CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID -

Assay name E-ATMX-13-raw-cel-1556149935

GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
279.0 100.0 207.0 At2g17820 816291 ATHK1 (histidine kinase 1) Encodes a member of the histidine kinase family. O.I. C.G. H.G.
197.5 100.0 186.2 At1g36240 840530 60S ribosomal protein L30 (RPL30A) F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit;MOAFPB O.I. C.G. H.G.
149.8 99.9 128.4 At5g40040 834001 60S acidic ribosomal protein P2 (RPP2E) F:structural constituent of ribosome;P:translational elongation;C:cytosolic ribosome, ribosome;MPFOAB O.I. C.G. H.G.
148.2 99.9 100.4 At1g59930 842287 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
145.5 99.9 182.4 At2g16570 816156 ATASE1 (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 1) Amidophosphoribosyltransferase (ATase: EC 2.4.2.14) is a key enzyme in the pathway of purine nucleotide biosynthesis O.I. C.G. H.G.
125.3 99.9 86.9 At1g51380 841562 eukaryotic translation initiation factor 4A, putative / eIF-4A, putative F:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
119.3 99.9 149.8 At2g20800 816609 NDB4 (NAD(P)H dehydrogenase B4) F:NADH dehydrogenase activity;P:unknown;C:extrinsic to mitochondrial inner membrane, mitochondrion, plastid;BOFPAM O.I. C.G. H.G.
116.8 99.9 47.9 At2g43140 818916 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOBF O.I. C.G. H.G.
101.2 99.9 69.1 At2g15790 816074 SQN (SQUINT) SQN encodes the Arabidopsis homolog of cyclophilin 40 (CyP40). It is specifically required for the vegetative but not the reproductive maturation of the shoot. O.I. C.G. H.G.
100.2 99.9 131.8 At1g33940 840291 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO O.I. C.G. H.G.
93.8 99.9 48.6 At1g22090 838814 emb2204 (embryo defective 2204) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;P O.I. C.G. H.G.
82.3 99.9 173.9 At2g19990 816518 PR-1-LIKE (PATHOGENESIS-RELATED PROTEIN-1-LIKE) Encodes a PR-1-like protein homolog that is differentially expressed in resistant compared to susceptible cultivars by powdery mildew infection. The deduced amino acid sequence has 24 amino acids comprising the signal peptide and 140 amino acids of the mature peptide (15 kDa). Northern blot analysis showed accumulation of the corresponding mRNA 12 h after inoculation of resistant barley cultivars with Erysiphe graminis. Though the Genbank record for the cDNA associated to this gene model is called 'PR-1', the sequence actually corresponds to PR-1-like. Expression of this gene is not salicylic-acid responsive. O.I. C.G. H.G.
74.1 99.9 106.5 At5g24840 832553 tRNA (guanine-N7-)-methyltransferase F:tRNA (guanine-N7-)-methyltransferase activity;P:acetate biosynthetic process from carbon monoxide, methanol oxidation, tRNA modification;C:cellular_component unknown;BOMFP O.I. C.G. H.G.
70.0 99.9 56.2 At1g67120 843032 ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / transcription factor binding F:nucleoside-triphosphatase activity, ATPase activity, transcription factor binding, nucleotide binding, ATP binding;P:regulation of transcription, DNA-dependent, regulation of protein complex assembly;C:chloroplast envelope;OMBFPVA O.I. C.G. H.G.
69.9 99.9 74.9 At2g42710 818871 ribosomal protein L1 family protein F:structural constituent of ribosome, RNA binding;P:translation, RNA processing;C:ribosome, intracellular, large ribosomal subunit;BOMFPAV O.I. C.G. H.G.
67.0 99.8 27.1 At2g39820 818569 eukaryotic translation initiation factor 6, putative / eIF-6, putative F:ribosome binding, translation initiation factor activity;P:translational initiation, mature ribosome assembly;C:cellular_component unknown;AOMFP O.I. C.G. H.G.
66.5 99.8 147.8 At3g27400 822361 pectate lyase family protein F:pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFO O.I. C.G. H.G.
64.7 99.8 111.7 At2g41480 818746 electron carrier/ heme binding / peroxidase F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:unknown;POFBM O.I. C.G. H.G.
62.1 99.8 67.8 At3g16870 820942 zinc finger (GATA type) family protein F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;FPMO O.I. C.G. H.G.
61.5 99.8 46.0 At2g43650 818967 EMB2777 (EMBRYO DEFECTIVE 2777) F:molecular_function unknown;P:unknown;C:unknown;MOBFPVA O.I. C.G. H.G.
60.0 99.8 87.0 At2g44830 819092 protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane, nucleus;MOPFBVA O.I. C.G. H.G.
