CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID -

Assay name E-ATMX-19-raw-cel-1375547513

GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
132.2 99.9 105.3 At3g21890 821744 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:response to UV-B, regulation of transcription;C:intracellular;PO O.I. C.G. H.G.
110.9 99.9 60.4 At4g10390 826631 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:response to wounding;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
57.1 99.8 387.5 At2g06050 815160 OPR3 (OPDA-REDUCTASE 3) Encodes a 12-oxophytodienoate reductase that is required for jasmonate biosynthesis. Mutants are male sterile and defective in pollen dehiscence. O.I. C.G. H.G.
53.0 99.8 20.7 At1g01520 839337 myb family transcription factor F:transcription factor activity, DNA binding;P:response to salt stress, regulation of transcription, DNA-dependent;C:unknown;POM O.I. C.G. H.G.
48.2 99.8 38.1 At2g40230 818615 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFBO O.I. C.G. H.G.
38.1 99.8 305.3 At1g65490 842861 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
34.9 99.7 56.3 At2g27420 817287 cysteine proteinase, putative F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:endomembrane system;MOPBVAF O.I. C.G. H.G.
33.6 99.7 60.7 At5g42760 834285 - F:unknown;P:biological_process unknown;C:cellular_component unknown;BOAPMF O.I. C.G. H.G.
33.0 99.7 235.1 At3g56290 824796 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
32.7 99.7 125.7 At1g17380 838310 JAZ5 (JASMONATE-ZIM-DOMAIN PROTEIN 5) F:molecular_function unknown;P:response to jasmonic acid stimulus;C:cellular_component unknown;P O.I. C.G. H.G.
32.4 99.7 38.1 At5g52320 835308 CYP96A4 member of CYP96A O.I. C.G. H.G.
31.1 99.7 223.5 At1g12240 837777 ATBETAFRUCT4 F:hydrolase activity, hydrolyzing O-glycosyl compounds, beta-fructofuranosidase activity;P:sucrose catabolic process, using beta-fructofuranosidase, carbohydrate metabolic process;C:vacuole, plant-type cell wall;BPFOMA O.I. C.G. H.G.
29.7 99.7 285.9 At2g33380 817901 RD20 (RESPONSIVE TO DESSICATION 20) Encodes a calcium binding protein whose mRNA is induced upon treatment with NaCl, ABA and in response to dessication. mRNA expression under drought conditions is apparent particularly in leaves and flowers. O.I. C.G. H.G.
28.9 99.7 55.7 At4g12000 826807 - F:unknown;P:response to oxidative stress;C:unknown;BOPMFA O.I. C.G. H.G.
28.6 99.7 229.0 At3g24500 822041 MBF1C (MULTIPROTEIN BRIDGING FACTOR 1C) One of three genes in A. thaliana encoding multiprotein bridging factor 1, a highly conserved transcriptional coactivator. May serve as a bridging factor between a bZIP factor and TBP. Its expression is specifically elevated in response to pathogen infection, salinity, drought, heat, hydrogen peroxide, and application of abscisic acid or salicylic acid. Constitutive expression enhances the tolerance of transgenic plants to various biotic and abiotic stresses. O.I. C.G. H.G.
25.4 99.6 303.4 At3g17800 821048 - mRNA level of the MEB5.2 gene (At3g17800) remains unchanged after cutting the inflorescence stem O.I. C.G. H.G.
24.8 99.6 4.8 At2g22710 816801 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
24.6 99.6 168.1 At4g37760 829932 SQE3 (squalene epoxidase 3) F:squalene monooxygenase activity;P:response to jasmonic acid stimulus, sterol biosynthetic process, response to wounding;C:endomembrane system, integral to membrane;BOFMPA O.I. C.G. H.G.
22.8 99.6 188.5 At1g72450 843577 JAZ6 (JASMONATE-ZIM-DOMAIN PROTEIN 6) JAZ6 transcript levels rise in response to a jasmonate stimulus and a GFP:JAZ6 fusion protein localizes to the nucleus. Application of jasmonate methyl ester to Arabidopsis roots reduces the levels of a JAZ6:GUS fusion protein, presumably by stimulating ubiquitin-proteasome-mediated degradation. O.I. C.G. H.G.
