Microarray experiments to specifically-expressed genes

GSM ID -
Assay name E-ATMX-1-raw-cel-1112746209
GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
1339.2100.0397.8At3g04170819572germin-like protein, putativeF:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFBOO.I.C.G.H.G.
1053.3100.0293.2At1g62210842517unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPBOO.I.C.G.H.G.
933.9100.0494.8At2g41390818737unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
867.2100.0113.4At3g04180819573germin-like protein, putativeF:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOBAO.I.C.G.H.G.
667.3100.081.4At3g04150819570germin-like protein, putativeF:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOO.I.C.G.H.G.
642.4100.0480.4At1g19900838578glyoxal oxidase-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BFPOO.I.C.G.H.G.
637.7100.0233.0At3g61880825361CYP78A9 (CYTOCHROME P450 78A9)Encodes a cytochrome p450 monooxygenase. Overexpression of this gene allows fruit growth independently of fertilization. The gene is normally expressed only in floral organs(during the Arabidopsis stage 14 flower) and in the funiculus at anthesis.O.I.C.G.H.G.
318.7100.057.3At5g07500830642PEI1Encodes an embryo-specific zinc finger transcription factor required for heart-stage embryo formation.O.I.C.G.H.G.
313.8100.075.4At4g25980828704cationic peroxidase, putativeF:peroxidase activity;P:response to oxidative stress;C:endomembrane system;PFOMO.I.C.G.H.G.
295.3100.0132.1At3g60730825244pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO.I.C.G.H.G.
292.1100.0430.9At4g26740828781ATS1 (ARABIDOPSIS THALIANA SEED GENE 1)Gene is expressed preferentially in the embryo, has similarity to a rice ABA-responsive gene, EFA27.O.I.C.G.H.G.
287.3100.0432.7At3g63040825479unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
286.3100.0199.9At4g32290829363unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POBO.I.C.G.H.G.
280.2100.0107.1At5g23190832383CYP86B1cytochrome P450 CYP86B1, nuclear gene for chloroplast productO.I.C.G.H.G.
276.6100.086.5At5g51490835223pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFOMO.I.C.G.H.G.
275.2100.0520.8At5g07190830610ATS3 (ARABIDOPSIS THALIANA SEED GENE 3)Gene is expressed preferentially in the embryo and encodes a unique protein of unknown function.O.I.C.G.H.G.
273.2100.068.2At3g04200819575germin-like protein, putativeF:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOO.I.C.G.H.G.
270.0100.0204.3At4g34520829603KCS18Encodes KCS18, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).O.I.C.G.H.G.
261.2100.0546.7At1g03890839379cupin family proteinF:nutrient reservoir activity;P:biological_process unknown;C:endomembrane system;PBMOO.I.C.G.H.G.
260.0100.086.8At1g68380843167unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
252.3100.0445.1At1g17810838359BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN)beta-tonoplast intrinsic protein (beta-TIP) mRNA, completeO.I.C.G.H.G.
245.3100.0534.8At1g62290842526aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis, lipid metabolic process;C:vacuole;MFOPBO.I.C.G.H.G.
233.8100.0192.3At3g18570821388glycine-rich protein / oleosinF:molecular_function unknown;P:lipid storage;C:monolayer-surrounded lipid storage body, integral to membrane, membrane;PO.I.C.G.H.G.
231.5100.0800.3At4g25140828617OLEO1 (OLEOSIN 1)Encodes oleosin1, a protein found in oil bodies, involved in seed lipid accumulation. Suppression of OLEO1 (and OLEO2) resulted in an aberrant phenotype of embryo cells that contain unusually large oilbodies that are not normally observed in seeds. Changes in the size of oilbodies caused disruption of storage organelles, altering accumulation of lipids and proteins and causing delay in germination. Functions in freezing tolerance of seeds.O.I.C.G.H.G.
230.6100.0416.0At2g34700818035pollen Ole e 1 allergen and extensin family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
227.9100.0745.7At1g62000842495unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOFO.I.C.G.H.G.
226.3100.0130.4At3g12203820399scpl17 (serine carboxypeptidase-like 17)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOBO.I.C.G.H.G.
222.5100.0570.5At1g14950838060major latex protein-related / MLP-relatedF:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;PO.I.C.G.H.G.
219.2100.097.7At5g09640830823SCPL19encodes a serine carboxypeptidase-like (SCPL) protein. Mutants accumulate sinapoylglucose instead of sinapoylcholine, and have increased levels of choline and decreased activity of the enzyme sinapoylglucose:choline sinapoyltransferase.O.I.C.G.H.G.