56.1 99.8 133.1 At5g25190 832590 ethylene-responsive element-binding protein, putative encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11. O.I. C.G. H.G.
55.2 99.8 45.9 At1g52850 3767446 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
53.3 99.8 25.8 At5g10850 830952 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
50.5 99.8 61.8 At1g33450 840238 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
50.4 99.8 49.4 At1g07840 837299 leucine zipper factor-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPB O.I. C.G. H.G.
50.3 99.8 21.2 At3g23950 821978 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
49.7 99.8 88.2 At2g39220 818507 PLP6 (PATATIN-LIKE PROTEIN 6) F:nutrient reservoir activity;P:metabolic process, lipid metabolic process;C:unknown;PBOMF O.I. C.G. H.G.
49.4 99.8 99.8 At2g45860 819194 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
48.4 99.8 55.0 At5g61480 836269 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
48.1 99.8 43.4 At1g36180 840522 ACC2 (ACETYL-COA CARBOXYLASE 2) acetyl-CoA carboxylase 2 (ACC2) O.I. C.G. H.G.
47.3 99.8 83.5 At4g25530 828658 FWA Encodes a homeodomain-containing transcription factor that controls flowering. FWA is silenced in wild type plants and reverse of the imprinted silencing causes a late flowering phenotype. FWA gene contains two tandem repeats around the transcription start site that are necessary and sufficient for silencing via DNA methylation. O.I. C.G. H.G.
47.2 99.8 86.0 At2g16440 816142 DNA replication licensing factor, putative F:nucleoside-triphosphatase activity, DNA-dependent ATPase activity, DNA binding, nucleotide binding, ATP binding;P:DNA replication initiation, DNA replication;C:nucleus, chloroplast;MOFPBAV O.I. C.G. H.G.
46.5 99.8 130.3 At2g04000 814926 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
46.1 99.8 90.0 At1g23410 838949 ubiquitin extension protein, putative / 40S ribosomal protein S27A (RPS27aA) F:protein binding, structural constituent of ribosome;P:protein ubiquitination during ubiquitin-dependent protein catabolic process, protein modification process, translation;C:cytosolic small ribosomal subunit, plasma membrane;MPOFVAB O.I. C.G. H.G.
44.7 99.8 251.1 At5g24660 832538 LSU2 (RESPONSE TO LOW SULFUR 2) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
44.0 99.8 87.7 At5g20600 832182 - F:molecular_function unknown;P:rRNA processing;C:preribosome, small subunit precursor;MFOPB O.I. C.G. H.G.
43.5 99.8 115.4 At1g71380 843479 ATCEL3 (ARABIDOPSIS THALIANA CELLULASE 3) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plasma membrane, plant-type cell wall;PBMOF O.I. C.G. H.G.
43.4 99.8 62.8 At1g67820 843108 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBV O.I. C.G. H.G.
43.3 99.8 40.2 At5g18750 831993 DNAJ heat shock N-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMPFAV O.I. C.G. H.G.
43.0 99.8 23.1 At5g08600 830761 U3 ribonucleoprotein (Utp) family protein F:molecular_function unknown;P:rRNA processing;C:small-subunit processome;OMFBPVA O.I. C.G. H.G.
42.7 99.8 126.6 At3g46940 823847 deoxyuridine 5'-triphosphate nucleotidohydrolase family F:hydrolase activity, dUTP diphosphatase activity;P:2'-deoxyribonucleotide metabolic process, dUTP metabolic process;C:cellular_component unknown;BOVMFPA O.I. C.G. H.G.
41.3 99.8 230.7 At2g44450 819052 BGLU15 (BETA GLUCOSIDASE 15) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plant-type cell wall;BOPMFA O.I. C.G. H.G.
41.0 99.8 11.6 At4g16030 827287 structural constituent of ribosome F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MOFP O.I. C.G. H.G.
40.9 99.8 25.2 At1g50400 841462 porin family protein F:voltage-gated anion channel activity;P:anion transport;C:mitochondrial outer membrane;MFOP O.I. C.G. H.G.
40.8 99.8 64.4 At2g16780 816179 MSI2 (MULTICOPY SUPPRESSOR OF IRA1 2) Encodes a WD-40 repeat protein similar to yeast MSI1. O.I. C.G. H.G.
39.9 99.8 244.2 At2g44860 819095 60S ribosomal protein L24, putative F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, nucleolus;MOAFPB O.I. C.G. H.G.
39.6 99.8 37.4 At1g68470 843176 exostosin family protein F:catalytic activity;P:biological_process unknown;C:membrane;POM O.I. C.G. H.G.