22.6 99.6 27.8 At1g60270 3767579 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
22.5 99.6 14.2 At5g45630 834603 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
21.9 99.6 193.8 At2g29450 817494 ATGSTU5 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 5) Encodes a member of the TAU glutathione S-transferase gene family. Gene expression is induced by exposure to auxin, pathogen and herbicides. Naming convention according to Wagner et al. (2002) O.I. C.G. H.G.
19.5 99.6 29.2 At2g36590 818232 ProT3 (PROLINE TRANSPORTER 3) Encodes a proline transporter with affinity for gly betaine, proline, and GABA. Protein is expressed in leaves, flowers and siliques but to a much lesser extent in roots. O.I. C.G. H.G.
18.3 99.5 172.3 At1g32900 840184 starch synthase, putative F:transferase activity, transferring glycosyl groups;P:biosynthetic process, glucan biosynthetic process;C:chloroplast;PBOAFM O.I. C.G. H.G.
18.2 99.5 80.8 At4g16490 827347 binding F:binding;P:biological_process unknown;C:unknown;PO O.I. C.G. H.G.
18.2 99.5 7.3 At3g63020 825477 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
18.0 99.5 96.9 At3g48460 824005 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:glycerol biosynthetic process, lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
17.8 99.5 39.4 At3g17130 820970 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:unknown;C:endomembrane system;P O.I. C.G. H.G.
17.7 99.5 81.0 At5g24120 832477 SIGE (SIGMA FACTOR E) Encodes a specialized sigma factor that functions in regulation of plastid genes and is responsible for the light-dependent transcription at the psbD LRP. Activation of SIG5 is dependent upon blue light and mediated by cryptochromes. O.I. C.G. H.G.
17.4 99.5 139.0 At5g24150 832480 SQP1 squalene monooxygenase gene homolog O.I. C.G. H.G.
17.0 99.5 21.3 At1g33260 840220 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
16.6 99.5 59.5 At5g62570 836377 calmodulin-binding protein F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
16.5 99.5 119.0 At1g02820 839304 late embryogenesis abundant 3 family protein / LEA3 family protein F:molecular_function unknown;P:embryonic development, response to stress;C:unknown;P O.I. C.G. H.G.
16.4 99.5 105.3 At4g01080 827902 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;PF O.I. C.G. H.G.
16.4 99.5 7.4 At2g35075 818073 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
16.3 99.5 3.8 At3g44080 823526 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
16.1 99.5 214.1 At2g38210 818400 PDX1L4 (PUTATIVE PDX1-LIKE PROTEIN 4) F:unknown;P:response to ethylene stimulus, response to stress;C:plasma membrane;BOAFPM O.I. C.G. H.G.
15.9 99.5 3.9 At2g01200 814648 IAA32 (INDOLE-3-ACETIC ACID INDUCIBLE 32) Belongs to auxin inducible gene family. O.I. C.G. H.G.
15.8 99.5 29.0 At1g11960 837748 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;FPMOB O.I. C.G. H.G.
15.4 99.5 19.5 At1g51440 841569 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:chloroplast;POFBMV O.I. C.G. H.G.
15.4 99.5 17.7 At3g56260 824792 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO O.I. C.G. H.G.
15.2 99.4 27.9 At2g15020 815991 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
14.9 99.4 37.3 At1g76570 843990 chlorophyll A-B binding family protein F:chlorophyll binding;P:response to blue light, response to far red light, photosynthesis;C:light-harvesting complex, chloroplast, membrane;POM O.I. C.G. H.G.
14.8 99.4 672.2 At4g35090 829661 CAT2 (CATALASE 2) Encodes a peroxisomal catalase, highly expressed in bolts and leaves. mRNA expression patterns show circadian regulation with mRNA levels being high in the subjective early morning. Loss of function mutations have increased H2O2 levels and increased H2O2 sensitivity. Mutants accumulate more toxic ions yet show decreased sensitivity to Li+. This decreased sensitivity is most likely due to an insensitivity to ethylene. Note that in Queval et al. (2007) Plant Journal, 52(4):640, SALK_057998 is named as cat2-1, SALK_076998 is named as cat2-2; in Bueso et al. (2007) Plant Journal, 52(6):1052, SALK_076998 is named as cat2-1. TAIR has adopted the nomenclature consistent with that in Bueso et al. (2007) after consultation with the authors: SALK_076998 (cat2-1), SALK_057998 (cat2-2). O.I. C.G. H.G.
