Microarray experiments to specifically-expressed genes

GSM ID -
Assay name E-ATMX-24-raw-cel-1441078054
GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
60.199.825.3At5g24480832519beta-galactosidaseF:beta-galactosidase activity;P:carbohydrate metabolic process;C:beta-galactosidase complex;PO.I.C.G.H.G.
34.999.715.7At3g27920822415ATMYB0 (MYB DOMAIN PROTEIN 0)Encodes a Myb-like protein that is required for induction of trichome development.O.I.C.G.H.G.
28.299.743.5At1g80760844415NIP6Encodes a protein with boron transporter activity. It helps to preferentially direct boron to young developing tissues in the shoot, such as immature leaves, under low boron conditions. This boron channel appears to be impermeable to water, unlike the closely related NIP5;1 boron transporter. This protein also allows the transport of glycerol, urea, and formimide but not larger uncharged solutes such as arabitol and sucrose when it is expressed heterologously.O.I.C.G.H.G.
28.099.718.6At5g53210835402SPCH (SPEECHLESS)Encodes a basic helix-loop-helix (bHLH) transcription factor that is necessary and sufficient for the asymmetric divisions that establish the stomatal lineage in Arabidopsis thaliana. Expression of SPCH in young epidermal cells allows these cells to make asymmetric divisions. SPCH is a substrate of a kinase MPK3 and MPK6.O.I.C.G.H.G.
26.599.723.6At3g63300825505phosphoinositide bindingF:phosphoinositide binding;P:signal transduction;C:unknown;OMPBFO.I.C.G.H.G.
25.499.619.9At1g72670843599iqd8 (IQ-domain 8)F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PMFOO.I.C.G.H.G.
23.799.656.3At1g48100841228glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinF:polygalacturonase activity;P:carbohydrate metabolic process;C:unknown;FPBOMVAO.I.C.G.H.G.
22.499.610.0At4g03270828000CYCD6F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:nucleus;MPOFVO.I.C.G.H.G.
20.799.650.8At5g15360831388unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
19.999.612.0At4g31805829309WRKY family transcription factorF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:unknown;PMOBO.I.C.G.H.G.
19.799.688.5At3g06730819858thioredoxin family proteinF:unknown;P:cell redox homeostasis;C:thylakoid, chloroplast, nucleoid;BOMPFAO.I.C.G.H.G.
19.499.69.2At3g15550820794unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO.I.C.G.H.G.
18.499.566.5At5g10140830878FLC (FLOWERING LOCUS C)MADS-box protein encoded by FLOWERING LOCUS C - transcription factor that functions as a repressor of floral transition and contributes to temperature compensation of the circadian clock. Expression is downregulated during cold treatment. Vernalization, FRI and the autonomous pathway all influence the state of FLC chromatin. Both maternal and paternal alleles are reset by vernalization, but their earliest activation differs in timing and location. Histone H3 trimethylation at lysine 4 and histone acetylation are associated with active FLC expression, whereas histone deacetylation and histone H3 dimethylation at lysines 9 and 27 are involved in FLC repression. Expression is also repressed by two small RNAs (30- and 24-nt) complementary to the FLC sense strand 3 to the polyA site. The small RNAs are most likely derived from an antisense transcript of FLC. Interacts with SOC1 and FT chromatin in vivo. Member of a protein complex.O.I.C.G.H.G.
15.199.415.8At1g33440840237proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:plasma membrane, membrane;BPMOFO.I.C.G.H.G.
14.899.441.3At3g17680821035-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMBFO.I.C.G.H.G.
14.699.432.2At2g48120819424PAC (PALE CRESS)The pale cress (pac) mutant affects chloroplast and leaf development; mutants are ABA-deficient and accumulate lower levels of carotenoids and chlorophyll compared to wild type. PAC is probably involved in chloroplast mRNA maturation. Three alternative transcripts of this gene exist.O.I.C.G.H.G.
13.899.428.7At1g11600837704CYP77B1member of CYP77BO.I.C.G.H.G.
13.599.432.2At2g40960818696nucleic acid bindingF:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOO.I.C.G.H.G.
13.599.415.9At5g58760835990DDB2 (damaged DNA-binding 2)F:nucleotide binding, zinc ion binding, nucleic acid binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOBPAO.I.C.G.H.G.