39.0 99.8 321.2 At3g16780 820931 60S ribosomal protein L19 (RPL19B) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, plasma membrane;MAOFP O.I. C.G. H.G.
39.0 99.8 151.9 At5g12110 831084 elongation factor 1B alpha-subunit 1 (eEF1Balpha1) F:translation elongation factor activity;P:translational elongation;C:eukaryotic translation elongation factor 1 complex;MOPF O.I. C.G. H.G.
38.7 99.8 23.5 At2g03040 814833 transmembrane protein-related F:unknown;P:transport;C:integral to membrane;MPOF O.I. C.G. H.G.
38.1 99.8 186.8 At5g10390 830903 histone H3 F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPO O.I. C.G. H.G.
38.0 99.8 14.3 At3g48130 3769680 - ribosomal protein L13 homolog O.I. C.G. H.G.
37.6 99.7 98.8 At3g16810 820934 APUM24 (Arabidopsis Pumilio 24) F:RNA binding, binding;P:unknown;C:nucleolus;MFPOB O.I. C.G. H.G.
36.9 99.7 12.8 At1g13330 837893 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFAPV O.I. C.G. H.G.
36.7 99.7 17.7 At1g44510 3767344 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
36.5 99.7 117.9 At5g25780 832647 EIF3B-2 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B-2) member of eIF3b - eukaryotic initiation factor 3b O.I. C.G. H.G.
36.2 99.7 101.8 At4g12110 826819 SMO1-1 (STEROL-4ALPHA-METHYL OXIDASE 1-1) Encodes a member of the SMO1 family of sterol 4alpha-methyl oxidases. More specifically functions as a 4,4-dimethyl-9beta,19-cyclopropylsterol-4alpha- methyl oxidase. O.I. C.G. H.G.
35.8 99.7 9.6 At1g05370 837038 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FPMO O.I. C.G. H.G.
35.7 99.7 139.6 At1g06220 837131 MEE5 (MATERNAL EFFECT EMBRYO ARREST 5) Encodes a protein with similarity to splicing factor Snu114. Snu114 is thought to be involved in activation of the splicosome. Loss of GFA1 function results in reduced female fertility. Approximately 50% of ovules abort due to defects in the female gametophyte. In mutant gametophytes antipodal cells express egg cell markers suggesting a defect in specification of cell fate.GFA1 is also required to restrict the expression of LIS. O.I. C.G. H.G.
35.7 99.7 37.1 At1g23100 838918 10 kDa chaperonin, putative F:ATP binding;P:protein folding;C:mitochondrion;BOMPFV O.I. C.G. H.G.
35.5 99.7 53.8 At4g02400 828039 - F:molecular_function unknown;P:rRNA processing;C:small-subunit processome;MOFBPVA O.I. C.G. H.G.
34.8 99.7 159.4 At2g01610 814690 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
34.7 99.7 29.8 At5g25800 832649 exonuclease family protein F:exonuclease activity, nucleic acid binding;P:unknown;C:intracellular;MFOPBV O.I. C.G. H.G.
34.6 99.7 183.1 At1g52930 841726 brix domain-containing protein F:unknown;P:unknown;C:cellular_component unknown;MFOP O.I. C.G. H.G.
34.4 99.7 65.6 At2g39795 818565 mitochondrial glycoprotein family protein / MAM33 family protein F:unknown;P:unknown;C:mitochondrion, mitochondrial matrix;PFOMB O.I. C.G. H.G.
34.2 99.7 22.3 At1g59540 842245 ZCF125 Encodes a kinesin-like protein. O.I. C.G. H.G.
33.6 99.7 27.1 At5g11410 831012 protein kinase family protein F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVA O.I. C.G. H.G.
33.5 99.7 24.8 At1g36190 3766981 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
33.3 99.7 27.8 At3g20990 3768792 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
32.6 99.7 78.1 At1g12270 837781 stress-inducible protein, putative F:binding;P:response to stress;C:unknown;OMBPFAV O.I. C.G. H.G.
32.3 99.7 150.5 At2g42740 818874 RPL16A encodes a cytosolic ribosomal protein L16, which is a constituent of 60S large ribosomal complex. Gene is expressed in root stele and anthers and expression is induced by auxin treatment. O.I. C.G. H.G.
32.3 99.7 28.2 At2g38970 818482 zinc finger (C3HC4-type RING finger) family protein F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;MBOPFAV O.I. C.G. H.G.
32.2 99.7 88.2 At1g42440 840848 - F:molecular_function unknown;P:ribosome biogenesis;C:nucleus;MOFBPV O.I. C.G. H.G.
32.1 99.7 54.9 At3g16840 820937 ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding F:helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity;P:biological_process unknown;C:cellular_component unknown;MOBFPAV O.I. C.G. H.G.
