CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID -

Assay name E-ATMX-27-raw-cel-1441080588

GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
46.7 99.8 15.0 At5g10250 830889 DOT3 (DEFECTIVELY ORGANIZED TRIBUTARIES 3) Encodes a protein with an N-terminal BTB/POZ domain and a C-terminal NPH3 family domain. dot3 mutants have defects in shoot and primary root growth and produce an aberrant parallel venation pattern in juvenile leaves. O.I. C.G. H.G.
45.4 99.8 104.4 At5g10140 830878 FLC (FLOWERING LOCUS C) MADS-box protein encoded by FLOWERING LOCUS C - transcription factor that functions as a repressor of floral transition and contributes to temperature compensation of the circadian clock. Expression is downregulated during cold treatment. Vernalization, FRI and the autonomous pathway all influence the state of FLC chromatin. Both maternal and paternal alleles are reset by vernalization, but their earliest activation differs in timing and location. Histone H3 trimethylation at lysine 4 and histone acetylation are associated with active FLC expression, whereas histone deacetylation and histone H3 dimethylation at lysines 9 and 27 are involved in FLC repression. Expression is also repressed by two small RNAs (30- and 24-nt) complementary to the FLC sense strand 3’ to the polyA site. The small RNAs are most likely derived from an antisense transcript of FLC. Interacts with SOC1 and FT chromatin in vivo. Member of a protein complex. O.I. C.G. H.G.
29.8 99.7 200.7 At4g03060 828102 AOP2 (ALKENYL HYDROXALKYL PRODUCING 2) Encodes a truncated and null function protein, due to a 5-bp deletion in cDNA. The functional allele in ecotype Cvi, AOP2, encodes a 2-oxoglutarate-dependent dioxygenase which is involved in glucosinolate biosynthesis. The natural variation in this locus explains the diversification of alkenyl glucosinolate among different ecotypes of Arabidopsis. O.I. C.G. H.G.
27.6 99.7 186.1 At5g36910 833659 THI2.2 (THIONIN 2.2) Encodes a thionin that is expressed at a low basal level in seedlings and shows circadian variation. Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660. O.I. C.G. H.G.
19.7 99.6 37.8 At1g16400 838210 CYP79F2 Encodes cytochrome P450 CYP79F2. O.I. C.G. H.G.
16.3 99.5 55.4 At1g14700 838035 PAP3 (PURPLE ACID PHOSPHATASE 3) F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:unknown;C:vacuole;MOBPF O.I. C.G. H.G.
15.9 99.5 32.9 At4g15510 827223 photosystem II reaction center PsbP family protein F:calcium ion binding;P:photosynthesis;C:in 9 components;PBO O.I. C.G. H.G.
15.6 99.5 76.4 At3g59780 825147 - F:molecular_function unknown;P:biological_process unknown;C:nucleus, chloroplast;OBMFPV O.I. C.G. H.G.
15.2 99.4 47.8 At1g31690 840056 amine oxidase/ copper ion binding / quinone binding F:quinone binding, amine oxidase activity, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBMOPA O.I. C.G. H.G.
15.0 99.4 83.8 At3g29030 822543 EXPA5 (EXPANSIN A5) Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) O.I. C.G. H.G.
13.2 99.4 51.6 At5g66470 836779 GTP binding / RNA binding F:RNA binding, GTP binding;P:unknown;C:chloroplast;BOMAPF O.I. C.G. H.G.
12.5 99.3 230.9 At5g23010 832365 MAM1 (METHYLTHIOALKYLMALATE SYNTHASE 1) Encodes a methylthioalkylmalate synthase, catalyzes the condensation reactions of the first two rounds of methionine chain elongation in the biosynthesis of methionine-derived glucosinolates. O.I. C.G. H.G.
12.4 99.3 38.4 At5g18060 831310 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO O.I. C.G. H.G.
11.3 99.3 133.6 At1g52190 841649 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;PBMFO O.I. C.G. H.G.
11.0 99.2 23.6 At5g17880 831656 CSA1 (constitutive shade-avoidance1) Encodes a TIR-NBS-LRR protein CSA1 that functions in photomorphogenic development. csa1 mutants display a constitutive shade-avoidance (CSA) phenotype (long stem) under high red:far-red rations (i.e. in the absence of a shade signal). csa1 mutation can be complemented by RPS4, a TIR-NBS-LRR protein that confers resistance against bacterium Pseudomonas syringae. O.I. C.G. H.G.