14.1 99.4 16.5 At1g74390 843780 exonuclease family protein F:exonuclease activity, nucleic acid binding;P:unknown;C:intracellular;BOP O.I. C.G. H.G.
13.9 99.4 101.0 At1g32640 840158 MYC2 Encodes a MYC-related transcriptional activator with a typical DNA binding domain of a basic helix-loop-helix leucine zipper motif. Binds to an extended G-Box promoter motif. Its transcription is induced by dehydration stress and ABA treatment. Negative regulator of blue light�mediated photomorphogenic growth and blue and far-red-light�regulated gene expression. Positive regulator of lateral root formation. Regulates diverse JA-dependent functions. Negatively regulates Trp metabolism and biosynthesis of Trp-derived secondary metabolites. Positively regulates flavonoid biosynthesis, resistance to insects, and response to oxidative stress. Regulates other transcription factors, and negatively regulates its own expression. O.I. C.G. H.G.
13.8 99.4 271.6 At4g26850 828792 VTC2 (vitamin c defective 2) Encodes a novel protein involved in ascorbate biosynthesis, which was shown to catalyze the transfer of GMP from GDP-galactose to a variety of hexose-1-phosphate acceptors. Recessive mutation has a reduced amount of vitamin C, lower level of non-photochemical quenching, and reduced rate of conversion of violaxanthin to zeaxanthin in high light. O.I. C.G. H.G.
13.4 99.4 87.4 At2g46830 819296 CCA1 (CIRCADIAN CLOCK ASSOCIATED 1) Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis. O.I. C.G. H.G.
13.4 99.4 40.3 At3g14200 820637 DNAJ heat shock N-terminal domain-containing protein F:heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
13.0 99.4 49.8 At5g56980 835800 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PM O.I. C.G. H.G.
12.7 99.3 366.0 At1g09070 837428 SRC2 (SOYBEAN GENE REGULATED BY COLD-2) SRC2 specifically binds the peptide PIEPPPHH, and moves from ER to a vacuole fraction where it gets internalized. Involved in Protein Storage Vacuole targeting. O.I. C.G. H.G.
12.6 99.3 52.3 At5g52570 835334 BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2) Converts β-carotene to zeaxanthin via cryptoxanthin. O.I. C.G. H.G.
12.5 99.3 24.2 At5g44050 834428 MATE efflux family protein F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA O.I. C.G. H.G.
11.8 99.3 31.6 At1g23205 838929 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
11.7 99.3 3.3 At3g29600 822625 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
11.5 99.3 135.3 At1g61890 842485 MATE efflux family protein F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA O.I. C.G. H.G.
11.4 99.3 4.0 At4g11930 826800 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
10.9 99.2 3.8 At3g18180 821345 transferase, transferring glycosyl groups F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;PMOBF O.I. C.G. H.G.
10.8 99.2 56.2 At1g70580 843395 AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2) Similar to glutamate-glyoxylate transaminase enzyme encoded by AOAT1 O.I. C.G. H.G.
10.7 99.2 422.5 At2g28190 817365 CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) Encodes a chloroplastic copper/zinc superoxide dismutase CSD2 that can detoxify superoxide radicals. Its expression is affected by miR398-directed mRNA cleavage. O.I. C.G. H.G.
10.7 99.2 11.6 At3g30460 822758 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB O.I. C.G. H.G.
10.5 99.2 46.9 At3g52720 824438 ACA1 (ALPHA CARBONIC ANHYDRASE 1) F:carbonate dehydratase activity, zinc ion binding;P:one-carbon compound metabolic process;C:endomembrane system;MBPOF O.I. C.G. H.G.
10.5 99.2 9.3 At1g09950 837529 transcription factor-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
10.4 99.2 129.1 At1g22850 838890 - F:unknown;P:biological_process unknown;C:chloroplast;BOMPFA O.I. C.G. H.G.
10.3 99.2 164.1 At5g67300 836865 MYBR1 (MYB DOMAIN PROTEIN R1) Member of the R2R3 factor MYB gene family involved in mediating plant responses to a variety of abiotic stimiuli. O.I. C.G. H.G.
