Microarray experiments to specifically-expressed genes

GSM ID -
Assay name E-ATMX-13-raw-cel-1556149887
GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
335.4100.0151.1At1g59930842287unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
172.7100.0162.9At2g17820816291ATHK1 (histidine kinase 1)Encodes a member of the histidine kinase family.O.I.C.G.H.G.
161.699.998.7At1g51380841562eukaryotic translation initiation factor 4A, putative / eIF-4A, putativeF:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
141.299.9124.6At5g4004083400160S acidic ribosomal protein P2 (RPP2E)F:structural constituent of ribosome;P:translational elongation;C:cytosolic ribosome, ribosome;MPFOABO.I.C.G.H.G.
137.599.958.9At1g22090838814emb2204 (embryo defective 2204)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;PO.I.C.G.H.G.
125.799.9153.8At2g20800816609NDB4 (NAD(P)H dehydrogenase B4)F:NADH dehydrogenase activity;P:unknown;C:extrinsic to mitochondrial inner membrane, mitochondrion, plastid;BOFPAMO.I.C.G.H.G.
113.499.9101.6At1g67820843108protein phosphatase 2C, putative / PP2C, putativeF:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBVO.I.C.G.H.G.
112.499.9140.5At1g3624084053060S ribosomal protein L30 (RPL30A)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit;MOAFPBO.I.C.G.H.G.
106.099.945.6At2g43140818916DNA binding / transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOBFO.I.C.G.H.G.
105.299.9300.7At5g06870830578PGIP2 (POLYGALACTURONASE INHIBITING PROTEIN 2)Encodes a polygalacturonase inhibiting protein involved in plant defense response. PGIPs inhibit the activity of pectin degrading enzymes such as those produced by fungal pathogens. PGIP2 is induced by fungal infection and methyl jasmonate.O.I.C.G.H.G.
97.599.937.3At2g03040814833transmembrane protein-relatedF:unknown;P:transport;C:integral to membrane;MPOFO.I.C.G.H.G.
91.799.964.3At1g67120843032ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / transcription factor bindingF:nucleoside-triphosphatase activity, ATPase activity, transcription factor binding, nucleotide binding, ATP binding;P:regulation of transcription, DNA-dependent, regulation of protein complex assembly;C:chloroplast envelope;OMBFPVAO.I.C.G.H.G.
86.999.9141.0At2g16570816156ATASE1 (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 1)Amidophosphoribosyltransferase (ATase: EC 2.4.2.14) is a key enzyme in the pathway of purine nucleotide biosynthesisO.I.C.G.H.G.
83.699.962.8At2g15790816074SQN (SQUINT)SQN encodes the Arabidopsis homolog of cyclophilin 40 (CyP40). It is specifically required for the vegetative but not the reproductive maturation of the shoot.O.I.C.G.H.G.
74.699.928.6At2g39820818569eukaryotic translation initiation factor 6, putative / eIF-6, putativeF:ribosome binding, translation initiation factor activity;P:translational initiation, mature ribosome assembly;C:cellular_component unknown;AOMFPO.I.C.G.H.G.
74.299.9192.8At5g13220831162JAZ10 (JASMONATE-ZIM-DOMAIN PROTEIN 10)Plants overexpressing At5g13220.3, but not At5g13220.1 showed enhanced insensitivity to MeJa.O.I.C.G.H.G.
70.999.925.2At3g23950821978F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
70.099.993.9At2g44830819092protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane, nucleus;MOPFBVAO.I.C.G.H.G.
69.999.951.6At1g528503767446transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
64.399.8182.9At2g28510817399Dof-type zinc finger domain-containing proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleolus;POMFBO.I.C.G.H.G.
63.599.837.3At5g11410831012protein kinase family proteinF:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVAO.I.C.G.H.G.
61.899.898.2At2g15760816070calmodulin-binding proteinF:calmodulin binding;P:biological_process unknown;C:plasma membrane;PO.I.C.G.H.G.
61.299.822.9At1g445103767344transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
59.399.838.2At2g38970818482zinc finger (C3HC4-type RING finger) family proteinF:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;MBOPFAVO.I.C.G.H.G.
59.199.845.1At2g43650818967EMB2777 (EMBRYO DEFECTIVE 2777)F:molecular_function unknown;P:unknown;C:unknown;MOBFPVAO.I.C.G.H.G.
56.999.893.3At5g24840832553tRNA (guanine-N7-)-methyltransferaseF:tRNA (guanine-N7-)-methyltransferase activity;P:acetate biosynthetic process from carbon monoxide, methanol oxidation, tRNA modification;C:cellular_component unknown;BOMFPO.I.C.G.H.G.