215.5100.0676.8At3g01570821106glycine-rich protein / oleosinF:molecular_function unknown;P:lipid storage;C:monolayer-surrounded lipid storage body, integral to membrane, membrane;PO.I.C.G.H.G.
213.6100.0383.9At4g36700829823cupin family proteinF:nutrient reservoir activity;P:biological_process unknown;C:endomembrane system;MOFBPVAO.I.C.G.H.G.
210.7100.060.1At5g44360834462FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAMO.I.C.G.H.G.
203.9100.057.5At1g78500844186pentacyclic triterpene synthase, putativeEncodes a protein with pentacyclic triterpene synthase activity. In addition to the compounds lupeol, α-amyrin and bauerenol, this enzyme was also shown to produce two seco-triterpenes: α- and β-seco-amyrin.O.I.C.G.H.G.
198.6100.0136.3At1g11170837658unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBO.I.C.G.H.G.
197.3100.0482.1At5g51210835196OLEO3 (OLEOSIN3)Encodes oleosin3, a protein found in oil bodies, involved in seed lipid accumulation.O.I.C.G.H.G.
192.8100.0454.9At3g62730825448unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBO.I.C.G.H.G.
189.2100.0520.8At4g271508288232S seed storage protein 2 / 2S albumin storage protein / NWMU2-2S albumin 2F:lipid binding, nutrient reservoir activity;P:lipid transport;C:endomembrane system;POO.I.C.G.H.G.
188.8100.0561.3At1g73190843653TIP3Moves to the Protein Storage Vacuole in a Golgi independent mannerO.I.C.G.H.G.
186.1100.0312.9At5g09480830807hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBMFPVAO.I.C.G.H.G.
183.2100.0630.4At3g27660822388OLEO4 (OLEOSIN 4)Encodes oleosin4 (Plant Cell, 2006, 18:1961), a protein found in oil bodies, involved in seed lipid accumulation. Functions in freezing tolerance of seeds. Note: also referred to as OLE3 in Plant Journal 2008, 55:798.O.I.C.G.H.G.
180.4100.0581.2At5g59170836035proline-rich family proteinF:unknown;P:unknown;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
178.5100.0974.4At1g03880839383CRU2 (CRUCIFERIN 2)Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.O.I.C.G.H.G.
177.7100.0583.1At2g28490817397cupin family proteinF:nutrient reservoir activity;P:biological_process unknown;C:endomembrane system;BMPOFVAO.I.C.G.H.G.
175.2100.0170.8At5g07200830611YAP169encodes a gibberellin 20-oxidase.O.I.C.G.H.G.
173.9100.0671.7At5g40420834040OLEO2 (OLEOSIN 2)Encodes oleosin2, a protein found in oil bodies, involved in seed lipid accumulation. Suppression of OLEO1 (and OLEO2) resulted in an aberrant phenotype of embryo cells that contain unusually large oilbodies that are not normally observed in seeds. Changes in the size of oilbodies caused disruption of storage organelles, altering accumulation of lipids and proteins and causing delay in germination. Functions in freezing tolerance of seeds.O.I.C.G.H.G.
171.0100.0129.8At1g18100838390E12A11E12A11 protein (E12A11)O.I.C.G.H.G.
169.2100.0820.7At4g271708288252S seed storage protein 4 / 2S albumin storage protein / NWMU2-2S albumin 4F:lipid binding, nutrient reservoir activity;P:lipid transport;C:endomembrane system;POO.I.C.G.H.G.
169.0100.0417.8At1g54860841925unknown proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PO.I.C.G.H.G.
168.4100.029.5At3g44460823571DPBF2basic leucine zipper transcription factor (BZIP67), identical to basic leucine zipper transcription factor GI:18656053 from (Arabidopsis thaliana); identical to cDNA basic leucine zipper transcription factor (atbzip67 gene) GI:18656052. Located in the nucleus and expressed during seed maturation in the cotyledons.O.I.C.G.H.G.
154.099.9465.1At5g50600835129AtHSD1 (hydroxysteroid dehydrogenase 1)F:oxidoreductase activity, binding, catalytic activity;P:response to brassinosteroid stimulus, response to abscisic acid stimulus;C:endomembrane system;BOMFPAVO.I.C.G.H.G.
153.699.9660.4At4g271408288222S seed storage protein 1 / 2S albumin storage protein / NWMU1-2S albumin 1F:lipid binding, nutrient reservoir activity;P:lipid transport;C:endomembrane system;PMOO.I.C.G.H.G.
