Microarray experiments to specifically-expressed genes

GSM ID -
Assay name E-ATMX-13-raw-cel-1556149903
GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
165.5100.0176.5At2g20800816609NDB4 (NAD(P)H dehydrogenase B4)F:NADH dehydrogenase activity;P:unknown;C:extrinsic to mitochondrial inner membrane, mitochondrion, plastid;BOFPAMO.I.C.G.H.G.
165.4100.0106.1At1g59930842287unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
164.399.9169.9At1g3624084053060S ribosomal protein L30 (RPL30A)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit;MOAFPBO.I.C.G.H.G.
145.099.9149.2At2g17820816291ATHK1 (histidine kinase 1)Encodes a member of the histidine kinase family.O.I.C.G.H.G.
129.699.957.2At1g22090838814emb2204 (embryo defective 2204)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;PO.I.C.G.H.G.
104.399.9276.1At2g01610814690invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
97.299.920.3At2g47860819398phototropic-responsive NPH3 family proteinF:protein binding, signal transducer activity;P:response to light stimulus;C:plasma membrane;PO.I.C.G.H.G.
97.199.9103.3At5g4004083400160S acidic ribosomal protein P2 (RPP2E)F:structural constituent of ribosome;P:translational elongation;C:cytosolic ribosome, ribosome;MPFOABO.I.C.G.H.G.
94.299.936.6At2g03040814833transmembrane protein-relatedF:unknown;P:transport;C:integral to membrane;MPOFO.I.C.G.H.G.
90.599.965.4At2g15790816074SQN (SQUINT)SQN encodes the Arabidopsis homolog of cyclophilin 40 (CyP40). It is specifically required for the vegetative but not the reproductive maturation of the shoot.O.I.C.G.H.G.
85.899.9140.1At2g16570816156ATASE1 (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 1)Amidophosphoribosyltransferase (ATase: EC 2.4.2.14) is a key enzyme in the pathway of purine nucleotide biosynthesisO.I.C.G.H.G.
83.899.9160.1At1g71380843479ATCEL3 (ARABIDOPSIS THALIANA CELLULASE 3)F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plasma membrane, plant-type cell wall;PBMOFO.I.C.G.H.G.
81.299.970.0At1g51380841562eukaryotic translation initiation factor 4A, putative / eIF-4A, putativeF:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
67.899.942.1At5g43980834421PDLP1 (PLASMODESMATA-LOCATED PROTEIN 1)Encodes a plasmodesmal protein that affects the intercellular movement of molecules through the plasmodesmata. The cytoplasmic C-terminal portion of the protein is connected to the apoplastic N-terminal portion of the protein by a single transmembrane domain (TMD). It is transported to the plasmodesmata through the secretory pathway. PDLP1 has two DUF26 domains and a signal peptide, but the proper localization of the protein appears to depend on the TMD.O.I.C.G.H.G.
66.599.821.1At3g49770824139unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
64.999.8146.1At3g27400822361pectate lyase family proteinF:pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFOO.I.C.G.H.G.
64.899.837.7At5g11410831012protein kinase family proteinF:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVAO.I.C.G.H.G.
63.899.818.5At3g481303769680-ribosomal protein L13 homologO.I.C.G.H.G.
62.899.851.1At1g06450837157CCR4-NOT transcription complex protein, putativeF:ribonuclease activity, nucleic acid binding;P:RNA modification;C:nucleus;MPOFO.I.C.G.H.G.
62.599.875.8At1g60030842297xanthine/uracil permease family proteinF:transmembrane transporter activity;P:transport;C:plasma membrane, membrane;BOMPFAVO.I.C.G.H.G.
62.099.870.5At2g42710818871ribosomal protein L1 family proteinF:structural constituent of ribosome, RNA binding;P:translation, RNA processing;C:ribosome, intracellular, large ribosomal subunit;BOMFPAVO.I.C.G.H.G.
59.299.832.6At4g23720828472unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PO.I.C.G.H.G.
56.299.836.9At5g20540832176ATBRXL4 (BREVIS RADIX-LIKE 4)Belongs to five-member BRX gene family. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity.O.I.C.G.H.G.
54.899.858.6At5g61480836269leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
52.899.8138.8At2g04000814926transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
50.799.8101.2At2g45860819194unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
48.799.896.4At3g48100823965ARR5 (ARABIDOPSIS RESPONSE REGULATOR 5)Encodes a transcription repressor that mediates a negative feedback loop in cytokinin signalling. ARR5 expression is upregulated by Class I KNOX genes. Arr5 protein is stabilized by cytokinin in a two-component phosphorelay.O.I.C.G.H.G.
