Microarray experiments to specifically-expressed genes

GSM ID -
Assay name E-ATMX-13-raw-cel-1556149727
GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
230.6100.0125.3At1g59930842287unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
170.9100.0137.1At5g4004083400160S acidic ribosomal protein P2 (RPP2E)F:structural constituent of ribosome;P:translational elongation;C:cytosolic ribosome, ribosome;MPFOABO.I.C.G.H.G.
156.599.9165.8At1g3624084053060S ribosomal protein L30 (RPL30A)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit;MOAFPBO.I.C.G.H.G.
150.099.961.5At1g22090838814emb2204 (embryo defective 2204)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;PO.I.C.G.H.G.
149.499.9167.7At2g20800816609NDB4 (NAD(P)H dehydrogenase B4)F:NADH dehydrogenase activity;P:unknown;C:extrinsic to mitochondrial inner membrane, mitochondrion, plastid;BOFPAMO.I.C.G.H.G.
118.599.974.8At2g15790816074SQN (SQUINT)SQN encodes the Arabidopsis homolog of cyclophilin 40 (CyP40). It is specifically required for the vegetative but not the reproductive maturation of the shoot.O.I.C.G.H.G.
116.299.983.7At1g51380841562eukaryotic translation initiation factor 4A, putative / eIF-4A, putativeF:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
105.899.9156.3At5g19530832073ACL5 (ACAULIS 5)Encodes a spermine synthase. Required for internode elongation and vascular development, specifically in the mechanism that defines the boundaries between veins and nonvein regions. This mechanism may be mediated by polar auxin transport. Though ACL5 has been shown to function as a spermine synthase in E. coli, an ACL5 knockout has no effect on the endogenous levels of free and conjugated polyamines in Arabidopsis, suggesting that ACL5 may have a very specific or altogether different in vivo function.O.I.C.G.H.G.
103.199.938.3At2g03040814833transmembrane protein-relatedF:unknown;P:transport;C:integral to membrane;MPOFO.I.C.G.H.G.
102.599.9183.5At3g27400822361pectate lyase family proteinF:pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFOO.I.C.G.H.G.
102.099.920.8At2g47860819398phototropic-responsive NPH3 family proteinF:protein binding, signal transducer activity;P:response to light stimulus;C:plasma membrane;PO.I.C.G.H.G.
97.199.9266.4At2g01610814690invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
96.799.966.1At1g67120843032ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / transcription factor bindingF:nucleoside-triphosphatase activity, ATPase activity, transcription factor binding, nucleotide binding, ATP binding;P:regulation of transcription, DNA-dependent, regulation of protein complex assembly;C:chloroplast envelope;OMBFPVAO.I.C.G.H.G.
96.399.9171.6At1g71380843479ATCEL3 (ARABIDOPSIS THALIANA CELLULASE 3)F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plasma membrane, plant-type cell wall;PBMOFO.I.C.G.H.G.
94.999.9129.1At1g23410838949ubiquitin extension protein, putative / 40S ribosomal protein S27A (RPS27aA)F:protein binding, structural constituent of ribosome;P:protein ubiquitination during ubiquitin-dependent protein catabolic process, protein modification process, translation;C:cytosolic small ribosomal subunit, plasma membrane;MPOFVABO.I.C.G.H.G.
93.399.9136.6At2g47260819339WRKY23member of WRKY Transcription Factor; Group IO.I.C.G.H.G.
91.699.948.9At5g43980834421PDLP1 (PLASMODESMATA-LOCATED PROTEIN 1)Encodes a plasmodesmal protein that affects the intercellular movement of molecules through the plasmodesmata. The cytoplasmic C-terminal portion of the protein is connected to the apoplastic N-terminal portion of the protein by a single transmembrane domain (TMD). It is transported to the plasmodesmata through the secretory pathway. PDLP1 has two DUF26 domains and a signal peptide, but the proper localization of the protein appears to depend on the TMD.O.I.C.G.H.G.
80.199.9336.2At5g24660832538LSU2 (RESPONSE TO LOW SULFUR 2)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
75.099.9107.4At2g17820816291ATHK1 (histidine kinase 1)Encodes a member of the histidine kinase family.O.I.C.G.H.G.
65.599.8244.9At5g10390830903histone H3F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPOO.I.C.G.H.G.
64.899.8153.7At2g04000814926transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
63.799.8120.7At2g16570816156ATASE1 (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 1)Amidophosphoribosyltransferase (ATase: EC 2.4.2.14) is a key enzyme in the pathway of purine nucleotide biosynthesisO.I.C.G.H.G.