13.499.435.6At4g14770827132TCX2 (TESMIN/TSO1-LIKE CXC 2)F:transcription factor activity;P:regulation of transcription;C:chloroplast;OMPFBO.I.C.G.H.G.
13.499.424.0At4g02800828171unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFBPVAO.I.C.G.H.G.
13.399.440.4At1g66250842942glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PFOO.I.C.G.H.G.
12.899.333.9At5g58390835952peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBMO.I.C.G.H.G.
12.799.3186.5At4g22490828344protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
12.699.362.3At2g43800818984formin homology 2 domain-containing protein / FH2 domain-containing proteinF:actin binding;P:cellular component organization, actin cytoskeleton organization;C:plasma membrane;MPFOBVAO.I.C.G.H.G.
12.599.330.1At1g18370838418HIK (HINKEL)Mutant has cytokinesis defects; seedling lethalO.I.C.G.H.G.
12.499.319.2At2g14580815945ATPRB1pathogenesis related protein, encodes a basic PR1-like protein. Expresses in flowers, roots, and not in leaves and responses to ethylene and methyl jasmonate. Salicylic acid represses gene expression.O.I.C.G.H.G.
12.199.333.2At5g59330836052lipid bindingF:lipid binding;P:lipid transport;C:endomembrane systemO.I.C.G.H.G.
11.999.330.4At5g50740835146metal ion bindingF:metal ion binding;P:metal ion transport;C:cellular_component unknown;POMBFVO.I.C.G.H.G.
11.799.373.2At5g10180830882AST68Encodes a low-affinity sulfate transporter expressed in the root cap and central cylinder, where it is induced by sulfur starvation. Expression in the shoot vascular system is not induced by sulfur starvation.O.I.C.G.H.G.
11.599.345.7At4g39510830105CYP96A12member of CYP96AO.I.C.G.H.G.
11.599.340.8At2g47160819329BOR1 (REQUIRES HIGH BORON 1)Boron transporter. Protein accumulates in shoots and roots under conditions of boron deficiency and is degraded within several hours of restoring boron supply. Localized to the plasma membrane under B limitation, and to the cytoplasm after B application before degradation. Protein is transferred via the endosomes to the vacuole for degradation.O.I.C.G.H.G.
11.599.332.6At2g26180817158IQD6 (IQ-domain 6)F:calmodulin binding;P:unknown;C:cellular_component unknown;PMOFO.I.C.G.H.G.
11.399.348.5At3g23290821908--O.I.C.G.H.G.
11.099.262.1At4g37750829931ANT (AINTEGUMENTA)ANT is required for control of cell proliferation and encodes a putative transcriptional regulator similar to AP2. Loss of function alleles have reduced fertility, abnormal ovules and abnormal lateral organs. Expressed specifically in the chalaza and in floral organ primordia.O.I.C.G.H.G.
10.999.222.7At2g07170815286bindingF:binding;P:biological_process unknown;C:cellular_component unknown;PFBOMAO.I.C.G.H.G.
10.999.218.2At1g80080844348TMM (TOO MANY MOUTHS)Encodes a transmembrane leucine-repeat containing receptor-like protein that is expressed in proliferative postprotodermal cells. Recessive mutation leads to disruption of asymmetric cell division during stomata development.O.I.C.G.H.G.
10.899.257.1At1g14410838003WHY1 (WHIRLY 1)Encodes a homolog of the potato p24 protein. Binds single strand telomeric repeats. Negatively regulates telomerase activity and telomere length.O.I.C.G.H.G.
10.899.249.1At1g56430842096NAS4 (NICOTIANAMINE SYNTHASE 4)F:nicotianamine synthase activity;P:nicotianamine biosynthetic process;C:cellular_component unknown;PFABOO.I.C.G.H.G.
10.899.223.4At5g19260832046unknown proteinF:unknown;P:unknown;C:unknown;MOFPBVO.I.C.G.H.G.
10.899.218.1At3g57830824952leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
10.799.212.5At3g30340822735nodulin MtN21 family proteinF:unknown;P:unknown;C:endomembrane system, membrane;OBPAMO.I.C.G.H.G.
10.699.250.2At1g72040843535deoxynucleoside kinase familyF:phosphotransferase activity, alcohol group as acceptor, ATP binding;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:nucleus;BOMVPO.I.C.G.H.G.