10.3 99.2 19.8 At1g19700 838558 BEL10 (BEL1-LIKE HOMEODOMAIN 10) Encodes a member of the BEL family of homeodomain proteins. Its interaction with PLP (PAS/LOV PROTEIN) is diminished by blue light. O.I. C.G. H.G.
10.2 99.2 530.3 At3g55800 824746 SBPASE (sedoheptulose-bisphosphatase) Encodes the chloroplast enzyme sedoheptulose-1,7-bisphosphatase (SBPase), involved in the carbon reduction of the Calvin cycle. Increase in SBPase activity in transgenic lines accumulate up to 50% more sucrose and starch than wild-type. O.I. C.G. H.G.
10.2 99.2 8.0 At2g40240 818616 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMF O.I. C.G. H.G.
10.1 99.2 87.9 At1g73480 843683 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:unknown;BOPMFVA O.I. C.G. H.G.
9.9 99.1 148.7 At5g35970 833589 DNA-binding protein, putative F:DNA binding;P:biological_process unknown;C:chloroplast, chloroplast envelope;BMOFPA O.I. C.G. H.G.
9.9 99.1 48.1 At4g00050 828175 UNE10 (unfertilized embryo sac 10) F:transcription factor activity, DNA binding;P:double fertilization forming a zygote and endosperm, regulation of transcription;C:nucleus;PMFO O.I. C.G. H.G.
9.8 99.1 41.4 At2g36630 818235 unknown protein F:unknown;P:N-terminal protein myristoylation;C:endomembrane system, integral to membrane;BOPA O.I. C.G. H.G.
9.7 99.1 4.5 At1g43040 840903 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P O.I. C.G. H.G.
9.6 99.1 99.7 At1g55960 842047 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MPO O.I. C.G. H.G.
9.5 99.1 153.2 At5g43850 834407 ARD4 F:acireductone dioxygenase [iron(II)-requiring] activity, metal ion binding;P:methionine salvage;C:cellular_component unknown;PBMFO O.I. C.G. H.G.
9.5 99.1 28.1 At5g62140 836334 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBO O.I. C.G. H.G.
9.4 99.1 350.8 At3g25760 822167 AOC1 (ALLENE OXIDE CYCLASE 1) encodes allene oxide cyclase. One of four genes in Arabidopsis that encode this enzyme, which catalyzes an essential step in jasmonic acid biosynthesis. Gene expression is induced during senescence, a process that involves jasmonic acid signalling pathway. O.I. C.G. H.G.
9.4 99.1 82.7 At2g22240 816757 MIPS2 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2) Referred to as MIPS1 in Mitsuhashi et al 2008. Myo-inositol-1-phosphate synthase isoform 2. Expressed in leaf, root and silique. Immunolocaliazation experiments with an antibody recognizing MIPS1, MIPS2, and MIPS3 showed endosperm localization. O.I. C.G. H.G.
9.4 99.1 44.7 At2g24540 816990 AFR (ATTENUATED FAR-RED RESPONSE) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFVA O.I. C.G. H.G.
9.3 99.1 3.2 At4g13880 827022 AtRLP48 (Receptor Like Protein 48) F:protein binding;P:signal transduction;C:endomembrane system;PMOBFAV O.I. C.G. H.G.
9.2 99.1 11.7 At5g52330 835309 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PFMO O.I. C.G. H.G.
9.1 99.1 22.9 At3g55640 824730 mitochondrial substrate carrier family protein F:transporter activity, binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, plasma membrane;MFPO O.I. C.G. H.G.
8.8 99.0 46.1 At1g20070 838596 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
8.8 99.0 2.1 At4g08880 826465 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
8.7 99.0 40.7 At2g23340 816866 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. O.I. C.G. H.G.
8.7 99.0** 34.7 At1g64500 842758 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;PMBOF O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
132.2	99.9	105.3	At3g21890	821744	zinc finger (B-box type) family protein	F:transcription factor activity, zinc ion binding;P:response to UV-B, regulation of transcription;C:intracellular;PO	O.I.	C.G.	H.G.
110.9	99.9	60.4	At4g10390	826631	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:response to wounding;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
57.1	99.8	387.5	At2g06050	815160	OPR3 (OPDA-REDUCTASE 3)	Encodes a 12-oxophytodienoate reductase that is required for jasmonate biosynthesis. Mutants are male sterile and defective in pollen dehiscence.	O.I.	C.G.	H.G.