31.6 99.7 128.1 At2g28510 817399 Dof-type zinc finger domain-containing protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleolus;POMFB O.I. C.G. H.G.
31.6 99.7 16.0 At5g09840 830844 unknown protein F:unknown;P:unknown;C:mitochondrion;PMFOB O.I. C.G. H.G.
31.2 99.7 15.8 At2g01660 814695 PDLP6 (PLASMODESMATA-LOCATED PROTEIN 6) Encodes a plasmodesmal protein that may be involved in the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain. O.I. C.G. H.G.
31.1 99.7 20.1 At2g38720 818454 MAP65-5 (MICROTUBULE-ASSOCIATED PROTEIN 65-5) F:microtubule binding;P:microtubule polymerization, anaphase;C:cortical microtubule, microtubule, preprophase band, spindle, phragmoplast;MOBFPAV O.I. C.G. H.G.
31.0 99.7 93.8 At4g20020 827747 unknown protein F:unknown;P:unknown;C:unknown;MBOPFVA O.I. C.G. H.G.
30.9 99.7 241.8 At2g39700 818553 ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4) putative expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. O.I. C.G. H.G.
30.1 99.7 12.9 At1g45100 841077 polyadenylate-binding protein, putative / PABP, putative F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MFPOB O.I. C.G. H.G.
29.1 99.7 45.3 At1g60850 842377 ATRPAC42 F:DNA-directed RNA polymerase activity, protein dimerization activity, DNA binding;P:transcription;C:nucleolus;OMFAP O.I. C.G. H.G.
29.0 99.7 204.4 At2g39210 818506 nodulin family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBPFMA O.I. C.G. H.G.
29.0 99.7 119.3 At1g51730 841598 RWD domain-containing protein F:unknown;P:biological_process unknown;C:cellular_component unknown;MFOPB O.I. C.G. H.G.
29.0 99.7 96.2 At1g42470 840851 patched family protein F:hedgehog receptor activity;P:unknown;C:plasma membrane, membrane;MOBFPA O.I. C.G. H.G.
28.7 99.7 34.6 At1g06450 837157 CCR4-NOT transcription complex protein, putative F:ribonuclease activity, nucleic acid binding;P:RNA modification;C:nucleus;MPOF O.I. C.G. H.G.
28.7 99.7 27.0 At5g12220 831096 las1-like family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP O.I. C.G. H.G.
28.4 99.7 56.5 At2g20940 816628 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, plastid;MPFO O.I. C.G. H.G.
28.3 99.7 73.6 At3g48100 823965 ARR5 (ARABIDOPSIS RESPONSE REGULATOR 5) Encodes a transcription repressor that mediates a negative feedback loop in cytokinin signalling. ARR5 expression is upregulated by Class I KNOX genes. Arr5 protein is stabilized by cytokinin in a two-component phosphorelay. O.I. C.G. H.G.
28.2 99.7 77.4 At3g27360 822357 histone H3 F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPO O.I. C.G. H.G.
28.0 99.7 75.2 At5g06720 830561 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOMV O.I. C.G. H.G.
27.9 99.7 34.6 At1g43840 3767325 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
27.8 99.7 22.2 At2g07140 815283 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
27.7 99.7 96.7 At1g15420 838113 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBV O.I. C.G. H.G.
27.5 99.7 29.4 At5g20550 832177 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:flavonoid biosynthetic process;C:cellular_component unknown;POBFM O.I. C.G. H.G.
27.0 99.7 12.8 At2g40530 818648 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
26.6 99.7 116.1 At5g18620 831980 CHR17 (CHROMATIN REMODELING FACTOR17) F:in 7 functions;P:ATP-dependent chromatin remodeling, chromatin remodeling;C:nucleus, chromatin remodeling complex;MOFBPVA O.I. C.G. H.G.
26.6 99.7 19.1 At1g55610 842010 BRL1 (BRI 1 LIKE) mutant has Altered vascular cell differentiation; LRR Receptor Kinase O.I. C.G. H.G.
26.5 99.7 21.8 At4g23720 828472 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
279.0	100.0	207.0	At2g17820	816291	ATHK1 (histidine kinase 1)	Encodes a member of the histidine kinase family.	O.I.	C.G.	H.G.
197.5	100.0	186.2	At1g36240	840530	60S ribosomal protein L30 (RPL30A)	F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit;MOAFPB	O.I.	C.G.	H.G.
149.8	99.9	128.4	At5g40040	834001	60S acidic ribosomal protein P2 (RPP2E)	F:structural constituent of ribosome;P:translational elongation;C:cytosolic ribosome, ribosome;MPFOAB	O.I.	C.G.	H.G.