150.699.976.7At2g25940817135ALPHA-VPE (alpha-vacuolar processing enzyme)Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteinases that is expressed in vegetative organs and is upregulated in association with various types of cell death and under stressed conditions.O.I.C.G.H.G.
149.599.9315.4At5g45690834608unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPFO.I.C.G.H.G.
146.799.9395.7At1g05510837053-Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.O.I.C.G.H.G.
145.999.9380.0At1g54870841926binding / catalytic/ oxidoreductaseF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:chloroplast;BOMFPAVO.I.C.G.H.G.
145.099.9142.4At5g55240835617caleosin-related family protein / embryo-specific protein, putativeF:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;PFOO.I.C.G.H.G.
144.999.9182.4At5g49190834978SUS2 (SUCROSE SYNTHASE 2)Encodes a putative sucrose synthase (SUS2). The activity of the enzyme could not be assayed as proved to be insoluble (PMID 17257168). Induced specifically by O(2) deficiency.O.I.C.G.H.G.
143.899.9461.8At1g48130841231ATPER1encodes a protein similar to the 1-cysteine (1-Cys) peroxiredoxin family of antioxidants. Expression is limited to seed (aleurone and embryo) and is not induced by ABA or drought.O.I.C.G.H.G.
136.999.9196.2At5g48100834862TT10 (TRANSPARENT TESTA 10)Encodes a protein that is similar to laccase-like polyphenol oxidases. Involved in lignin and flavonoids biosynthesis. It has four conserved copper binding domains. Expressed in developing testa, where it colocalizes with the flavonoid end products proanthocyanidins and flavonols. Mutant plants exhibited a delay in developmentally determined browning of the testa, characterized by the pale brown color of seed coat. The tt10 mutant seeds accumulate more epicatechin monomers and more soluble proanthocyanidins than wild-type seeds. Flavonol composition was also affected in tt10 seeds, which exhibited a higher ratio of quercetin rhamnoside monomers versus dimers than wild-type seeds.O.I.C.G.H.G.
131.799.9796.8At5g44120834435CRA1 (CRUCIFERINA)Encodes a 12S seed storage protein. The Landsberg erecta genome contains another copy of 12S globulin gene, CRA2, which is located tandemly with CRA1. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.O.I.C.G.H.G.
131.499.995.5At2g23640816896reticulon family protein (RTNLB13)F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MPOO.I.C.G.H.G.
131.499.927.8At1g65880842900BZO1 (BENZOYLOXYGLUCOSINOLATE 1)Encodes a benzoate-CoA ligase. Involved in the biosynthesis of benzoyloxyglucosinolate in Arabidopsis seeds.O.I.C.G.H.G.
130.899.9871.9At4g28520828970CRU3 (CRUCIFERIN 3)Encodes a 12S seed storage protein that is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.O.I.C.G.H.G.
130.599.955.0At5g47635834814unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
130.299.949.7At5g64190836540unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
128.899.9247.2At3g56350824802superoxide dismutase (Mn), putative / manganese superoxide dismutase, putativeF:superoxide dismutase activity, metal ion binding;P:superoxide metabolic process, removal of superoxide radicals;C:mitochondrion, endomembrane system;BOFMPAVO.I.C.G.H.G.
125.499.9532.2At3g15670820810late embryogenesis abundant protein, putative / LEA protein, putativeF:molecular_function unknown;P:embryonic development ending in seed dormancy;C:nucleus;BOMPFVAO.I.C.G.H.G.
122.599.9279.4At1g120108377531-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putativeencodes a protein whose sequence is similar to 1-amino-cyclopropane-1-carboxylic acid oxidaseO.I.C.G.H.G.
119.299.9557.6At1g04560839491AWPM-19-like membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
118.099.9652.6At5g54740835563protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding, nutrient reservoir activity;P:lipid transport, pollen development;C:endomembrane system;POO.I.C.G.H.G.
113.299.9225.4At2g03090814838ATEXPA15 (ARABIDOPSIS THALIANA EXPANSIN A15)member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.O.I.C.G.H.G.
112.199.9129.3At5g63560836475transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO.I.C.G.H.G.
111.699.9532.2At4g27160828824AT2S3F:lipid binding, nutrient reservoir activity;P:lipid transport;C:endomembrane system;POO.I.C.G.H.G.
