Microarray experiments to specifically-expressed genes

GSM ID -
Assay name E-ATMX-25-raw-cel-1441077500
GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
200.2100.0128.9At5g44570834484unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
161.499.975.9At1g32960840190SBT3.3F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast, plant-type cell wall;BPOAFMO.I.C.G.H.G.
92.399.9189.7At2g29350817484SAG13senescence-associated gene SAG13 encoding a short-chain alcohol dehydrogenaseO.I.C.G.H.G.
90.999.9331.6At2g18660816381EXLB3 (EXPANSIN-LIKE B3 PRECURSOR)Encodes PNP-A (Plant Natriuretic Peptide A). PNPs are a class of systemically mobile molecules distantly related to expansins; their biological role has remained elusive. PNP-A contains a signal peptide domain and is secreted into the extracellular space. Co-expression analyses using microarray data suggest that PNP-A may function as a component of plant defence response and SAR in particular, and could be classified as a newly identified PR protein.O.I.C.G.H.G.
88.799.9182.7At4g10500826642oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:secondary metabolic process;C:unknown;POBFMO.I.C.G.H.G.
77.099.916.8At1g71390843480AtRLP11 (Receptor Like Protein 11)F:protein binding;P:signal transduction, defense response;C:endomembrane system;PMOBFAVO.I.C.G.H.G.
75.899.9131.4At1g32940840188SBT3.5F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast;BPOAFMO.I.C.G.H.G.
75.299.915.5At1g33950840292avirulence-responsive family protein / avirulence induced gene (AIG1) family proteinF:GTP binding;P:response to bacterium;C:unknown;MOPBFVO.I.C.G.H.G.
70.599.9124.3At1g35230840412AGP5 (ARABINOGALACTAN-PROTEIN 5)Encodes arabinogalactan-protein (AGP5).O.I.C.G.H.G.
69.299.9104.9At4g37150829869MES9 (METHYL ESTERASE 9)Encodes a protein shown to have carboxylesterase activity, methyl salicylate esterase activity, methyl jasmonate esterase activity, and methyl IAA esterase activity in vitro. MES9 appears to be involved in MeSA hydrolysis in planta. Expression of MES9 can restore systemic acquired resistance in SAR-deficient tobacco plants. This protein does not act on MeGA4, or MEGA9 in vitro.O.I.C.G.H.G.
68.999.988.6At4g23150828414protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
65.199.8403.2At2g43570818959chitinase, putativeF:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:apoplast, plant-type cell wall;PBFOMVO.I.C.G.H.G.
60.299.8144.8At5g13320831173PBS3 (AVRPPHB SUSCEPTIBLE 3)Encodes PBS3 (avrPphB susceptible), also known as GDG1 (GH3-Like Defense Gene 1), WIN3 (HopW1-1-Interacting 3). Involved in disease-resistance signaling pathway. Required for accumulation of salicylic acid, activation of defense responses and resistance to Pseudomonas syringae. Expression detected in cotyledons, true leaves, hypocotyls and occasionally in some parts of roots from 10-day-old seedlings. No expression was detected in root, stem, rosette or cauline leaves of mature 4- to 5-week-old plants.O.I.C.G.H.G.
59.499.8302.2At3g60420825213-F:unknown;P:unknown;C:cellular_component unknown;OBFPMO.I.C.G.H.G.
55.299.8199.2At3g45860823729receptor-like protein kinase, putativeF:kinase activity;P:defense response;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
54.599.8177.5At2g04450814985ATNUDT6 (Arabidopsis thaliana Nudix hydrolase homolog 6)F:ADP-ribose diphosphatase activity, hydrolase activity, NAD or NADH binding;P:response to other organism;C:cytosol;OBMPAFVO.I.C.G.H.G.
53.899.8684.2At1g75040843842PR5 (PATHOGENESIS-RELATED GENE 5)Thaumatin-like protein involved in response to pathogens. mRNA level of the PR-5 gene (At1g75040)is significantly changed after cutting the inflorescence stem indicating the existence of a network of signal transducing pathways as other stress-regulated genes (At5g01410, At3g17800, At1g29930)do not response to the treatment.O.I.C.G.H.G.
53.199.842.4At2g241603768109-F:unknown;P:unknown;C:unknownO.I.C.G.H.G.
50.599.886.8At2g29470817496ATGSTU3 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 3)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
49.399.8158.4At5g26920832750CBP60G (CAM-BINDING PROTEIN 60-LIKE.G)Encodes a calmodulin-binding protein CBP60g (calmodulin binding protein 60-like.g). The calmodulin-binding domain is located near the N-terminus; calmodulin binding is dependent on Ca(2+). Inducible by both bacterial pathogen and MAMP (microbe-associated molecular pattern) treatments. Bacterial growth is enhanced in cbp60g mutants. cbp60g mutants also show defects in salicylic acid (SA) accumulation and SA signaling.O.I.C.G.H.G.
