unknown;P:unknown;C:chloroplast;PMO.I.C.G.H.G.
21.599.6164.1At5g36910833659THI2.2 (THIONIN 2.2)Encodes a thionin that is expressed at a low basal level in seedlings and shows circadian variation. Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.O.I.C.G.H.G.
21.099.628.3At3g21950821753methyltransferaseF:methyltransferase activity;P:response to cadmium ion;C:cellular_component unknown;POBMFO.I.C.G.H.G.
20.599.662.2At1g14700838035PAP3 (PURPLE ACID PHOSPHATASE 3)F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:unknown;C:vacuole;MOBPFO.I.C.G.H.G.
16.699.533.6At4g15510827223photosystem II reaction center PsbP family proteinF:calcium ion binding;P:photosynthesis;C:in 9 components;PBOO.I.C.G.H.G.
15.699.539.5At5g64050836526ERS (GLUTAMATE TRNA SYNTHETASE)Glutamate-tRNA ligase. Targeted to mitochondria and chloroplast. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana.O.I.C.G.H.G.
14.699.4140.8At4g03060828102AOP2 (ALKENYL HYDROXALKYL PRODUCING 2)Encodes a truncated and null function protein, due to a 5-bp deletion in cDNA. The functional allele in ecotype Cvi, AOP2, encodes a 2-oxoglutarate-dependent dioxygenase which is involved in glucosinolate biosynthesis. The natural variation in this locus explains the diversification of alkenyl glucosinolate among different ecotypes of Arabidopsis.O.I.C.G.H.G.
14.399.4131.3At1g27030839592unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPO.I.C.G.H.G.
13.499.443.1At2g28550817403RAP2.7 (RELATED TO AP2.7)F:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent, vegetative to reproductive phase transition;C:nucleus;POBVO.I.C.G.H.G.
12.999.330.7At1g16400838210CYP79F2Encodes cytochrome P450 CYP79F2.O.I.C.G.H.G.
12.599.332.3At1g65860842897FMO GS-OX1 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 1)belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolatesO.I.C.G.H.G.
12.499.330.0At5g39860833982PRE1 (PACLOBUTRAZOL RESISTANCE1)F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PO.I.C.G.H.G.
12.399.340.9At4g28780828999GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
12.299.378.5At1g62780842577unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast, chloroplast stroma;PMOBAFO.I.C.G.H.G.
12.199.348.8At1g50450841467binding / catalyticF:binding, catalytic activity;P:metabolic process;C:chloroplast;BOFMPAO.I.C.G.H.G.
11.799.310.8At2g4757081937060S ribosomal protein L18 (RPL18A)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, large ribosomal subunit;MOFPAO.I.C.G.H.G.
11.699.385.6At3g01060821278unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;BOFPO.I.C.G.H.G.
11.299.228.9At5g20140832136SOUL heme-binding family proteinF:binding;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;OBPMAO.I.C.G.H.G.
11.299.216.0At4g39770830135trehalose-6-phosphate phosphatase, putativeF:catalytic activity, trehalose-phosphatase activity;P:trehalose biosynthetic process, metabolic process;C:cellular_component unknown;BPMOFAO.I.C.G.H.G.
10.999.2221.1At1g29660839843GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:apoplast, nucleus;PBFOMO.I.C.G.H.G.
10.999.240.2At1g29430839819auxin-responsive family proteinF:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO.I.C.G.H.G.
10.899.249.4At5g48220834875indole-3-glycerol phosphate synthase, putativeF:indole-3-glycerol-phosphate synthase activity, catalytic activity;P:metabolic process, tryptophan metabolic process;C:chloroplast, chloroplast stroma;BOAFPO.I.C.G.H.G.
10.599.212.1At2g291603768464-F:unknown;P:unknown;C:unknownO.I.C.G.H.G.
9.299.137.1At1g31690840056amine oxidase/ copper ion binding / quinone bindingF:quinone binding, amine oxidase activity, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBMOPAO.I.C.G.H.G.
8.999.075.7At5g63180836439pectate lyase family proteinF:lyase activity, pectate lyase activity;P:biological_process unknown;C:unknown;BPFOO.I.C.G.H.G.
8.999.022.7At4g30720829195electron carrier/ oxidoreductaseF:electron carrier activity, oxidoreductase activity;P:unknown;C:chloroplast;BOAPFO.I.C.G.H.G.
8.699.020.8At1g18810838463phytochrome kinase substrate-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBVO.I.C.G.H.G.



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