63.299.871.2At2g42710818871ribosomal protein L1 family proteinF:structural constituent of ribosome, RNA binding;P:translation, RNA processing;C:ribosome, intracellular, large ribosomal subunit;BOMFPAVO.I.C.G.H.G.
62.899.8140.8At5g25190832590ethylene-responsive element-binding protein, putativeencodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.O.I.C.G.H.G.
62.899.842.5At3g62100825383IAA30 (INDOLE-3-ACETIC ACID INDUCIBLE 30)Encodes a member of the Aux/IAA family of proteins implicated in auxin signaling. IAA30 lacks the conserved degron (domain II) found in many family members. IAA30 transcripts are induced by auxin treatment and accumulate preferentially in the quiescent center cells of the root meristem. Overexpression of IAA30 leads to defects in gravitropism, root development, root meristem maintenance, and cotyledon vascular development.O.I.C.G.H.G.
62.299.850.9At1g06450837157CCR4-NOT transcription complex protein, putativeF:ribonuclease activity, nucleic acid binding;P:RNA modification;C:nucleus;MPOFO.I.C.G.H.G.
61.399.823.4At3g23950821978F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
59.999.836.2At5g11410831012protein kinase family proteinF:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVAO.I.C.G.H.G.
59.499.877.7At2g16780816179MSI2 (MULTICOPY SUPPRESSOR OF IRA1 2)Encodes a WD-40 repeat protein similar to yeast MSI1.O.I.C.G.H.G.
58.599.847.2At1g528503767446transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
58.399.892.6At4g25530828658FWAEncodes a homeodomain-containing transcription factor that controls flowering. FWA is silenced in wild type plants and reverse of the imprinted silencing causes a late flowering phenotype. FWA gene contains two tandem repeats around the transcription start site that are necessary and sufficient for silencing via DNA methylation.O.I.C.G.H.G.
55.999.847.8At5g12330831108LRP1 (LATERAL ROOT PRIMORDIUM 1)A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Expressed in lateral root primordia and induced by auxin. SWP1 is involved in the repression of LRP1 via histone deacetylation.O.I.C.G.H.G.
55.799.864.0At5g5924083604240S ribosomal protein S8 (RPS8B)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, membrane;MAOFPO.I.C.G.H.G.
55.499.871.4At1g60030842297xanthine/uracil permease family proteinF:transmembrane transporter activity;P:transport;C:plasma membrane, membrane;BOMPFAVO.I.C.G.H.G.
54.799.826.7At2g38720818454MAP65-5 (MICROTUBULE-ASSOCIATED PROTEIN 65-5)F:microtubule binding;P:microtubule polymerization, anaphase;C:cortical microtubule, microtubule, preprophase band, spindle, phragmoplast;MOBFPAVO.I.C.G.H.G.
54.599.836.3At5g20540832176ATBRXL4 (BREVIS RADIX-LIKE 4)Belongs to five-member BRX gene family. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity.O.I.C.G.H.G.
53.699.890.6At5g24840832553tRNA (guanine-N7-)-methyltransferaseF:tRNA (guanine-N7-)-methyltransferase activity;P:acetate biosynthetic process from carbon monoxide, methanol oxidation, tRNA modification;C:cellular_component unknown;BOMFPO.I.C.G.H.G.
52.799.842.6At2g43650818967EMB2777 (EMBRYO DEFECTIVE 2777)F:molecular_function unknown;P:unknown;C:unknown;MOBFPVAO.I.C.G.H.G.
52.699.896.0At3g10080820169germin-like protein, putativeF:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PBFOMO.I.C.G.H.G.
52.699.830.7At4g23720828472unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PO.I.C.G.H.G.
52.599.8102.9At2g45860819194unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
51.399.836.2At5g25800832649exonuclease family proteinF:exonuclease activity, nucleic acid binding;P:unknown;C:intracellular;MFOPBVO.I.C.G.H.G.
51.199.8149.2At2g43290818931MSS3 (multicopy suppressors of snf4 deficiency in yeast 3)Encodes calmodulin-like MSS3.O.I.C.G.H.G.
50.199.8273.5At2g4486081909560S ribosomal protein L24, putativeF:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, nucleolus;MOAFPBO.I.C.G.H.G.
50.199.881.8At1g68360843165zinc finger protein-relatedF:transcription factor activity;P:regulation of transcription;C:intracellular;PMOO.I.C.G.H.G.