48.499.8573.0At3g57260824893BGL2 (BETA-1,3-GLUCANASE 2)beta 1,3-glucanaseO.I.C.G.H.G.
48.499.8185.7At2g45220819130pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:membrane, plant-type cell wall;PBFOMO.I.C.G.H.G.
46.599.88.8At1g30100839889NCED5 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 5)Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene increases during the first 6h of imbibition.O.I.C.G.H.G.
43.399.8184.5At5g39520833948unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPOO.I.C.G.H.G.
41.299.851.1At4g39830830142L-ascorbate oxidase, putativeF:oxidoreductase activity, L-ascorbate oxidase activity, copper ion binding;P:oxidation reduction;C:endomembrane system, extracellular region;BFPMOAO.I.C.G.H.G.
40.399.890.2At5g38900833882DSBA oxidoreductase family proteinF:protein disulfide oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;BOFPMAO.I.C.G.H.G.
39.799.8153.2At3g47540823908chitinase, putativeF:chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBMOFO.I.C.G.H.G.
39.699.811.1At4g30230829146unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
37.599.7277.6At2g37970818374SOUL-1F:binding;P:red or far red light signaling pathway, N-terminal protein myristoylation;C:plasma membrane, vacuole;OBPMAO.I.C.G.H.G.
37.399.786.1At3g47480823902calcium-binding EF hand family proteinF:calcium ion binding;P:biological_process unknown;C:endomembrane system;MPFOBO.I.C.G.H.G.
34.199.794.9At2g35980818171YLS9 (YELLOW-LEAF-SPECIFIC GENE 9)Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus, spermine and during senescence. The gene product is localized to the chloroplast.O.I.C.G.H.G.
33.999.7269.1At5g10380830902RING1Encodes a RING finger domain protein with E3 ligase activity that is localized to the lipid rafts of the plasma membrane. Expression is increased in response to fungal pathogen. May be involved in regulation of programmed cell death by facilitating degredation of regulation of PDC activators.O.I.C.G.H.G.
33.999.7118.1At1g15520838122PDR12 (PLEIOTROPIC DRUG RESISTANCE 12)ABC transporter family involved in resistant to lead. Localizes to plasma membrane. Upregulated by lead. Expressed in leaves, flowers. Not expressed in roots.O.I.C.G.H.G.
33.599.7149.4At5g18470831965curculin-like (mannose-binding) lectin family proteinF:sugar binding;P:biological_process unknown;C:plant-type cell wall;PO.I.C.G.H.G.
33.499.731.0At3g13100820498ATMRP7member of MRP subfamilyO.I.C.G.H.G.
33.199.761.7At3g48090823964EDS1 (enhanced disease susceptibility 1)Component of R gene-mediated disease resistance in Arabidopsis thaliana with homology to eukaryotic lipases.O.I.C.G.H.G.
31.899.7214.3At3g48640824024unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
31.699.78.3At1g72760843608protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
30.799.757.1At1g19250838508FMO1 (FLAVIN-DEPENDENT MONOOXYGENASE 1)FMO1 is required for full expression of TIR-NB-LRR–conditioned resistance to avirulent pathogens and for basal resistance to invasive virulent pathogens. Functions in an EDS1-regulated but SA-independent mechanism that promotes resistance and cell death at pathogen infection sites.O.I.C.G.H.G.
30.199.7343.7At5g55450835638protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:response to other organism, lipid transport;C:endomembrane system;PO.I.C.G.H.G.
28.099.740.7At1g70690843406HWI1 (HOPW1-1-INDUCED GENE1)Encodes a plasmodesmal protein that may be involved in the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain.O.I.C.G.H.G.
27.799.786.1At5g53870835468plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:plasma membrane, anchored to membrane;MFOBPVAO.I.C.G.H.G.
27.399.748.4At4g03450827913ankyrin repeat family proteinF:protein binding;P:unknown;C:unknown;MOPFBVAO.I.C.G.H.G.
26.199.714.0At1g66960843014lupeol synthase, putative / 2,3-oxidosqualene-triterpenoid cyclase, putativeF:lupeol synthase activity;P:pentacyclic triterpenoid biosynthetic process;C:unknown;BPOFMO.I.C.G.H.G.
25.999.7220.6At1g08450837365CRT3 (CALRETICULIN 3)Encodes calreticulin CRT3.O.I.C.G.H.G.