53.0	99.8	20.7	At1g01520	839337	myb family transcription factor	F:transcription factor activity, DNA binding;P:response to salt stress, regulation of transcription, DNA-dependent;C:unknown;POM	O.I.	C.G.	H.G.
48.2	99.8	38.1	At2g40230	818615	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFBO	O.I.	C.G.	H.G.
38.1	99.8	305.3	At1g65490	842861	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
34.9	99.7	56.3	At2g27420	817287	cysteine proteinase, putative	F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:endomembrane system;MOPBVAF	O.I.	C.G.	H.G.
33.6	99.7	60.7	At5g42760	834285	-	F:unknown;P:biological_process unknown;C:cellular_component unknown;BOAPMF	O.I.	C.G.	H.G.
33.0	99.7	235.1	At3g56290	824796	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
32.7	99.7	125.7	At1g17380	838310	JAZ5 (JASMONATE-ZIM-DOMAIN PROTEIN 5)	F:molecular_function unknown;P:response to jasmonic acid stimulus;C:cellular_component unknown;P	O.I.	C.G.	H.G.
32.4	99.7	38.1	At5g52320	835308	CYP96A4	member of CYP96A	O.I.	C.G.	H.G.
31.1	99.7	223.5	At1g12240	837777	ATBETAFRUCT4	F:hydrolase activity, hydrolyzing O-glycosyl compounds, beta-fructofuranosidase activity;P:sucrose catabolic process, using beta-fructofuranosidase, carbohydrate metabolic process;C:vacuole, plant-type cell wall;BPFOMA	O.I.	C.G.	H.G.
29.7	99.7	285.9	At2g33380	817901	RD20 (RESPONSIVE TO DESSICATION 20)	Encodes a calcium binding protein whose mRNA is induced upon treatment with NaCl, ABA and in response to dessication. mRNA expression under drought conditions is apparent particularly in leaves and flowers.	O.I.	C.G.	H.G.
28.9	99.7	55.7	At4g12000	826807	-	F:unknown;P:response to oxidative stress;C:unknown;BOPMFA	O.I.	C.G.	H.G.
28.6	99.7	229.0	At3g24500	822041	MBF1C (MULTIPROTEIN BRIDGING FACTOR 1C)	One of three genes in A. thaliana encoding multiprotein bridging factor 1, a highly conserved transcriptional coactivator. May serve as a bridging factor between a bZIP factor and TBP. Its expression is specifically elevated in response to pathogen infection, salinity, drought, heat, hydrogen peroxide, and application of abscisic acid or salicylic acid. Constitutive expression enhances the tolerance of transgenic plants to various biotic and abiotic stresses.	O.I.	C.G.	H.G.
25.4	99.6	303.4	At3g17800	821048	-	mRNA level of the MEB5.2 gene (At3g17800) remains unchanged after cutting the inflorescence stem	O.I.	C.G.	H.G.
24.8	99.6	4.8	At2g22710	816801	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
24.6	99.6	168.1	At4g37760	829932	SQE3 (squalene epoxidase 3)	F:squalene monooxygenase activity;P:response to jasmonic acid stimulus, sterol biosynthetic process, response to wounding;C:endomembrane system, integral to membrane;BOFMPA	O.I.	C.G.	H.G.
22.8	99.6	188.5	At1g72450	843577	JAZ6 (JASMONATE-ZIM-DOMAIN PROTEIN 6)	JAZ6 transcript levels rise in response to a jasmonate stimulus and a GFP:JAZ6 fusion protein localizes to the nucleus. Application of jasmonate methyl ester to Arabidopsis roots reduces the levels of a JAZ6:GUS fusion protein, presumably by stimulating ubiquitin-proteasome-mediated degradation.	O.I.	C.G.	H.G.
22.6	99.6	27.8	At1g60270	3767579	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
22.5	99.6	14.2	At5g45630	834603	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
21.9	99.6	193.8	At2g29450	817494	ATGSTU5 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 5)	Encodes a member of the TAU glutathione S-transferase gene family. Gene expression is induced by exposure to auxin, pathogen and herbicides. Naming convention according to Wagner et al. (2002)	O.I.	C.G.	H.G.