48.699.855.1At5g61480836269leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
48.599.8134.9At3g46940823847deoxyuridine 5'-triphosphate nucleotidohydrolase familyF:hydrolase activity, dUTP diphosphatase activity;P:2'-deoxyribonucleotide metabolic process, dUTP metabolic process;C:cellular_component unknown;BOVMFPAO.I.C.G.H.G.
48.299.816.1At3g481303769680-ribosomal protein L13 homologO.I.C.G.H.G.
47.299.859.1At3g16870820942zinc finger (GATA type) family proteinF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;FPMOO.I.C.G.H.G.
47.099.841.0At5g10520830917RBK1 (Rop Binding protein Kinases 1)F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:defense response, incompatible interaction;C:cytosol, endomembrane system;MPOBFVAO.I.C.G.H.G.
46.999.834.5At5g12220831096las1-like family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPO.I.C.G.H.G.
45.699.817.5At3g49770824139unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
45.299.839.8At1g31320840020LBD4 (LOB DOMAIN-CONTAINING PROTEIN 4)F:unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
44.899.840.6At2g26710817212BAS1 (PHYB ACTIVATION TAGGED SUPPRESSOR 1)Encodes a member of the cytochrome p450 family that serves as a control point between multiple photoreceptor systems and brassinosteroid signal transduction. Involved in brassinolide metabolism. Mediates response to a variety of light signals including hypocotyl elongation and cotyledon expansion.O.I.C.G.H.G.
43.799.8108.1At2g17280816234phosphoglycerate/bisphosphoglycerate mutase family proteinF:catalytic activity;P:metabolic process;C:cellular_component unknown;FOPBO.I.C.G.H.G.
41.699.8200.8At1g52930841726brix domain-containing proteinF:unknown;P:unknown;C:cellular_component unknown;MFOPO.I.C.G.H.G.
40.799.884.0At1g33940840291-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.C.G.H.G.
40.299.841.5At5g12980831138rcd1-like cell differentiation protein, putativeF:molecular_function unknown;P:multicellular organismal development;C:unknown;MFPOO.I.C.G.H.G.
39.799.8324.1At3g1678082093160S ribosomal protein L19 (RPL19B)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, plasma membrane;MAOFPO.I.C.G.H.G.
39.499.821.5At2g40640818659-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
38.999.820.6At2g39820818569eukaryotic translation initiation factor 6, putative / eIF-6, putativeF:ribosome binding, translation initiation factor activity;P:translational initiation, mature ribosome assembly;C:cellular_component unknown;AOMFPO.I.C.G.H.G.
38.499.838.7At5g50130835078short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.
38.299.842.7At5g53830835464VQ motif-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFBMO.I.C.G.H.G.
38.299.827.4At2g43140818916DNA binding / transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOBFO.I.C.G.H.G.
37.499.789.1At3g27360822357histone H3F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPOO.I.C.G.H.G.
37.099.780.2At5g38890833880exoribonuclease-relatedF:RNA binding;P:biological_process unknown;C:cellular_component unknown;FMAOPO.I.C.G.H.G.
36.899.742.5At3g50410824205OBP1 (OBF BINDING PROTEIN 1)Arabidopsis Dof protein containing a single 51-amino acid zinc finger DNA-binding domain, which may play an important roles in plant growth and development.O.I.C.G.H.G.
36.599.780.0At5g20600832182-F:molecular_function unknown;P:rRNA processing;C:preribosome, small subunit precursor;MFOPBO.I.C.G.H.G.
36.199.7202.7At2g42570818857unknown proteinF:unknown;P:biological_process unknown;C:vacuole;PO.I.C.G.H.G.
36.199.767.2At2g39795818565mitochondrial glycoprotein family protein / MAM33 family proteinF:unknown;P:unknown;C:mitochondrion, mitochondrial matrix;PFOMBO.I.C.G.H.G.
36.099.7100.4At2g44460819053BGLU28 (BETA GLUCOSIDASE 28)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:membrane;BOPMFAO.I.C.G.H.G.
35.599.77.2At4g13985827034FBD1 (FBD-ASSOCIATED F-BOX PROTEIN)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
35.499.764.3At2g46920819306POL (poltergeist)Pol mutations are recessive, partial suppressors of meristem defects in strong clv1 and clv3 mutants, and nearly complete suppressors of weak clv1 mutants. Single mutants appear normal. Acts downstream of the CLV signaling pathway in meristem development and is required together with PLL1 for stem-cell maintenance through the regulation of WUS.O.I.C.G.H.G.
35.399.795.8At3g16810820934APUM24 (Arabidopsis Pumilio 24)F:RNA binding, binding;P:unknown;C:nucleolus;MFPOBO.I.C.G.H.G.