25.099.616.8At5g11210830991ATGLR2.5member of Putative ligand-gated ion channel subunit familyO.I.C.G.H.G.
24.799.6653.5At2g14610815949PR1 (PATHOGENESIS-RELATED GENE 1)PR1 gene expression is induced in response to a variety of pathogens. It is a useful molecular marker for the SAR response. Though the Genbank record for the cDNA associated to this gene is called 'PR-1-like', the sequence actually corresponds to PR1. Expression of this gene is salicylic-acid responsive.O.I.C.G.H.G.
23.999.627.9At2g04430814983atnudt5 (Arabidopsis thaliana Nudix hydrolase homolog 5)F:hydrolase activity;P:unknown;C:cytosol;BOMPAFVO.I.C.G.H.G.
23.899.675.2At3g13950820608unknown proteinF:molecular_function unknown;P:unknown;C:unknown;PO.I.C.G.H.G.
23.399.637.7At5g64000836521SAL23'(2'),5'-bisphosphate nucleotidaseO.I.C.G.H.G.
22.999.669.9At5g54610835550ANK (ankyrin)Induced in response to Salicylic acid. Belongs to the ankyrin repeat protein family.O.I.C.G.H.G.
22.899.631.4At1g57650842141-F:unknown;P:defense response;C:cellular_component unknown;PMBOFAVO.I.C.G.H.G.
22.799.652.6At5g46230834665unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
22.299.6101.9At1g68620843192hydrolaseF:hydrolase activity;P:metabolic process;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
22.299.657.7At4g00700828031C2 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFO.I.C.G.H.G.
22.299.619.9At5g48400834895ATGLR1.2member of Putative ligand-gated ion channel subunit familyO.I.C.G.H.G.
22.099.643.6At5g39040833896ATTAP2member of TAP subfamilyO.I.C.G.H.G.
21.999.667.1At2g18680816383unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBOO.I.C.G.H.G.
21.999.619.8At1g16530838223ASL9 (ASYMMETRIC LEAVES 2 LIKE 9)F:unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
21.499.6151.1At2g30140817566UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:response to cyclopentenone;C:cellular_component unknown;PMBVOFO.I.C.G.H.G.
21.499.654.9At1g34750840379protein phosphatase 2C, putative / PP2C, putativeF:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:plasma membrane;PMOBFVAO.I.C.G.H.G.
21.299.67.1At1g17615838338disease resistance protein (TIR-NBS class), putativeF:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PBMOO.I.C.G.H.G.
21.199.692.3At4g33540829493metallo-beta-lactamase family proteinF:hydrolase activity, catalytic activity;P:response to arsenic, metabolic process;C:chloroplast;OBAPMFO.I.C.G.H.G.
20.699.636.3At1g71100843450RSW10 (RADIAL SWELLING 10)Encodes a ribose 5-phosphate isomerase involved in the formation of uridine used for the synthesis of UDP-sugars. Mutants of this gene are affected in cellulose biosynthesis.O.I.C.G.H.G.
20.199.662.2At3g22160821780VQ motif-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POMFBVO.I.C.G.H.G.
19.699.6269.8At5g10760830943aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:apoplast;PMFOO.I.C.G.H.G.
19.599.6214.1At5g24530832524DMR6 (DOWNY MILDEW RESISTANT 6)Encodes a putative 2OG-Fe(II) oxygenase that is defense-associated but required for susceptibility to downy mildew.O.I.C.G.H.G.
19.499.6271.4At2g15130816001plant basic secretory protein (BSP) family proteinF:molecular_function unknown;P:defense response;C:endomembrane system;PFBOO.I.C.G.H.G.
18.999.5100.7At1g66690842987S-adenosyl-L-methionine:carboxyl methyltransferase family proteinF:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:cellular_component unknown;POBMFO.I.C.G.H.G.
18.899.511.9At5g65050836629AGL31 (AGAMOUS LIKE MADS-BOX PROTEIN 31)Originally published as Agamous like MADS-box protein AGL31. One of a group of MADS box genes involved in control of flowering time. Four variant sequences have been identified for this locus but have not been characterized for differences in expression pattern and/or function.O.I.C.G.H.G.
18.799.559.7At1g01560839523ATMPK11member of MAP KinaseO.I.C.G.H.G.
18.699.5127.7At2g37760818353aldo/keto reductase family proteinF:oxidoreductase activity;P:response to cadmium ion;C:unknown;BOMFPAO.I.C.G.H.G.