19.5	99.6	29.2	At2g36590	818232	ProT3 (PROLINE TRANSPORTER 3)	Encodes a proline transporter with affinity for gly betaine, proline, and GABA. Protein is expressed in leaves, flowers and siliques but to a much lesser extent in roots.	O.I.	C.G.	H.G.
18.3	99.5	172.3	At1g32900	840184	starch synthase, putative	F:transferase activity, transferring glycosyl groups;P:biosynthetic process, glucan biosynthetic process;C:chloroplast;PBOAFM	O.I.	C.G.	H.G.
18.2	99.5	80.8	At4g16490	827347	binding	F:binding;P:biological_process unknown;C:unknown;PO	O.I.	C.G.	H.G.
18.2	99.5	7.3	At3g63020	825477	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
18.0	99.5	96.9	At3g48460	824005	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:glycerol biosynthetic process, lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
17.8	99.5	39.4	At3g17130	820970	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
17.7	99.5	81.0	At5g24120	832477	SIGE (SIGMA FACTOR E)	Encodes a specialized sigma factor that functions in regulation of plastid genes and is responsible for the light-dependent transcription at the psbD LRP. Activation of SIG5 is dependent upon blue light and mediated by cryptochromes.	O.I.	C.G.	H.G.
17.4	99.5	139.0	At5g24150	832480	SQP1	squalene monooxygenase gene homolog	O.I.	C.G.	H.G.
17.0	99.5	21.3	At1g33260	840220	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
16.6	99.5	59.5	At5g62570	836377	calmodulin-binding protein	F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
16.5	99.5	119.0	At1g02820	839304	late embryogenesis abundant 3 family protein / LEA3 family protein	F:molecular_function unknown;P:embryonic development, response to stress;C:unknown;P	O.I.	C.G.	H.G.
16.4	99.5	105.3	At4g01080	827902	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
16.4	99.5	7.4	At2g35075	818073	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
16.3	99.5	3.8	At3g44080	823526	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
16.1	99.5	214.1	At2g38210	818400	PDX1L4 (PUTATIVE PDX1-LIKE PROTEIN 4)	F:unknown;P:response to ethylene stimulus, response to stress;C:plasma membrane;BOAFPM	O.I.	C.G.	H.G.
15.9	99.5	3.9	At2g01200	814648	IAA32 (INDOLE-3-ACETIC ACID INDUCIBLE 32)	Belongs to auxin inducible gene family.	O.I.	C.G.	H.G.
15.8	99.5	29.0	At1g11960	837748	-	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;FPMOB	O.I.	C.G.	H.G.
15.4	99.5	19.5	At1g51440	841569	lipase class 3 family protein	F:triacylglycerol lipase activity;P:lipid metabolic process;C:chloroplast;POFBMV	O.I.	C.G.	H.G.
15.4	99.5	17.7	At3g56260	824792	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO	O.I.	C.G.	H.G.
15.2	99.4	27.9	At2g15020	815991	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
14.9	99.4	37.3	At1g76570	843990	chlorophyll A-B binding family protein	F:chlorophyll binding;P:response to blue light, response to far red light, photosynthesis;C:light-harvesting complex, chloroplast, membrane;POM	O.I.	C.G.	H.G.
14.8	99.4	672.2	At4g35090	829661	CAT2 (CATALASE 2)	Encodes a peroxisomal catalase, highly expressed in bolts and leaves. mRNA expression patterns show circadian regulation with mRNA levels being high in the subjective early morning. Loss of function mutations have increased H2O2 levels and increased H2O2 sensitivity. Mutants accumulate more toxic ions yet show decreased sensitivity to Li+. This decreased sensitivity is most likely due to an insensitivity to ethylene. Note that in Queval et al. (2007) Plant Journal, 52(4):640, SALK_057998 is named as cat2-1, SALK_076998 is named as cat2-2; in Bueso et al. (2007) Plant Journal, 52(6):1052, SALK_076998 is named as cat2-1. TAIR has adopted the nomenclature consistent with that in Bueso et al. (2007) after consultation with the authors: SALK_076998 (cat2-1), SALK_057998 (cat2-2).	O.I.	C.G.	H.G.
14.1	99.4	16.5	At1g74390	843780	exonuclease family protein	F:exonuclease activity, nucleic acid binding;P:unknown;C:intracellular;BOP	O.I.	C.G.	H.G.