47.999.898.0At2g47260819339WRKY23member of WRKY Transcription Factor; Group IO.I.C.G.H.G.
47.799.820.6At3g23950821978F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
47.099.869.1At2g16780816179MSI2 (MULTICOPY SUPPRESSOR OF IRA1 2)Encodes a WD-40 repeat protein similar to yeast MSI1.O.I.C.G.H.G.
46.899.876.8At2g44830819092protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane, nucleus;MOPFBVAO.I.C.G.H.G.
46.299.890.0At1g23410838949ubiquitin extension protein, putative / 40S ribosomal protein S27A (RPS27aA)F:protein binding, structural constituent of ribosome;P:protein ubiquitination during ubiquitin-dependent protein catabolic process, protein modification process, translation;C:cytosolic small ribosomal subunit, plasma membrane;MPOFVABO.I.C.G.H.G.
46.199.882.4At4g25530828658FWAEncodes a homeodomain-containing transcription factor that controls flowering. FWA is silenced in wild type plants and reverse of the imprinted silencing causes a late flowering phenotype. FWA gene contains two tandem repeats around the transcription start site that are necessary and sufficient for silencing via DNA methylation.O.I.C.G.H.G.
44.199.8224.0At2g42570818857unknown proteinF:unknown;P:biological_process unknown;C:vacuole;PO.I.C.G.H.G.
43.999.823.9At2g38720818454MAP65-5 (MICROTUBULE-ASSOCIATED PROTEIN 65-5)F:microtubule binding;P:microtubule polymerization, anaphase;C:cortical microtubule, microtubule, preprophase band, spindle, phragmoplast;MOBFPAVO.I.C.G.H.G.
43.099.891.0At2g41480818746electron carrier/ heme binding / peroxidaseF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:unknown;POFBMO.I.C.G.H.G.
42.699.821.6At2g39820818569eukaryotic translation initiation factor 6, putative / eIF-6, putativeF:ribosome binding, translation initiation factor activity;P:translational initiation, mature ribosome assembly;C:cellular_component unknown;AOMFPO.I.C.G.H.G.
42.199.881.2At2g39220818507PLP6 (PATATIN-LIKE PROTEIN 6)F:nutrient reservoir activity;P:metabolic process, lipid metabolic process;C:unknown;PBOMFO.I.C.G.H.G.
41.599.843.3At1g67120843032ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / transcription factor bindingF:nucleoside-triphosphatase activity, ATPase activity, transcription factor binding, nucleotide binding, ATP binding;P:regulation of transcription, DNA-dependent, regulation of protein complex assembly;C:chloroplast envelope;OMBFPVAO.I.C.G.H.G.
41.599.840.2At5g50130835078short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.
40.499.837.3At2g43650818967EMB2777 (EMBRYO DEFECTIVE 2777)F:molecular_function unknown;P:unknown;C:unknown;MOBFPVAO.I.C.G.H.G.
39.699.834.9At3g16980820954NRPB9AOne of two highly similar, non-catalytic subunits common to nuclear DNA-directed RNA polymerases II, IV and V; homologous to budding yeast RPB9. Appears to be redundant with At4g16265O.I.C.G.H.G.
38.599.837.7At2g26710817212BAS1 (PHYB ACTIVATION TAGGED SUPPRESSOR 1)Encodes a member of the cytochrome p450 family that serves as a control point between multiple photoreceptor systems and brassinosteroid signal transduction. Involved in brassinolide metabolism. Mediates response to a variety of light signals including hypocotyl elongation and cotyledon expansion.O.I.C.G.H.G.
38.299.869.2At2g39795818565mitochondrial glycoprotein family protein / MAM33 family proteinF:unknown;P:unknown;C:mitochondrion, mitochondrial matrix;PFOMBO.I.C.G.H.G.
38.199.8163.3At2g42740818874RPL16Aencodes a cytosolic ribosomal protein L16, which is a constituent of 60S large ribosomal complex. Gene is expressed in root stele and anthers and expression is induced by auxin treatment.O.I.C.G.H.G.
37.899.8109.2At5g25190832590ethylene-responsive element-binding protein, putativeencodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.O.I.C.G.H.G.
37.799.7100.4At2g17280816234phosphoglycerate/bisphosphoglycerate mutase family proteinF:catalytic activity;P:metabolic process;C:cellular_component unknown;FOPBO.I.C.G.H.G.