10.699.245.5At4g34160829564CYCD3encodes a cyclin D-type protein involved in the switch from cell proliferation to the final stages of differentiation. The gene is transcriptionally regulated by cytokinin and brassinosteroid. Protein interacts with cyclin-dependent kinase inhibitor ICK1.O.I.C.G.H.G.
10.699.225.5At5g08020830696RPA70B (RPA70-KDA SUBUNIT B)Encodes a homolog of Replication Protein A. rpa70b mutants are hypersensitive to UV-B radiation and MMS treatments suggesting a role for this protein in DNA damage repair.O.I.C.G.H.G.
10.599.287.9At1g08560837378SYP111 (SYNTAXIN OF PLANTS 111)member of SYP11 Gene FamilyO.I.C.G.H.G.
10.599.211.8At2g37380818314unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBO.I.C.G.H.G.
10.599.210.1At5g60880836209unknown proteinF:unknown;P:unknown;C:cellular_component unknown;OPMFO.I.C.G.H.G.
10.499.249.6At4g02060828153PRL (PROLIFERA)Member of the minichromosome maintenance complex, involved in DNA replication initiation. Abundant in proliferating and endocycling tissues. Localized in the nucleus during G1, S and G2 phases of the cell cycle, and are released into the cytoplasmic compartment during mitosis. Binds chromatin.O.I.C.G.H.G.
10.499.218.9At3g12170820394DNAJ heat shock N-terminal domain-containing proteinF:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
10.399.224.5At4g30720829195electron carrier/ oxidoreductaseF:electron carrier activity, oxidoreductase activity;P:unknown;C:chloroplast;BOAPFO.I.C.G.H.G.
10.399.214.4At4g24790828581ATP binding / DNA binding / DNA-directed DNA polymeraseF:DNA binding, DNA-directed DNA polymerase activity, ATP binding;P:DNA replication;C:DNA polymerase III complex;BOFMAPVO.I.C.G.H.G.
10.099.218.1At3g55660824732ROPGEF6Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.O.I.C.G.H.G.
9.999.19.0At1g11300837672ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar bindingF:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
9.899.125.8At3g51280824291male sterility MS5, putativeF:binding;P:unknown;C:cellular_component unknown;OBPAFO.I.C.G.H.G.
9.899.114.3At5g55340835627long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family proteinF:acyltransferase activity;P:biological_process unknown;C:cellular_component unknown;BPOFO.I.C.G.H.G.
9.799.116.8At3g25100822101CDC45 (cell division cycle 45)Required for normal meiosis, may act in the last round of DNA replication prior to meiosis, sequence similar to yeast CDC45O.I.C.G.H.G.
9.799.116.5At1g78650844201POLD3Similar to DNA polymerase delta (POLD3), which in other organism was shown to be involved in the elongation of DNA replication.O.I.C.G.H.G.
9.699.111.4At3g20150821558kinesin motor family proteinF:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex, chloroplast;MOFPBAVO.I.C.G.H.G.
9.599.1117.9At2g077833768188-F:unknown;P:unknown;C:unknownO.I.C.G.H.G.
9.599.170.6At4g33260829462CDC20.2putative cdc20 protein (CDC20.2)O.I.C.G.H.G.
9.599.140.0At4g28310828946unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMO.I.C.G.H.G.
9.599.117.5At4g05190825867ATK5 (ARABIDOPSIS THALIANA KINESIN 5)ATK5 encodes a kinesin protein involved in microtubule spindle morphogenesis. It acts as a minus-end directed motor as well as a plus-end tracking protein (+TIP). Localizes to mitotic spindle midzones and regions rich in growing plus-ends within phragmoplasts.O.I.C.G.H.G.
9.599.116.3At1g76310843964CYCB2core cell cycle genesO.I.C.G.H.G.
9.599.115.8At1g10780837621F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
9.499.129.5At1g09420837465G6PD4 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 4)Encodes a protein similar to glucose-6-phosphate dehydrogenase but, based on amino acid differences in the active site and lack of activity, does not encode a functional G6PDH. The amino acid sequence for the consensus sequence of the G6PDH active site (DHYLGKE) differs in three places in this protein. gc exon splice site at 20574 is based on protein alignment, and is not confirmed experimentally.O.I.C.G.H.G.