148.2	99.9	100.4	At1g59930	842287	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
145.5	99.9	182.4	At2g16570	816156	ATASE1 (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 1)	Amidophosphoribosyltransferase (ATase: EC 2.4.2.14) is a key enzyme in the pathway of purine nucleotide biosynthesis	O.I.	C.G.	H.G.
125.3	99.9	86.9	At1g51380	841562	eukaryotic translation initiation factor 4A, putative / eIF-4A, putative	F:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
119.3	99.9	149.8	At2g20800	816609	NDB4 (NAD(P)H dehydrogenase B4)	F:NADH dehydrogenase activity;P:unknown;C:extrinsic to mitochondrial inner membrane, mitochondrion, plastid;BOFPAM	O.I.	C.G.	H.G.
116.8	99.9	47.9	At2g43140	818916	DNA binding / transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOBF	O.I.	C.G.	H.G.
101.2	99.9	69.1	At2g15790	816074	SQN (SQUINT)	SQN encodes the Arabidopsis homolog of cyclophilin 40 (CyP40). It is specifically required for the vegetative but not the reproductive maturation of the shoot.	O.I.	C.G.	H.G.
100.2	99.9	131.8	At1g33940	840291	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
93.8	99.9	48.6	At1g22090	838814	emb2204 (embryo defective 2204)	F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;P	O.I.	C.G.	H.G.
82.3	99.9	173.9	At2g19990	816518	PR-1-LIKE (PATHOGENESIS-RELATED PROTEIN-1-LIKE)	Encodes a PR-1-like protein homolog that is differentially expressed in resistant compared to susceptible cultivars by powdery mildew infection. The deduced amino acid sequence has 24 amino acids comprising the signal peptide and 140 amino acids of the mature peptide (15 kDa). Northern blot analysis showed accumulation of the corresponding mRNA 12 h after inoculation of resistant barley cultivars with Erysiphe graminis. Though the Genbank record for the cDNA associated to this gene model is called 'PR-1', the sequence actually corresponds to PR-1-like. Expression of this gene is not salicylic-acid responsive.	O.I.	C.G.	H.G.
74.1	99.9	106.5	At5g24840	832553	tRNA (guanine-N7-)-methyltransferase	F:tRNA (guanine-N7-)-methyltransferase activity;P:acetate biosynthetic process from carbon monoxide, methanol oxidation, tRNA modification;C:cellular_component unknown;BOMFP	O.I.	C.G.	H.G.
70.0	99.9	56.2	At1g67120	843032	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / transcription factor binding	F:nucleoside-triphosphatase activity, ATPase activity, transcription factor binding, nucleotide binding, ATP binding;P:regulation of transcription, DNA-dependent, regulation of protein complex assembly;C:chloroplast envelope;OMBFPVA	O.I.	C.G.	H.G.
69.9	99.9	74.9	At2g42710	818871	ribosomal protein L1 family protein	F:structural constituent of ribosome, RNA binding;P:translation, RNA processing;C:ribosome, intracellular, large ribosomal subunit;BOMFPAV	O.I.	C.G.	H.G.
67.0	99.8	27.1	At2g39820	818569	eukaryotic translation initiation factor 6, putative / eIF-6, putative	F:ribosome binding, translation initiation factor activity;P:translational initiation, mature ribosome assembly;C:cellular_component unknown;AOMFP	O.I.	C.G.	H.G.
66.5	99.8	147.8	At3g27400	822361	pectate lyase family protein	F:pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFO	O.I.	C.G.	H.G.
64.7	99.8	111.7	At2g41480	818746	electron carrier/ heme binding / peroxidase	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:unknown;POFBM	O.I.	C.G.	H.G.
62.1	99.8	67.8	At3g16870	820942	zinc finger (GATA type) family protein	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;FPMO	O.I.	C.G.	H.G.
61.5	99.8	46.0	At2g43650	818967	EMB2777 (EMBRYO DEFECTIVE 2777)	F:molecular_function unknown;P:unknown;C:unknown;MOBFPVA	O.I.	C.G.	H.G.
60.0	99.8	87.0	At2g44830	819092	protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane, nucleus;MOPFBVA	O.I.	C.G.	H.G.
56.1	99.8	133.1	At5g25190	832590	ethylene-responsive element-binding protein, putative	encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.	O.I.	C.G.	H.G.
55.2	99.8	45.9	At1g52850	3767446	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
53.3	99.8	25.8	At5g10850	830952	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
50.5	99.8	61.8	At1g33450	840238	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
50.4	99.8	49.4	At1g07840	837299	leucine zipper factor-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPB	O.I.	C.G.	H.G.