56.999.817.5At3g481303769680-ribosomal protein L13 homologO.I.C.G.H.G.
56.799.899.1At1g33940840291-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.C.G.H.G.
56.799.881.4At2g46920819306POL (poltergeist)Pol mutations are recessive, partial suppressors of meristem defects in strong clv1 and clv3 mutants, and nearly complete suppressors of weak clv1 mutants. Single mutants appear normal. Acts downstream of the CLV signaling pathway in meristem development and is required together with PLL1 for stem-cell maintenance through the regulation of WUS.O.I.C.G.H.G.
54.499.8140.8At2g04000814926transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
53.999.8104.2At2g45860819194unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
53.499.826.4At2g38720818454MAP65-5 (MICROTUBULE-ASSOCIATED PROTEIN 65-5)F:microtubule binding;P:microtubule polymerization, anaphase;C:cortical microtubule, microtubule, preprophase band, spindle, phragmoplast;MOBFPAVO.I.C.G.H.G.
50.799.825.1At5g10850830952transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
49.399.878.5At2g39795818565mitochondrial glycoprotein family protein / MAM33 family proteinF:unknown;P:unknown;C:mitochondrion, mitochondrial matrix;PFOMBO.I.C.G.H.G.
48.899.8135.3At3g46940823847deoxyuridine 5'-triphosphate nucleotidohydrolase familyF:hydrolase activity, dUTP diphosphatase activity;P:2'-deoxyribonucleotide metabolic process, dUTP metabolic process;C:cellular_component unknown;BOVMFPAO.I.C.G.H.G.
48.899.823.7At2g31180817674MYB14 (MYB DOMAIN PROTEIN 14)Member of the R2R3 factor gene family.O.I.C.G.H.G.
47.399.8113.3At2g21640816702-Encodes a protein of unknown function that is a marker for oxidative stress response.O.I.C.G.H.G.
46.099.889.9At1g23410838949ubiquitin extension protein, putative / 40S ribosomal protein S27A (RPS27aA)F:protein binding, structural constituent of ribosome;P:protein ubiquitination during ubiquitin-dependent protein catabolic process, protein modification process, translation;C:cytosolic small ribosomal subunit, plasma membrane;MPOFVABO.I.C.G.H.G.
45.399.867.8At2g16780816179MSI2 (MULTICOPY SUPPRESSOR OF IRA1 2)Encodes a WD-40 repeat protein similar to yeast MSI1.O.I.C.G.H.G.
45.299.857.8At3g16870820942zinc finger (GATA type) family proteinF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;FPMOO.I.C.G.H.G.
44.499.894.5At2g29490817498ATGSTU1 (GLUTATHIONE S-TRANSFERASE TAU 1)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
44.199.859.5At2g42710818871ribosomal protein L1 family proteinF:structural constituent of ribosome, RNA binding;P:translation, RNA processing;C:ribosome, intracellular, large ribosomal subunit;BOMFPAVO.I.C.G.H.G.
43.499.8117.0At5g25190832590ethylene-responsive element-binding protein, putativeencodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.O.I.C.G.H.G.
43.299.8249.3At2g39210818506nodulin family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBPFMAO.I.C.G.H.G.
43.199.886.9At5g20600832182-F:molecular_function unknown;P:rRNA processing;C:preribosome, small subunit precursor;MFOPBO.I.C.G.H.G.
42.099.878.6At4g25530828658FWAEncodes a homeodomain-containing transcription factor that controls flowering. FWA is silenced in wild type plants and reverse of the imprinted silencing causes a late flowering phenotype. FWA gene contains two tandem repeats around the transcription start site that are necessary and sufficient for silencing via DNA methylation.O.I.C.G.H.G.
41.699.8166.5At1g51760841602IAR3 (IAA-ALANINE RESISTANT 3)encodes a member of the six Arabidopsis IAA-amino acid conjugate hydrolase subfamily and conjugates and conjugates IAA-Ala in vitro. Gene is expressed most strongly in roots, stems, and flowers.O.I.C.G.H.G.
41.399.820.7At5g18920832010unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFO.I.C.G.H.G.
41.299.874.1At1g68360843165zinc finger protein-relatedF:transcription factor activity;P:regulation of transcription;C:intracellular;PMOO.I.C.G.H.G.
40.599.8246.0At2g4486081909560S ribosomal protein L24, putativeF:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, nucleolus;MOAFPBO.I.C.G.H.G.
40.299.846.4At2g44070819013GTP binding / translation initiation factorF:GTP binding, translation initiation factor activity;P:translational initiation, cellular metabolic process;C:eukaryotic translation initiation factor 2B complex;OBMFAPO.I.C.G.H.G.