9.399.142.9At2g37790818356aldo/keto reductase family proteinF:oxidoreductase activity;P:oxidation reduction;C:cytosol, nucleus;BOMFPAO.I.C.G.H.G.
9.399.125.9At4g32980829435ATH1 (ARABIDOPSIS THALIANA HOMEOBOX GENE 1)Encodes transcription factor involved in photomorphogenesis. Regulates gibberellin biosynthesis. Activated by AGAMOUS in a cal-1, ap1-1 background. Expressed at low levels in developing stamens. Increased levels of ATH1 severely delay flowering in the C24 accession. Most remarkably, ectopically expressed ATH1 hardly had an effect on flowering time in the Col-0 and Ler accessions. ATH1 physically interacts with STM, BP and KNAT6 and enhances the shoot apical meristem defect of some of these genes suggesting a role in SAM maintenance. Nuclear localization is dependent upon interaction with STM.O.I.C.G.H.G.
9.299.112.4At5g55520835646-F:unknown;P:biological_process unknown;C:unknown;MOBFPAVO.I.C.G.H.G.
9.299.16.5At3g50890824253AtHB28 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 28)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;PO.I.C.G.H.G.
9.199.1282.2At2g42840818884PDF1 (PROTODERMAL FACTOR 1)Encodes a putative extracellular proline-rich protein is exclusively expressed in the L1 layer of vegetative, inflorescence and floral meristems and the protoderm of organ primordia.O.I.C.G.H.G.
9.199.148.4At1g72810843612threonine synthase, putativeF:pyridoxal phosphate binding, catalytic activity, threonine synthase activity;P:amino acid metabolic process, threonine biosynthetic process, metabolic process;C:chloroplast;BOAMPFO.I.C.G.H.G.
9.199.140.6At3g23890821972TOPII (TOPOISOMERASE II)Encodes a topoisomerase II that is highly expressed in young seedlings. The protein is localized in the nucleus and gene expression levels are increased in proliferative tissues.O.I.C.G.H.G.
9.199.118.9At5g23420832408HMGB6Encodes HMGB6, a protein belonging to the subgroup of HMGB (high mobility group B) proteins. Localized in the nucleus. Binds to supercoiled DNA in vitro. HMGB6 is phosphorylated by protein kinase CK2alpha within its acidic C-terminal domain.O.I.C.G.H.G.
8.999.014.3At5g49500835010signal recognition particle 54 kDa protein 2 / SRP54 (SRP-54B)F:7S RNA binding, mRNA binding, GTP binding;P:SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition, SRP-dependent cotranslational protein targeting to membrane;C:signal recognition particle, signal recognition particle, endoplasmic reticulum targeting;BOAMFPO.I.C.G.H.G.
8.999.08.8At2g33560817921spindle checkpoint protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOO.I.C.G.H.G.
8.899.065.8At5g10400830904histone H3F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPOO.I.C.G.H.G.
8.899.018.5At2g29890817539VLN1 (VILLIN-LIKE 1)Encodes a ubiquitously expressed villin-like protein, whose mRNA may be alternatively processed. Villin belongs to a superfamily of actin binding proteins called the villin/gelsolin family. Animal villins are involved in actin binding. VLN1 protein co-localizes with actin filaments in several assays. VLN1 binds and bundles F-actin in a calcium-independent manner. It does not nucleate, cap or sever actin filaments and it stabilizes actin filaments, protecting them from ADF-mediated depolymerization.O.I.C.G.H.G.
8.899.013.7At5g46880834733HB-7 (HOMEOBOX-7)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;MPFOBO.I.C.G.H.G.
8.799.089.0At5g47500834800pectinesterase family proteinF:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO.I.C.G.H.G.
8.799.070.9At3g56370824804leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
8.799.059.1At1g02730839467ATCSLD5Encodes a gene similar to cellulose synthase. Knock-out mutant has reduced growth, reduced xylan level and reduced xylan synthase activity in stems.O.I.C.G.H.G.
8.799.042.1At4g15830827264bindingF:binding;P:biological_process unknown;C:cellular_component unknown;MPOFO.I.C.G.H.G.
8.799.029.8At1g10230837562ASK18 (ARABIDOPSIS SKP1-LIKE 18)F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:unknown;MPOFVO.I.C.G.H.G.



Back to the CoP portal site

Back to the KAGIANA project homepage