18.299.541.0At3g52430824408PAD4 (PHYTOALEXIN DEFICIENT 4)Encodes a lipase-like gene that is important for salicylic acid signaling and function in resistance (R) gene-mediated and basal plant disease resistance. PAD4 can interact directly with EDS1, another disease resistance signaling protein. Expressed at elevated level in response to green peach aphid (GPA) feeding, and modulates the GPA feeding-induced leaf senescence through a mechanism that doesn't require camalexin synthesis and salicylic acid (SA) signaling.O.I.C.G.H.G.
17.899.580.0At3g45620823704transducin family protein / WD-40 repeat family proteinThis gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligaseO.I.C.G.H.G.
17.799.582.2At1g73800--O.I.C.G.H.G.
17.699.579.4At1g13470837907unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
17.499.5127.6At3g61220825294short-chain dehydrogenase/reductase (SDR) family proteinF:(-)-menthol dehydrogenase activity, oxidoreductase activity, (+)-neomenthol dehydrogenase activity;P:defense response;C:plasma membrane;BOMFPAO.I.C.G.H.G.
17.299.553.3At5g02780831800In2-1 protein, putativeF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMOFAO.I.C.G.H.G.
17.299.531.7At2g45570819165CYP76C2member of CYP76CO.I.C.G.H.G.
17.099.526.0At1g05880837098nucleic acid binding / protein binding / structural molecule/ zinc ion bindingF:protein binding, structural molecule activity, zinc ion binding, nucleic acid binding;P:biological_process unknown;C:tight junction;MOPFO.I.C.G.H.G.
16.899.5243.6At5g19240832044unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
16.899.598.7At4g23140828413CRK6 (CYSTEINE-RICH RLK 6)Arabidopsis thaliana receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307)O.I.C.G.H.G.
16.799.555.9At5g42830834294transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO.I.C.G.H.G.
16.699.526.9At4g04490825779protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
16.599.591.0At3g10420820206sporulation protein-relatedF:nucleoside-triphosphatase activity, nucleotide binding;P:unknown;C:chloroplast;BOPAMFO.I.C.G.H.G.
16.599.577.8At2g30770817628CYP71A13 (cytochrome P450, family 71, subfamily A, polypeptide 13)putative cytochrome P450O.I.C.G.H.G.
16.499.559.8At1g66880843006serine/threonine protein kinase family proteinF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
16.299.526.6At3g23110821886AtRLP37 (Receptor Like Protein 37)F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAVO.I.C.G.H.G.
16.099.5114.5At2g30550817604lipase class 3 family proteinF:triacylglycerol lipase activity;P:lipid metabolic process;C:chloroplast;PFOBMVO.I.C.G.H.G.
15.899.514.7At1g53100841744acetylglucosaminyltransferaseF:acetylglucosaminyltransferase activity;P:carbohydrate biosynthetic process;C:membrane;MPBVOO.I.C.G.H.G.
15.799.591.3At2g41250818724haloacid dehalogenase-like hydrolase family proteinF:hydrolase activity, catalytic activity, phosphoglycolate phosphatase activity;P:metabolic process;C:mitochondrion;BOMAPFO.I.C.G.H.G.
15.699.5108.0At1g22400838846UGT85A1F:in 6 functions;P:metabolic process;C:cellular_component unknown;PMBVOFO.I.C.G.H.G.
15.699.551.6At3g50770824241calmodulin-related protein, putativeF:calcium ion binding;P:biological_process unknown;C:chloroplast;MFPOBO.I.C.G.H.G.
15.499.550.7At3g13910820604unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PO.I.C.G.H.G.
15.399.465.3At3g22910821863calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA13)F:calmodulin binding, calcium-transporting ATPase activity;P:cation transport, calcium ion transport, metabolic process, ATP biosynthetic process;C:membrane;BMOFPAVO.I.C.G.H.G.
15.399.416.3At2g29090817457CYP707A2Encodes a protein with ABA 8'-hydroxylase activity, involved in ABA catabolism. Member of the CYP707A gene family. This gene predominantly accumulates in dry seeds and is up-regulated immediately following imbibition. CYP707A2 appears to play a major role in the rapid decrease in ABA levels during early seed imbibition.O.I.C.G.H.G.
15.299.427.6At4g23200828419protein kinase family proteinF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:vacuole;MPOBFVAO.I.C.G.H.G.
15.199.451.8At2g32680817828AtRLP23 (Receptor Like Protein 23)F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAVO.I.C.G.H.G.
15.099.473.1At3g26210822222CYP71B23putative cytochrome P450O.I.C.G.H.G.
15.099.427.3At3g53150824481UGT73D1 (UDP-glucosyl transferase 73D1)F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity;P:metabolic process;C:endomembrane system;PMBVOFO.I.C.G.H.G.



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