39.799.8117.9At2g15690816062pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBVAO.I.C.G.H.G.
39.499.876.7At2g19670816486PRMT1A (PROTEIN ARGININE METHYLTRANSFERASE 1A)F:protein-arginine N-methyltransferase activity;P:unknown;C:unknown;MBOPFAO.I.C.G.H.G.
39.499.841.3At1g63650842669EGL3 (ENHANCER OF GLABRA 3)Mutant has reduced trichomes, anthocyanin, and seed coat mucilage and abnormally patterned stomates. Encodes a bHLH Transcription Factor 1. The protein is functionally redundant with GL3 and TT8 and interacts with TTG1, the myb proteins GL1, PAP1 and 2, CPC and TRY, and it will form heterodimers with GL3. Expression in N (non-hair cell forming) cell layers is negatively regulated by WER. Expression in H cells (hair cell forming) is promoted by CPC/TRY.O.I.C.G.H.G.
39.099.838.1At5g18750831993DNAJ heat shock N-terminal domain-containing proteinF:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMPFAVO.I.C.G.H.G.
39.099.831.5At5g12220831096las1-like family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPO.I.C.G.H.G.
38.899.888.1At2g47260819339WRKY23member of WRKY Transcription Factor; Group IO.I.C.G.H.G.
38.399.844.6At2g38760818458ANNAT3 (ANNEXIN ARABIDOPSIS 3)Annexins are calcium binding proteins that are localized in the cytoplasm. When cytosolic Ca2+ increases, they relocate to the plasma membrane.O.I.C.G.H.G.
38.399.824.4At1g50400841462porin family proteinF:voltage-gated anion channel activity;P:anion transport;C:mitochondrial outer membrane;MFOPO.I.C.G.H.G.
37.699.7149.1At5g12110831084elongation factor 1B alpha-subunit 1 (eEF1Balpha1)F:translation elongation factor activity;P:translational elongation;C:eukaryotic translation elongation factor 1 complex;MOPFO.I.C.G.H.G.
37.699.711.1At4g16030827287structural constituent of ribosomeF:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MOFPO.I.C.G.H.G.
36.899.7160.6At2g42740818874RPL16Aencodes a cytosolic ribosomal protein L16, which is a constituent of 60S large ribosomal complex. Gene is expressed in root stele and anthers and expression is induced by auxin treatment.O.I.C.G.H.G.
36.699.797.5At3g16810820934APUM24 (Arabidopsis Pumilio 24)F:RNA binding, binding;P:unknown;C:nucleolus;MFPOBO.I.C.G.H.G.
36.699.752.6At1g33450840238transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
36.499.717.2At5g09840830844unknown proteinF:unknown;P:unknown;C:mitochondrion;PMFOBO.I.C.G.H.G.
36.399.733.4At3g16980820954NRPB9AOne of two highly similar, non-catalytic subunits common to nuclear DNA-directed RNA polymerases II, IV and V; homologous to budding yeast RPB9. Appears to be redundant with At4g16265O.I.C.G.H.G.
35.899.793.0At2g17630816270phosphoserine aminotransferase, putativeF:pyridoxal phosphate binding, transaminase activity, catalytic activity, O-phospho-L-serine:2-oxoglutarate aminotransferase activity;P:response to cadmium ion;C:chloroplast;BOMFPAO.I.C.G.H.G.
35.699.7185.7At1g52930841726brix domain-containing proteinF:unknown;P:unknown;C:cellular_component unknown;MFOPO.I.C.G.H.G.
35.299.774.2At2g16440816142DNA replication licensing factor, putativeF:nucleoside-triphosphatase activity, DNA-dependent ATPase activity, DNA binding, nucleotide binding, ATP binding;P:DNA replication initiation, DNA replication;C:nucleus, chloroplast;MOFPBAVO.I.C.G.H.G.
34.899.762.7At2g20940816628unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion, plastid;MPFOO.I.C.G.H.G.
34.799.721.9At1g55610842010BRL1 (BRI 1 LIKE)mutant has Altered vascular cell differentiation; LRR Receptor KinaseO.I.C.G.H.G.
34.499.782.0At1g01940839309peptidyl-prolyl cis-trans isomerase cyclophilin-type family proteinF:peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:cellular_component unknown;OBMFPAO.I.C.G.H.G.
34.499.753.0At4g02400828039-F:molecular_function unknown;P:rRNA processing;C:small-subunit processome;MOFBPVAO.I.C.G.H.G.
34.499.728.2At3g209903768792transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
33.999.737.2At5g12330831108LRP1 (LATERAL ROOT PRIMORDIUM 1)A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Expressed in lateral root primordia and induced by auxin. SWP1 is involved in the repression of LRP1 via histone deacetylation.O.I.C.G.H.G.