10.9 99.2 71.6 At4g12030 826811 bile acid:sodium symporter family protein F:transporter activity, bile acid:sodium symporter activity;P:sodium ion transport;C:membrane;OBMPA O.I. C.G. H.G.
10.9 99.2 25.5 At5g57780 835886 - F:unknown;P:unknown;C:unknown;P O.I. C.G. H.G.
10.5 99.2 38.2 At2g28550 817403 RAP2.7 (RELATED TO AP2.7) F:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent, vegetative to reproductive phase transition;C:nucleus;POBV O.I. C.G. H.G.
10.5 99.2 18.3 At5g25180 832589 CYP71B14 putative cytochrome P450 O.I. C.G. H.G.
10.3 99.2 27.7 At5g20140 832136 SOUL heme-binding family protein F:binding;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;OBPMA O.I. C.G. H.G.
10.1 99.2 80.5 At5g63180 836439 pectate lyase family protein F:lyase activity, pectate lyase activity;P:biological_process unknown;C:unknown;BPFO O.I. C.G. H.G.
9.9 99.1 70.9 At1g26920 839582 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
9.9 99.1 25.5 At4g32280 829361 IAA29 (INDOLE-3-ACETIC ACID INDUCIBLE 29) Auxin inducible protein. O.I. C.G. H.G.
9.5 99.1 4.5 At2g42380 818839 bZIP transcription factor family protein Encodes a member of the BZIP family of transcription factors. Forms heterodimers with the related protein AtbZIP61. Binds to G-boxes in vitro and is localized to the nucleus in onion epidermal cells. O.I. C.G. H.G.
9.1 99.1 18.7 At3g21950 821753 methyltransferase F:methyltransferase activity;P:response to cadmium ion;C:cellular_component unknown;POBMF O.I. C.G. H.G.
9.0 99.1 75.3 At3g01060 821278 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;BOFP O.I. C.G. H.G.
8.9 99.0 69.0 At1g12250 837778 thylakoid lumenal protein-related F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;BOAPV O.I. C.G. H.G.
8.7 99.0 23.3 At2g41870 818787 remorin family protein F:DNA binding;P:biological_process unknown;C:cellular_component unknown;POMFB O.I. C.G. H.G.
8.6 99.0 23.2 At1g78450 844181 SOUL heme-binding family protein F:binding;P:biological_process unknown;C:endomembrane system;OMPBA O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
46.7	99.8	15.0	At5g10250	830889	DOT3 (DEFECTIVELY ORGANIZED TRIBUTARIES 3)	Encodes a protein with an N-terminal BTB/POZ domain and a C-terminal NPH3 family domain. dot3 mutants have defects in shoot and primary root growth and produce an aberrant parallel venation pattern in juvenile leaves.	O.I.	C.G.	H.G.
45.4	99.8	104.4	At5g10140	830878	FLC (FLOWERING LOCUS C)	MADS-box protein encoded by FLOWERING LOCUS C - transcription factor that functions as a repressor of floral transition and contributes to temperature compensation of the circadian clock. Expression is downregulated during cold treatment. Vernalization, FRI and the autonomous pathway all influence the state of FLC chromatin. Both maternal and paternal alleles are reset by vernalization, but their earliest activation differs in timing and location. Histone H3 trimethylation at lysine 4 and histone acetylation are associated with active FLC expression, whereas histone deacetylation and histone H3 dimethylation at lysines 9 and 27 are involved in FLC repression. Expression is also repressed by two small RNAs (30- and 24-nt) complementary to the FLC sense strand 3’ to the polyA site. The small RNAs are most likely derived from an antisense transcript of FLC. Interacts with SOC1 and FT chromatin in vivo. Member of a protein complex.	O.I.	C.G.	H.G.
29.8	99.7	200.7	At4g03060	828102	AOP2 (ALKENYL HYDROXALKYL PRODUCING 2)	Encodes a truncated and null function protein, due to a 5-bp deletion in cDNA. The functional allele in ecotype Cvi, AOP2, encodes a 2-oxoglutarate-dependent dioxygenase which is involved in glucosinolate biosynthesis. The natural variation in this locus explains the diversification of alkenyl glucosinolate among different ecotypes of Arabidopsis.	O.I.	C.G.	H.G.
27.6	99.7	186.1	At5g36910	833659	THI2.2 (THIONIN 2.2)	Encodes a thionin that is expressed at a low basal level in seedlings and shows circadian variation. Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.	O.I.	C.G.	H.G.
19.7	99.6	37.8	At1g16400	838210	CYP79F2	Encodes cytochrome P450 CYP79F2.	O.I.	C.G.	H.G.
16.3	99.5	55.4	At1g14700	838035	PAP3 (PURPLE ACID PHOSPHATASE 3)	F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:unknown;C:vacuole;MOBPF	O.I.	C.G.	H.G.