50.3	99.8	21.2	At3g23950	821978	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
49.7	99.8	88.2	At2g39220	818507	PLP6 (PATATIN-LIKE PROTEIN 6)	F:nutrient reservoir activity;P:metabolic process, lipid metabolic process;C:unknown;PBOMF	O.I.	C.G.	H.G.
49.4	99.8	99.8	At2g45860	819194	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
48.4	99.8	55.0	At5g61480	836269	leucine-rich repeat transmembrane protein kinase, putative	F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
48.1	99.8	43.4	At1g36180	840522	ACC2 (ACETYL-COA CARBOXYLASE 2)	acetyl-CoA carboxylase 2 (ACC2)	O.I.	C.G.	H.G.
47.3	99.8	83.5	At4g25530	828658	FWA	Encodes a homeodomain-containing transcription factor that controls flowering. FWA is silenced in wild type plants and reverse of the imprinted silencing causes a late flowering phenotype. FWA gene contains two tandem repeats around the transcription start site that are necessary and sufficient for silencing via DNA methylation.	O.I.	C.G.	H.G.
47.2	99.8	86.0	At2g16440	816142	DNA replication licensing factor, putative	F:nucleoside-triphosphatase activity, DNA-dependent ATPase activity, DNA binding, nucleotide binding, ATP binding;P:DNA replication initiation, DNA replication;C:nucleus, chloroplast;MOFPBAV	O.I.	C.G.	H.G.
46.5	99.8	130.3	At2g04000	814926	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
46.1	99.8	90.0	At1g23410	838949	ubiquitin extension protein, putative / 40S ribosomal protein S27A (RPS27aA)	F:protein binding, structural constituent of ribosome;P:protein ubiquitination during ubiquitin-dependent protein catabolic process, protein modification process, translation;C:cytosolic small ribosomal subunit, plasma membrane;MPOFVAB	O.I.	C.G.	H.G.
44.7	99.8	251.1	At5g24660	832538	LSU2 (RESPONSE TO LOW SULFUR 2)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
44.0	99.8	87.7	At5g20600	832182	-	F:molecular_function unknown;P:rRNA processing;C:preribosome, small subunit precursor;MFOPB	O.I.	C.G.	H.G.
43.5	99.8	115.4	At1g71380	843479	ATCEL3 (ARABIDOPSIS THALIANA CELLULASE 3)	F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plasma membrane, plant-type cell wall;PBMOF	O.I.	C.G.	H.G.
43.4	99.8	62.8	At1g67820	843108	protein phosphatase 2C, putative / PP2C, putative	F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBV	O.I.	C.G.	H.G.
43.3	99.8	40.2	At5g18750	831993	DNAJ heat shock N-terminal domain-containing protein	F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMPFAV	O.I.	C.G.	H.G.
43.0	99.8	23.1	At5g08600	830761	U3 ribonucleoprotein (Utp) family protein	F:molecular_function unknown;P:rRNA processing;C:small-subunit processome;OMFBPVA	O.I.	C.G.	H.G.
42.7	99.8	126.6	At3g46940	823847	deoxyuridine 5'-triphosphate nucleotidohydrolase family	F:hydrolase activity, dUTP diphosphatase activity;P:2'-deoxyribonucleotide metabolic process, dUTP metabolic process;C:cellular_component unknown;BOVMFPA	O.I.	C.G.	H.G.
41.3	99.8	230.7	At2g44450	819052	BGLU15 (BETA GLUCOSIDASE 15)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plant-type cell wall;BOPMFA	O.I.	C.G.	H.G.
41.0	99.8	11.6	At4g16030	827287	structural constituent of ribosome	F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MOFP	O.I.	C.G.	H.G.
40.9	99.8	25.2	At1g50400	841462	porin family protein	F:voltage-gated anion channel activity;P:anion transport;C:mitochondrial outer membrane;MFOP	O.I.	C.G.	H.G.
40.8	99.8	64.4	At2g16780	816179	MSI2 (MULTICOPY SUPPRESSOR OF IRA1 2)	Encodes a WD-40 repeat protein similar to yeast MSI1.	O.I.	C.G.	H.G.
39.9	99.8	244.2	At2g44860	819095	60S ribosomal protein L24, putative	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, nucleolus;MOAFPB	O.I.	C.G.	H.G.
39.6	99.8	37.4	At1g68470	843176	exostosin family protein	F:catalytic activity;P:biological_process unknown;C:membrane;POM	O.I.	C.G.	H.G.
39.0	99.8	321.2	At3g16780	820931	60S ribosomal protein L19 (RPL19B)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, plasma membrane;MAOFP	O.I.	C.G.	H.G.