33.899.756.3At3g16840820937ATP binding / ATP-dependent helicase/ helicase/ nucleic acid bindingF:helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity;P:biological_process unknown;C:cellular_component unknown;MOBFPAVO.I.C.G.H.G.
33.899.736.1At3g15357820774unknown proteinF:unknown;P:biological_process unknown;C:chloroplast;OMBFPVAO.I.C.G.H.G.
33.299.729.3At1g69380843270unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;FBOPMO.I.C.G.H.G.
32.999.751.7At5g57100835814transporter-relatedF:unknown;P:unknown;C:membrane;PMFOBO.I.C.G.H.G.
32.999.727.1At3g23240821902ERF1 (ETHYLENE RESPONSE FACTOR 1)encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ERF1). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. EREBP like protein that binds GCC box of ethylene regulated promoters such as basic chitinases. Constitutive expression of ERF1 phenocopies ethylene over production. Involved in ethylene signaling cascade,downstream of EIN2 and EIN3.O.I.C.G.H.G.
32.399.7132.7At1g06220837131MEE5 (MATERNAL EFFECT EMBRYO ARREST 5)Encodes a protein with similarity to splicing factor Snu114. Snu114 is thought to be involved in activation of the splicosome. Loss of GFA1 function results in reduced female fertility. Approximately 50% of ovules abort due to defects in the female gametophyte. In mutant gametophytes antipodal cells express egg cell markers suggesting a defect in specification of cell fate.GFA1 is also required to restrict the expression of LIS.O.I.C.G.H.G.
32.299.7291.7At3g1678082093160S ribosomal protein L19 (RPL19B)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, plasma membrane;MAOFPO.I.C.G.H.G.
32.299.719.9At5g08600830761U3 ribonucleoprotein (Utp) family proteinF:molecular_function unknown;P:rRNA processing;C:small-subunit processome;OMFBPVAO.I.C.G.H.G.
31.799.745.0At3g46770823830transcriptional factor B3 family proteinF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PO.I.C.G.H.G.
31.599.734.9At1g2310083891810 kDa chaperonin, putativeF:ATP binding;P:protein folding;C:mitochondrion;BOMPFVO.I.C.G.H.G.
31.499.711.9At2g16960816199importin beta-2 subunit family proteinF:protein transporter activity, binding;P:biological_process unknown;C:cellular_component unknown;MFOPO.I.C.G.H.G.
31.299.717.0At2g142303767832transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
31.199.746.9At1g60850842377ATRPAC42F:DNA-directed RNA polymerase activity, protein dimerization activity, DNA binding;P:transcription;C:nucleolus;OMFAPO.I.C.G.H.G.
30.699.713.2At3g58210824990meprin and TRAF homology domain-containing protein / MATH domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOBAO.I.C.G.H.G.
30.599.754.4At5g16750831538TOZ (TORMOZEMBRYO DEFECTIVE)Encodes a nucleolar localized WD-40 repeat protein that is preferentially expressed in dividing cells and is required for regulated division planes and embryo development.O.I.C.G.H.G.
30.599.734.5At1g36180840522ACC2 (ACETYL-COA CARBOXYLASE 2)acetyl-CoA carboxylase 2 (ACC2)O.I.C.G.H.G.
30.399.760.1At2g40550818650ETG1 (E2F TARGET GENE 1)Encodes a nuclear localized target of E2Fa-DPa, transcription factors controlling cell cycle progression.O.I.C.G.H.G.
30.099.729.3At5g57130835819protein bindingF:protein binding;P:protein metabolic process;C:cellular_component unknown;PBOAMO.I.C.G.H.G.
29.899.748.4At1g18320838412mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family proteinF:protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity;P:protein transport;C:mitochondrial inner membrane, mitochondrial inner membrane presequence translocase complex;MFPOO.I.C.G.H.G.
29.899.746.7At5g5924083604240S ribosomal protein S8 (RPS8B)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, membrane;MAOFPO.I.C.G.H.G.
29.899.712.8At1g45100841077polyadenylate-binding protein, putative / PABP, putativeF:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MFPOBO.I.C.G.H.G.
29.799.723.4At1g361903766981transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
29.599.727.5At5g25800832649exonuclease family proteinF:exonuclease activity, nucleic acid binding;P:unknown;C:intracellular;MFOPBVO.I.C.G.H.G.
28.999.770.9At5g38890833880exoribonuclease-relatedF:RNA binding;P:biological_process unknown;C:cellular_component unknown;FMAOPO.I.C.G.H.G.
28.299.719.0At3g61340825306F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.



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