35.299.7157.0At2g42740818874RPL16Aencodes a cytosolic ribosomal protein L16, which is a constituent of 60S large ribosomal complex. Gene is expressed in root stele and anthers and expression is induced by auxin treatment.O.I.C.G.H.G.
34.999.736.1At5g18750831993DNAJ heat shock N-terminal domain-containing proteinF:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMPFAVO.I.C.G.H.G.
34.899.723.2At1g50400841462porin family proteinF:voltage-gated anion channel activity;P:anion transport;C:mitochondrial outer membrane;MFOPO.I.C.G.H.G.
34.599.732.6At3g16980820954NRPB9AOne of two highly similar, non-catalytic subunits common to nuclear DNA-directed RNA polymerases II, IV and V; homologous to budding yeast RPB9. Appears to be redundant with At4g16265O.I.C.G.H.G.
34.399.740.7At1g07840837299leucine zipper factor-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBO.I.C.G.H.G.
34.299.7118.1At2g45440819152DHDPS2 (DIHYDRODIPICOLINATE SYNTHASE)Encodes a protein that likely has dihydropicolinate synthase activity based on its mutant phenotype of decreased lysine levels and increased aspartate levels. The mutant also has increased levels of threonine. The enzyme is predicted to localize to the chloroplast.O.I.C.G.H.G.
34.299.783.6At2g39870818574unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO.I.C.G.H.G.
34.299.720.6At5g08600830761U3 ribonucleoprotein (Utp) family proteinF:molecular_function unknown;P:rRNA processing;C:small-subunit processome;OMFBPVAO.I.C.G.H.G.
34.099.738.9At2g20850816618SRF1 (strubbelig receptor family 1)F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVAO.I.C.G.H.G.
33.299.724.5At5g51670835241unknown proteinF:unknown;P:biological_process unknown;C:chloroplast;POBO.I.C.G.H.G.
33.199.745.2At2g28660817415copper-binding family proteinF:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:chloroplast;OPMBFO.I.C.G.H.G.
32.999.7175.1At5g20620832184UBQ4encodes a ubiquitin polyprotein.O.I.C.G.H.G.
32.899.718.4At5g18920832010unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFO.I.C.G.H.G.
32.699.769.8At2g19670816486PRMT1A (PROTEIN ARGININE METHYLTRANSFERASE 1A)F:protein-arginine N-methyltransferase activity;P:unknown;C:unknown;MBOPFAO.I.C.G.H.G.
32.699.748.0At1g60850842377ATRPAC42F:DNA-directed RNA polymerase activity, protein dimerization activity, DNA binding;P:transcription;C:nucleolus;OMFAPO.I.C.G.H.G.
32.599.750.6At1g18320838412mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family proteinF:protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity;P:protein transport;C:mitochondrial inner membrane, mitochondrial inner membrane presequence translocase complex;MFPOO.I.C.G.H.G.
32.199.741.9At5g10510830915AIL6 (AINTEGUMENTA-LIKE 6)Encodes an AP2-domain transcription factor involved in root stem cell identity and root development.O.I.C.G.H.G.
31.599.7244.0At2g39700818553ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4)putative expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.O.I.C.G.H.G.
31.399.760.8At5g10010830863unknown proteinF:molecular_function unknown;P:biological_process unknown;C:nucleolus;MOFBPVAO.I.C.G.H.G.
31.299.726.4At5g02220831792unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
30.999.753.9At3g16840820937ATP binding / ATP-dependent helicase/ helicase/ nucleic acid bindingF:helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity;P:biological_process unknown;C:cellular_component unknown;MOBFPAVO.I.C.G.H.G.
30.899.723.8At2g45280819136ATRAD51CEncodes a protein similar to RAD51C involved in double stranded break repair via homologous recombination. Sensitive to DSB induced by Mitomycin C and gamma irradiation, interacts with Atxrcc3 in yeast two-hybrid assay. Required for female meiosis but not critical for mitosis under normal conditions.O.I.C.G.H.G.
30.499.79.9At4g16030827287structural constituent of ribosomeF:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MOFPO.I.C.G.H.G.
30.299.730.5At1g15580838128IAA5 (INDOLE-3-ACETIC ACID INDUCIBLE 5)auxin induced proteinO.I.C.G.H.G.
29.599.733.8At1g2310083891810 kDa chaperonin, putativeF:ATP binding;P:protein folding;C:mitochondrion;BOMPFVO.I.C.G.H.G.
29.399.784.1At1g42440840848-F:molecular_function unknown;P:ribosome biogenesis;C:nucleus;MOFBPVO.I.C.G.H.G.



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