13.9	99.4	101.0	At1g32640	840158	MYC2	Encodes a MYC-related transcriptional activator with a typical DNA binding domain of a basic helix-loop-helix leucine zipper motif. Binds to an extended G-Box promoter motif. Its transcription is induced by dehydration stress and ABA treatment. Negative regulator of blue light�mediated photomorphogenic growth and blue and far-red-light�regulated gene expression. Positive regulator of lateral root formation. Regulates diverse JA-dependent functions. Negatively regulates Trp metabolism and biosynthesis of Trp-derived secondary metabolites. Positively regulates flavonoid biosynthesis, resistance to insects, and response to oxidative stress. Regulates other transcription factors, and negatively regulates its own expression.	O.I.	C.G.	H.G.
13.8	99.4	271.6	At4g26850	828792	VTC2 (vitamin c defective 2)	Encodes a novel protein involved in ascorbate biosynthesis, which was shown to catalyze the transfer of GMP from GDP-galactose to a variety of hexose-1-phosphate acceptors. Recessive mutation has a reduced amount of vitamin C, lower level of non-photochemical quenching, and reduced rate of conversion of violaxanthin to zeaxanthin in high light.	O.I.	C.G.	H.G.
13.4	99.4	87.4	At2g46830	819296	CCA1 (CIRCADIAN CLOCK ASSOCIATED 1)	Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis.	O.I.	C.G.	H.G.
13.4	99.4	40.3	At3g14200	820637	DNAJ heat shock N-terminal domain-containing protein	F:heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
13.0	99.4	49.8	At5g56980	835800	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PM	O.I.	C.G.	H.G.
12.7	99.3	366.0	At1g09070	837428	SRC2 (SOYBEAN GENE REGULATED BY COLD-2)	SRC2 specifically binds the peptide PIEPPPHH, and moves from ER to a vacuole fraction where it gets internalized. Involved in Protein Storage Vacuole targeting.	O.I.	C.G.	H.G.
12.6	99.3	52.3	At5g52570	835334	BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2)	Converts β-carotene to zeaxanthin via cryptoxanthin.	O.I.	C.G.	H.G.
12.5	99.3	24.2	At5g44050	834428	MATE efflux family protein	F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA	O.I.	C.G.	H.G.
11.8	99.3	31.6	At1g23205	838929	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
11.7	99.3	3.3	At3g29600	822625	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
11.5	99.3	135.3	At1g61890	842485	MATE efflux family protein	F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA	O.I.	C.G.	H.G.
11.4	99.3	4.0	At4g11930	826800	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
10.9	99.2	3.8	At3g18180	821345	transferase, transferring glycosyl groups	F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;PMOBF	O.I.	C.G.	H.G.
10.8	99.2	56.2	At1g70580	843395	AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2)	Similar to glutamate-glyoxylate transaminase enzyme encoded by AOAT1	O.I.	C.G.	H.G.
10.7	99.2	422.5	At2g28190	817365	CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2)	Encodes a chloroplastic copper/zinc superoxide dismutase CSD2 that can detoxify superoxide radicals. Its expression is affected by miR398-directed mRNA cleavage.	O.I.	C.G.	H.G.
10.7	99.2	11.6	At3g30460	822758	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB	O.I.	C.G.	H.G.
10.5	99.2	46.9	At3g52720	824438	ACA1 (ALPHA CARBONIC ANHYDRASE 1)	F:carbonate dehydratase activity, zinc ion binding;P:one-carbon compound metabolic process;C:endomembrane system;MBPOF	O.I.	C.G.	H.G.
10.5	99.2	9.3	At1g09950	837529	transcription factor-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
10.4	99.2	129.1	At1g22850	838890	-	F:unknown;P:biological_process unknown;C:chloroplast;BOMPFA	O.I.	C.G.	H.G.
10.3	99.2	164.1	At5g67300	836865	MYBR1 (MYB DOMAIN PROTEIN R1)	Member of the R2R3 factor MYB gene family involved in mediating plant responses to a variety of abiotic stimiuli.	O.I.	C.G.	H.G.
10.3	99.2	19.8	At1g19700	838558	BEL10 (BEL1-LIKE HOMEODOMAIN 10)	Encodes a member of the BEL family of homeodomain proteins. Its interaction with PLP (PAS/LOV PROTEIN) is diminished by blue light.	O.I.	C.G.	H.G.