37.599.737.8At1g528503767446transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
36.999.7217.9At2g44450819052BGLU15 (BETA GLUCOSIDASE 15)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plant-type cell wall;BOPMFAO.I.C.G.H.G.
36.899.7265.3At1g41830840792SKS6 (SKU5-SIMILAR 6)F:pectinesterase activity;P:unknown;C:apoplast, cell wall, membrane, plant-type cell wall;FBPMOAO.I.C.G.H.G.
36.899.736.3At5g10520830917RBK1 (Rop Binding protein Kinases 1)F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:defense response, incompatible interaction;C:cytosol, endomembrane system;MPOBFVAO.I.C.G.H.G.
36.699.791.9At5g19530832073ACL5 (ACAULIS 5)Encodes a spermine synthase. Required for internode elongation and vascular development, specifically in the mechanism that defines the boundaries between veins and nonvein regions. This mechanism may be mediated by polar auxin transport. Though ACL5 has been shown to function as a spermine synthase in E. coli, an ACL5 knockout has no effect on the endogenous levels of free and conjugated polyamines in Arabidopsis, suggesting that ACL5 may have a very specific or altogether different in vivo function.O.I.C.G.H.G.
36.399.7309.7At3g1678082093160S ribosomal protein L19 (RPL19B)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, plasma membrane;MAOFPO.I.C.G.H.G.
36.399.787.8At3g27360822357histone H3F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPOO.I.C.G.H.G.
36.399.751.8At3g16870820942zinc finger (GATA type) family proteinF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;FPMOO.I.C.G.H.G.
36.099.736.6At5g18750831993DNAJ heat shock N-terminal domain-containing proteinF:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMPFAVO.I.C.G.H.G.
35.899.769.1At1g68360843165zinc finger protein-relatedF:transcription factor activity;P:regulation of transcription;C:intracellular;PMOO.I.C.G.H.G.
35.599.785.2At2g39870818574unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO.I.C.G.H.G.
34.799.7134.8At2g13820815865protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:anchored to plasma membrane, plasma membrane;PFO.I.C.G.H.G.
34.699.746.3At3g61850825358DAG1 (dof affecting germination 1)Zinc finger transcription factor of the Dof family involved in the control of seed germination.O.I.C.G.H.G.
34.399.777.5At5g20600832182-F:molecular_function unknown;P:rRNA processing;C:preribosome, small subunit precursor;MFOPBO.I.C.G.H.G.
34.299.7182.0At1g52930841726brix domain-containing proteinF:unknown;P:unknown;C:cellular_component unknown;MFOPO.I.C.G.H.G.
34.199.729.4At5g12220831096las1-like family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPO.I.C.G.H.G.
33.999.738.1At5g12980831138rcd1-like cell differentiation protein, putativeF:molecular_function unknown;P:multicellular organismal development;C:unknown;MFPOO.I.C.G.H.G.
33.899.776.2At2g41010818701ATCAMBP25 (ARABIDOPSIS THALIANA CALMODULIN (CAM)-BINDING PROTEIN OF 25 KDA)Encodes a novel calmodulin binding protein whose gene expression is induced by dehydration and ionic (salt) and non-ionic (mannitol) osmotic stress. Lines over-expressing this gene are more sensitive and anti-sense lines are more tolerant to osmotic stress, suggesting this gene may be a negative regulator of response to osmotic stress.O.I.C.G.H.G.
33.699.725.7At2g43140818916DNA binding / transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOBFO.I.C.G.H.G.
32.999.728.4At2g38970818482zinc finger (C3HC4-type RING finger) family proteinF:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;MBOPFAVO.I.C.G.H.G.
32.899.721.3At1g55610842010BRL1 (BRI 1 LIKE)mutant has Altered vascular cell differentiation; LRR Receptor KinaseO.I.C.G.H.G.
32.799.7220.9At2g4486081909560S ribosomal protein L24, putativeF:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, nucleolus;MOAFPBO.I.C.G.H.G.
32.699.7374.3At1g51060841528HTA10Encodes HTA10, a histone H2A protein.O.I.C.G.H.G.
32.399.7129.6At2g28510817399Dof-type zinc finger domain-containing proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleolus;POMFBO.I.C.G.H.G.
32.299.735.3At1g2310083891810 kDa chaperonin, putativeF:ATP binding;P:protein folding;C:mitochondrion;BOMPFVO.I.C.G.H.G.
32.099.730.8At5g16720831534unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MOFBPAVO.I.C.G.H.G.