39.0	99.8	151.9	At5g12110	831084	elongation factor 1B alpha-subunit 1 (eEF1Balpha1)	F:translation elongation factor activity;P:translational elongation;C:eukaryotic translation elongation factor 1 complex;MOPF	O.I.	C.G.	H.G.
38.7	99.8	23.5	At2g03040	814833	transmembrane protein-related	F:unknown;P:transport;C:integral to membrane;MPOF	O.I.	C.G.	H.G.
38.1	99.8	186.8	At5g10390	830903	histone H3	F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPO	O.I.	C.G.	H.G.
38.0	99.8	14.3	At3g48130	3769680	-	ribosomal protein L13 homolog	O.I.	C.G.	H.G.
37.6	99.7	98.8	At3g16810	820934	APUM24 (Arabidopsis Pumilio 24)	F:RNA binding, binding;P:unknown;C:nucleolus;MFPOB	O.I.	C.G.	H.G.
36.9	99.7	12.8	At1g13330	837893	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFAPV	O.I.	C.G.	H.G.
36.7	99.7	17.7	At1g44510	3767344	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
36.5	99.7	117.9	At5g25780	832647	EIF3B-2 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B-2)	member of eIF3b - eukaryotic initiation factor 3b	O.I.	C.G.	H.G.
36.2	99.7	101.8	At4g12110	826819	SMO1-1 (STEROL-4ALPHA-METHYL OXIDASE 1-1)	Encodes a member of the SMO1 family of sterol 4alpha-methyl oxidases. More specifically functions as a 4,4-dimethyl-9beta,19-cyclopropylsterol-4alpha- methyl oxidase.	O.I.	C.G.	H.G.
35.8	99.7	9.6	At1g05370	837038	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FPMO	O.I.	C.G.	H.G.
35.7	99.7	139.6	At1g06220	837131	MEE5 (MATERNAL EFFECT EMBRYO ARREST 5)	Encodes a protein with similarity to splicing factor Snu114. Snu114 is thought to be involved in activation of the splicosome. Loss of GFA1 function results in reduced female fertility. Approximately 50% of ovules abort due to defects in the female gametophyte. In mutant gametophytes antipodal cells express egg cell markers suggesting a defect in specification of cell fate.GFA1 is also required to restrict the expression of LIS.	O.I.	C.G.	H.G.
35.7	99.7	37.1	At1g23100	838918	10 kDa chaperonin, putative	F:ATP binding;P:protein folding;C:mitochondrion;BOMPFV	O.I.	C.G.	H.G.
35.5	99.7	53.8	At4g02400	828039	-	F:molecular_function unknown;P:rRNA processing;C:small-subunit processome;MOFBPVA	O.I.	C.G.	H.G.
34.8	99.7	159.4	At2g01610	814690	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
34.7	99.7	29.8	At5g25800	832649	exonuclease family protein	F:exonuclease activity, nucleic acid binding;P:unknown;C:intracellular;MFOPBV	O.I.	C.G.	H.G.
34.6	99.7	183.1	At1g52930	841726	brix domain-containing protein	F:unknown;P:unknown;C:cellular_component unknown;MFOP	O.I.	C.G.	H.G.
34.4	99.7	65.6	At2g39795	818565	mitochondrial glycoprotein family protein / MAM33 family protein	F:unknown;P:unknown;C:mitochondrion, mitochondrial matrix;PFOMB	O.I.	C.G.	H.G.
34.2	99.7	22.3	At1g59540	842245	ZCF125	Encodes a kinesin-like protein.	O.I.	C.G.	H.G.
33.6	99.7	27.1	At5g11410	831012	protein kinase family protein	F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVA	O.I.	C.G.	H.G.
33.5	99.7	24.8	At1g36190	3766981	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
33.3	99.7	27.8	At3g20990	3768792	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
32.6	99.7	78.1	At1g12270	837781	stress-inducible protein, putative	F:binding;P:response to stress;C:unknown;OMBPFAV	O.I.	C.G.	H.G.
32.3	99.7	150.5	At2g42740	818874	RPL16A	encodes a cytosolic ribosomal protein L16, which is a constituent of 60S large ribosomal complex. Gene is expressed in root stele and anthers and expression is induced by auxin treatment.	O.I.	C.G.	H.G.
32.3	99.7	28.2	At2g38970	818482	zinc finger (C3HC4-type RING finger) family protein	F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;MBOPFAV	O.I.	C.G.	H.G.
32.2	99.7	88.2	At1g42440	840848	-	F:molecular_function unknown;P:ribosome biogenesis;C:nucleus;MOFBPV	O.I.	C.G.	H.G.