15.9	99.5	32.9	At4g15510	827223	photosystem II reaction center PsbP family protein	F:calcium ion binding;P:photosynthesis;C:in 9 components;PBO	O.I.	C.G.	H.G.
15.6	99.5	76.4	At3g59780	825147	-	F:molecular_function unknown;P:biological_process unknown;C:nucleus, chloroplast;OBMFPV	O.I.	C.G.	H.G.
15.2	99.4	47.8	At1g31690	840056	amine oxidase/ copper ion binding / quinone binding	F:quinone binding, amine oxidase activity, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBMOPA	O.I.	C.G.	H.G.
15.0	99.4	83.8	At3g29030	822543	EXPA5 (EXPANSIN A5)	Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	O.I.	C.G.	H.G.
13.2	99.4	51.6	At5g66470	836779	GTP binding / RNA binding	F:RNA binding, GTP binding;P:unknown;C:chloroplast;BOMAPF	O.I.	C.G.	H.G.
12.5	99.3	230.9	At5g23010	832365	MAM1 (METHYLTHIOALKYLMALATE SYNTHASE 1)	Encodes a methylthioalkylmalate synthase, catalyzes the condensation reactions of the first two rounds of methionine chain elongation in the biosynthesis of methionine-derived glucosinolates.	O.I.	C.G.	H.G.
12.4	99.3	38.4	At5g18060	831310	auxin-responsive protein, putative	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO	O.I.	C.G.	H.G.
11.3	99.3	133.6	At1g52190	841649	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:membrane;PBMFO	O.I.	C.G.	H.G.
11.0	99.2	23.6	At5g17880	831656	CSA1 (constitutive shade-avoidance1)	Encodes a TIR-NBS-LRR protein CSA1 that functions in photomorphogenic development. csa1 mutants display a constitutive shade-avoidance (CSA) phenotype (long stem) under high red:far-red rations (i.e. in the absence of a shade signal). csa1 mutation can be complemented by RPS4, a TIR-NBS-LRR protein that confers resistance against bacterium Pseudomonas syringae.	O.I.	C.G.	H.G.
10.9	99.2	71.6	At4g12030	826811	bile acid:sodium symporter family protein	F:transporter activity, bile acid:sodium symporter activity;P:sodium ion transport;C:membrane;OBMPA	O.I.	C.G.	H.G.
10.9	99.2	25.5	At5g57780	835886	-	F:unknown;P:unknown;C:unknown;P	O.I.	C.G.	H.G.
10.5	99.2	38.2	At2g28550	817403	RAP2.7 (RELATED TO AP2.7)	F:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent, vegetative to reproductive phase transition;C:nucleus;POBV	O.I.	C.G.	H.G.
10.5	99.2	18.3	At5g25180	832589	CYP71B14	putative cytochrome P450	O.I.	C.G.	H.G.
10.3	99.2	27.7	At5g20140	832136	SOUL heme-binding family protein	F:binding;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;OBPMA	O.I.	C.G.	H.G.
10.1	99.2	80.5	At5g63180	836439	pectate lyase family protein	F:lyase activity, pectate lyase activity;P:biological_process unknown;C:unknown;BPFO	O.I.	C.G.	H.G.
9.9	99.1	70.9	At1g26920	839582	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
9.9	99.1	25.5	At4g32280	829361	IAA29 (INDOLE-3-ACETIC ACID INDUCIBLE 29)	Auxin inducible protein.	O.I.	C.G.	H.G.
9.5	99.1	4.5	At2g42380	818839	bZIP transcription factor family protein	Encodes a member of the BZIP family of transcription factors. Forms heterodimers with the related protein AtbZIP61. Binds to G-boxes in vitro and is localized to the nucleus in onion epidermal cells.	O.I.	C.G.	H.G.
9.1	99.1	18.7	At3g21950	821753	methyltransferase	F:methyltransferase activity;P:response to cadmium ion;C:cellular_component unknown;POBMF	O.I.	C.G.	H.G.
9.0	99.1	75.3	At3g01060	821278	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;BOFP	O.I.	C.G.	H.G.
8.9	99.0	69.0	At1g12250	837778	thylakoid lumenal protein-related	F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;BOAPV	O.I.	C.G.	H.G.
8.7	99.0	23.3	At2g41870	818787	remorin family protein	F:DNA binding;P:biological_process unknown;C:cellular_component unknown;POMFB	O.I.	C.G.	H.G.
8.6	99.0	23.2	At1g78450	844181	SOUL heme-binding family protein	F:binding;P:biological_process unknown;C:endomembrane system;OMPBA	O.I.	C.G.	H.G.

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GSM ID	-
Assay name	E-ATMX-27-raw-cel-1441080588
GSE experiment	-

Microarray experiments to specifically-expressed genes

GSM ID - Assay name E-ATMX-27-raw-cel-1441080588 GSE experiment -

GSM ID -

Assay name E-ATMX-27-raw-cel-1441080588

GSE experiment -