31.999.780.3At5g06720830561peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOMVO.I.C.G.H.G.
31.999.713.9At2g40530818648unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
31.699.7100.4At1g42470840851patched family proteinF:hedgehog receptor activity;P:unknown;C:plasma membrane, membrane;MOBFPAO.I.C.G.H.G.
31.399.748.6At1g33450840238transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
31.299.727.7At2g35480818113unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.C.G.H.G.
31.199.745.4At4g18610827595LSH9 (LIGHT SENSITIVE HYPOCOTYLS 9)F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMO.I.C.G.H.G.
30.999.7135.3At5g12110831084elongation factor 1B alpha-subunit 1 (eEF1Balpha1)F:translation elongation factor activity;P:translational elongation;C:eukaryotic translation elongation factor 1 complex;MOPFO.I.C.G.H.G.
30.899.743.6At2g28660817415copper-binding family proteinF:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:chloroplast;OPMBFO.I.C.G.H.G.
30.799.767.7At2g19670816486PRMT1A (PROTEIN ARGININE METHYLTRANSFERASE 1A)F:protein-arginine N-methyltransferase activity;P:unknown;C:unknown;MBOPFAO.I.C.G.H.G.
30.499.735.2At5g12330831108LRP1 (LATERAL ROOT PRIMORDIUM 1)A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Expressed in lateral root primordia and induced by auxin. SWP1 is involved in the repression of LRP1 via histone deacetylation.O.I.C.G.H.G.
30.399.718.9At2g40640818659-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
29.999.767.7At5g24840832553tRNA (guanine-N7-)-methyltransferaseF:tRNA (guanine-N7-)-methyltransferase activity;P:acetate biosynthetic process from carbon monoxide, methanol oxidation, tRNA modification;C:cellular_component unknown;BOMFPO.I.C.G.H.G.
29.799.7158.0At2g27080817250harpin-induced protein-related / HIN1-related / harpin-responsive protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
29.499.732.3At1g68470843176exostosin family proteinF:catalytic activity;P:biological_process unknown;C:membrane;POMO.I.C.G.H.G.
29.399.78.8At2g43270818929F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
28.799.770.5At1g33940840291-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.C.G.H.G.
28.599.757.8At2g46920819306POL (poltergeist)Pol mutations are recessive, partial suppressors of meristem defects in strong clv1 and clv3 mutants, and nearly complete suppressors of weak clv1 mutants. Single mutants appear normal. Acts downstream of the CLV signaling pathway in meristem development and is required together with PLL1 for stem-cell maintenance through the regulation of WUS.O.I.C.G.H.G.
28.599.740.3At3g45960823739ATEXLA3 (arabidopsis thaliana expansin-like a3)member of EXPANSIN-LIKE. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.C.G.H.G.
28.299.760.7At2g39705818554RTFL8 (ROTUNDIFOLIA LIKE 8)F:molecular_function unknown;P:shoot development;C:chloroplast;PO.I.C.G.H.G.
28.199.7107.0At2g45440819152DHDPS2 (DIHYDRODIPICOLINATE SYNTHASE)Encodes a protein that likely has dihydropicolinate synthase activity based on its mutant phenotype of decreased lysine levels and increased aspartate levels. The mutant also has increased levels of threonine. The enzyme is predicted to localize to the chloroplast.O.I.C.G.H.G.
28.099.7155.7At2g41110818710CAM2 (CALMODULIN 2)Encodes a touch-inducible calmodulin that has higher affinity to kinesin-like calmodulin binding motor protein than CAM4 or CAM6.O.I.C.G.H.G.
27.999.719.0At5g17270831592tetratricopeptide repeat (TPR)-containing proteinF:binding;P:biological_process unknown;C:cellular_component unknown;OBMAFPO.I.C.G.H.G.
27.699.788.2At2g46930819307pectinacetylesterase, putativeF:carboxylesterase activity;P:unknown;C:endomembrane system;PMOBO.I.C.G.H.G.
27.599.739.1At2g25140817052CLPB4 (CASEIN LYTIC PROTEINASE B4)Encodes ClpB4, which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family. Targeted to the mitochondrion, also referred to as ClpB-m. Transcripts of ClpB4 accumulate dramatically at high temperatures, suggesting that it may be involved in response to heat stress.O.I.C.G.H.G.
27.599.721.2At2g25320817070-F:unknown;P:unknown;C:chloroplast;MOBFPAVO.I.C.G.H.G.
27.199.722.3At1g361903766981transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
26.999.721.8At2g07140815283-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.



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