32.1	99.7	54.9	At3g16840	820937	ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding	F:helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity;P:biological_process unknown;C:cellular_component unknown;MOBFPAV	O.I.	C.G.	H.G.
31.6	99.7	128.1	At2g28510	817399	Dof-type zinc finger domain-containing protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleolus;POMFB	O.I.	C.G.	H.G.
31.6	99.7	16.0	At5g09840	830844	unknown protein	F:unknown;P:unknown;C:mitochondrion;PMFOB	O.I.	C.G.	H.G.
31.2	99.7	15.8	At2g01660	814695	PDLP6 (PLASMODESMATA-LOCATED PROTEIN 6)	Encodes a plasmodesmal protein that may be involved in the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain.	O.I.	C.G.	H.G.
31.1	99.7	20.1	At2g38720	818454	MAP65-5 (MICROTUBULE-ASSOCIATED PROTEIN 65-5)	F:microtubule binding;P:microtubule polymerization, anaphase;C:cortical microtubule, microtubule, preprophase band, spindle, phragmoplast;MOBFPAV	O.I.	C.G.	H.G.
31.0	99.7	93.8	At4g20020	827747	unknown protein	F:unknown;P:unknown;C:unknown;MBOPFVA	O.I.	C.G.	H.G.
30.9	99.7	241.8	At2g39700	818553	ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4)	putative expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.	O.I.	C.G.	H.G.
30.1	99.7	12.9	At1g45100	841077	polyadenylate-binding protein, putative / PABP, putative	F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MFPOB	O.I.	C.G.	H.G.
29.1	99.7	45.3	At1g60850	842377	ATRPAC42	F:DNA-directed RNA polymerase activity, protein dimerization activity, DNA binding;P:transcription;C:nucleolus;OMFAP	O.I.	C.G.	H.G.
29.0	99.7	204.4	At2g39210	818506	nodulin family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBPFMA	O.I.	C.G.	H.G.
29.0	99.7	119.3	At1g51730	841598	RWD domain-containing protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;MFOPB	O.I.	C.G.	H.G.
29.0	99.7	96.2	At1g42470	840851	patched family protein	F:hedgehog receptor activity;P:unknown;C:plasma membrane, membrane;MOBFPA	O.I.	C.G.	H.G.
28.7	99.7	34.6	At1g06450	837157	CCR4-NOT transcription complex protein, putative	F:ribonuclease activity, nucleic acid binding;P:RNA modification;C:nucleus;MPOF	O.I.	C.G.	H.G.
28.7	99.7	27.0	At5g12220	831096	las1-like family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP	O.I.	C.G.	H.G.
28.4	99.7	56.5	At2g20940	816628	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, plastid;MPFO	O.I.	C.G.	H.G.
28.3	99.7	73.6	At3g48100	823965	ARR5 (ARABIDOPSIS RESPONSE REGULATOR 5)	Encodes a transcription repressor that mediates a negative feedback loop in cytokinin signalling. ARR5 expression is upregulated by Class I KNOX genes. Arr5 protein is stabilized by cytokinin in a two-component phosphorelay.	O.I.	C.G.	H.G.
28.2	99.7	77.4	At3g27360	822357	histone H3	F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPO	O.I.	C.G.	H.G.
28.0	99.7	75.2	At5g06720	830561	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOMV	O.I.	C.G.	H.G.
27.9	99.7	34.6	At1g43840	3767325	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
27.8	99.7	22.2	At2g07140	815283	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
27.7	99.7	96.7	At1g15420	838113	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBV	O.I.	C.G.	H.G.
27.5	99.7	29.4	At5g20550	832177	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:flavonoid biosynthetic process;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
27.0	99.7	12.8	At2g40530	818648	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
26.6	99.7	116.1	At5g18620	831980	CHR17 (CHROMATIN REMODELING FACTOR17)	F:in 7 functions;P:ATP-dependent chromatin remodeling, chromatin remodeling;C:nucleus, chromatin remodeling complex;MOFBPVA	O.I.	C.G.	H.G.
26.6	99.7	19.1	At1g55610	842010	BRL1 (BRI 1 LIKE)	mutant has Altered vascular cell differentiation; LRR Receptor Kinase	O.I.	C.G.	H.G.
26.5	99.7	21.8	At4g23720	828472	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P	O.I.	C.G.	H.G.

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GSM ID	-
Assay name	E-ATMX-13-raw-cel-1556149935
GSE experiment	-

Microarray experiments to specifically-expressed genes

GSM ID - Assay name E-ATMX-13-raw-cel-1556149935 GSE experiment -

GSM ID -

Assay name E-ATMX-13-raw-cel-1556149935

GSE experiment -