111.299.9107.9At1g09380837460integral membrane family protein / nodulin MtN21-relatedF:unknown;P:unknown;C:endomembrane system, membrane;BOPAMFO.I.C.G.H.G.
109.799.9499.7At3g22640821835PAP85F:nutrient reservoir activity;P:biological_process unknown;C:plant-type cell wall;POMO.I.C.G.H.G.
109.699.957.4At1g01250839322AP2 domain-containing transcription factor, putativeencodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.O.I.C.G.H.G.
108.299.9117.3At5g15740831430unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
107.899.9222.5At1g70670843404caleosin-related family proteinF:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;PFOO.I.C.G.H.G.
107.599.9247.1At2g15010815990thionin, putativePredicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.O.I.C.G.H.G.
103.399.9432.0At2g27380817282ATEPR1Encodes an extensin like gene involved in seed germination.O.I.C.G.H.G.
97.099.9124.6At5g50260835091cysteine proteinase, putativeF:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAFO.I.C.G.H.G.
95.199.9210.1At5g13170831156SAG29 (SENESCENCE-ASSOCIATED PROTEIN 29)F:unknown;P:unknown;C:endomembrane system, integral to membrane, membrane;PMOBO.I.C.G.H.G.
93.199.9138.9At1g52880841721NAM (NO APICAL MERISTEM)Transcription factor with a NAC domain. Homologous to the petunia gene NAM which is required for the development of the shoot. Expressed in the embryo.O.I.C.G.H.G.
93.099.9270.2At1g47540841163trypsin inhibitor, putativeF:ion channel inhibitor activity;P:defense response;C:endomembrane system, extracellular region;POO.I.C.G.H.G.
92.099.989.4At1g29680839845unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPFO.I.C.G.H.G.
88.799.988.7At5g62800836401seven in absentia (SINA) family proteinF:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process;C:nucleus;MPOFO.I.C.G.H.G.
87.599.9193.4At5g60460836167sec61beta family proteinF:protein transporter activity;P:protein transport;C:plasma membrane;MFPOBO.I.C.G.H.G.
87.599.995.1At3g53510824519ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMAFPVO.I.C.G.H.G.
85.599.938.6At2g05910815143unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO.I.C.G.H.G.
85.499.9131.6At4g10020826593AtHSD5 (hydroxysteroid dehydrogenase 5)F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAVO.I.C.G.H.G.
79.299.995.0At3g08860820034alanine--glyoxylate aminotransferase, putative / beta-alanine-pyruvate aminotransferase, putative / AGT, putativeF:pyridoxal phosphate binding, transaminase activity, catalytic activity, alanine-glyoxylate transaminase activity;P:unknown;C:mitochondrion;BOMFAPVO.I.C.G.H.G.
78.999.955.0At3g58740825043CSY1 (CITRATE SYNTHASE 1)Encodes a peroxisomal citrate synthase that is expressed in siliques and developing seeds.O.I.C.G.H.G.
76.999.927.8At3g04370819592PDLP4 (PLASMODESMATA-LOCATED PROTEIN 4)Encodes a plasmodesmal protein that may be involved in the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain.O.I.C.G.H.G.
76.499.936.0At2g34315817993disease resistance protein-relatedF:GTP binding;P:biological_process unknown;C:cellular_component unknown;PMFO.I.C.G.H.G.
76.099.976.8At2g18360816351hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:endomembrane system;BOMPFAO.I.C.G.H.G.
75.899.926.7At3g11180820289oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity, iron ion binding;P:unknown;C:cellular_component unknown;POBFMO.I.C.G.H.G.
75.599.941.8At4g16620827363integral membrane family protein / nodulin MtN21-relatedF:molecular_function unknown;P:unknown;C:membrane;PBOFAMO.I.C.G.H.G.
75.399.927.9At3g10200820182dehydration-responsive protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOMFO.I.C.G.H.G.
74.699.960.7At5g45830834623DOG1 (DELAY OF GERMINATION 1)Encodes DOG1 (DELAY OF GERMINATION 1). A quantitative trait locus involved in the control of seed dormancy. Belongs to a novel plant-specific gene family whose members include: DOG1-like 1-4 (DOGL1-4, At4g18660, At4g18680, At4g18690, At4g18650 respectively) and DOG1. DOG1 expression is seed-specific.O.I.C.G.H.G.
71.399.9117.8At2g40460818640proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport, response to nematode;C:membrane;BPMOFO.I.C.G.H.G.



Back to the CoP portal site

Back to the KAGIANA project homepage