10.2	99.2	530.3	At3g55800	824746	SBPASE (sedoheptulose-bisphosphatase)	Encodes the chloroplast enzyme sedoheptulose-1,7-bisphosphatase (SBPase), involved in the carbon reduction of the Calvin cycle. Increase in SBPase activity in transgenic lines accumulate up to 50% more sucrose and starch than wild-type.	O.I.	C.G.	H.G.
10.2	99.2	8.0	At2g40240	818616	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMF	O.I.	C.G.	H.G.
10.1	99.2	87.9	At1g73480	843683	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:unknown;BOPMFVA	O.I.	C.G.	H.G.
9.9	99.1	148.7	At5g35970	833589	DNA-binding protein, putative	F:DNA binding;P:biological_process unknown;C:chloroplast, chloroplast envelope;BMOFPA	O.I.	C.G.	H.G.
9.9	99.1	48.1	At4g00050	828175	UNE10 (unfertilized embryo sac 10)	F:transcription factor activity, DNA binding;P:double fertilization forming a zygote and endosperm, regulation of transcription;C:nucleus;PMFO	O.I.	C.G.	H.G.
9.8	99.1	41.4	At2g36630	818235	unknown protein	F:unknown;P:N-terminal protein myristoylation;C:endomembrane system, integral to membrane;BOPA	O.I.	C.G.	H.G.
9.7	99.1	4.5	At1g43040	840903	auxin-responsive protein, putative	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P	O.I.	C.G.	H.G.
9.6	99.1	99.7	At1g55960	842047	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;MPO	O.I.	C.G.	H.G.
9.5	99.1	153.2	At5g43850	834407	ARD4	F:acireductone dioxygenase [iron(II)-requiring] activity, metal ion binding;P:methionine salvage;C:cellular_component unknown;PBMFO	O.I.	C.G.	H.G.
9.5	99.1	28.1	At5g62140	836334	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBO	O.I.	C.G.	H.G.
9.4	99.1	350.8	At3g25760	822167	AOC1 (ALLENE OXIDE CYCLASE 1)	encodes allene oxide cyclase. One of four genes in Arabidopsis that encode this enzyme, which catalyzes an essential step in jasmonic acid biosynthesis. Gene expression is induced during senescence, a process that involves jasmonic acid signalling pathway.	O.I.	C.G.	H.G.
9.4	99.1	82.7	At2g22240	816757	MIPS2 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2)	** Referred to as MIPS1 in Mitsuhashi et al 2008. Myo-inositol-1-phosphate synthase isoform 2. Expressed in leaf, root and silique. Immunolocaliazation experiments with an antibody recognizing MIPS1, MIPS2, and MIPS3 showed endosperm localization.	O.I.	C.G.	H.G.
9.4	99.1	44.7	At2g24540	816990	AFR (ATTENUATED FAR-RED RESPONSE)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFVA	O.I.	C.G.	H.G.
9.3	99.1	3.2	At4g13880	827022	AtRLP48 (Receptor Like Protein 48)	F:protein binding;P:signal transduction;C:endomembrane system;PMOBFAV	O.I.	C.G.	H.G.
9.2	99.1	11.7	At5g52330	835309	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PFMO	O.I.	C.G.	H.G.
9.1	99.1	22.9	At3g55640	824730	mitochondrial substrate carrier family protein	F:transporter activity, binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, plasma membrane;MFPO	O.I.	C.G.	H.G.
8.8	99.0	46.1	At1g20070	838596	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
8.8	99.0	2.1	At4g08880	826465	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
8.7	99.0	40.7	At2g23340	816866	AP2 domain-containing transcription factor, putative	encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.	O.I.	C.G.	H.G.
8.7	99.0	34.7	At1g64500	842758	glutaredoxin family protein	F:electron carrier activity, protein disulfide oxidoreductase activity;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;PMBOF	O.I.	C.G.	H.G.

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GSM ID	-
Assay name	E-ATMX-19-raw-cel-1375547513
GSE experiment	-

Microarray experiments to specifically-expressed genes

GSM ID - Assay name E-ATMX-19-raw-cel-1375547513 GSE experiment -

GSM ID -

Assay name E-ATMX-19-raw-cel-1375547513

GSE experiment -