CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID -

Assay name E-ATMX-1-raw-cel-1112746095

GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
949.8 100.0 278.4 At1g62210 842517 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPBO O.I. C.G. H.G.
587.4 100.0 392.4 At2g41390 818737 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
530.1 100.0 436.4 At1g19900 838578 glyoxal oxidase-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BFPO O.I. C.G. H.G.
496.3 100.0 242.2 At3g04170 819572 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFBO O.I. C.G. H.G.
490.4 100.0 91.4 At3g04200 819575 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFO O.I. C.G. H.G.
450.8 100.0 110.5 At5g51490 835223 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFOM O.I. C.G. H.G.
390.3 100.0 63.4 At5g07500 830642 PEI1 Encodes an embryo-specific zinc finger transcription factor required for heart-stage embryo formation. O.I. C.G. H.G.
361.8 100.0 73.3 At3g04180 819573 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOBA O.I. C.G. H.G.
335.8 100.0 181.8 At1g18100 838390 E12A11 E12A11 protein (E12A11) O.I. C.G. H.G.
324.0 100.0 76.6 At4g25980 828704 cationic peroxidase, putative F:peroxidase activity;P:response to oxidative stress;C:endomembrane system;PFOM O.I. C.G. H.G.
291.3 100.0 467.6 At2g34700 818035 pollen Ole e 1 allergen and extensin family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
268.3 100.0 203.6 At4g34520 829603 KCS18 Encodes KCS18, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). O.I. C.G. H.G.
254.0 100.0 547.0 At5g51210 835196 OLEO3 (OLEOSIN3) Encodes oleosin3, a protein found in oil bodies, involved in seed lipid accumulation. O.I. C.G. H.G.
249.4 100.0 403.1 At3g63040 825479 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
247.3 100.0 65.1 At5g44360 834462 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAM O.I. C.G. H.G.
243.6 100.0 99.9 At5g23190 832383 CYP86B1 cytochrome P450 CYP86B1, nuclear gene for chloroplast product O.I. C.G. H.G.
239.6 100.0 96.8 At2g25940 817135 ALPHA-VPE (alpha-vacuolar processing enzyme) Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteinases that is expressed in vegetative organs and is upregulated in association with various types of cell death and under stressed conditions. O.I. C.G. H.G.
227.6 100.0 422.7 At1g17810 838359 BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN) beta-tonoplast intrinsic protein (beta-TIP) mRNA, complete O.I. C.G. H.G.
227.2 100.0 473.1 At5g07190 830610 ATS3 (ARABIDOPSIS THALIANA SEED GENE 3) Gene is expressed preferentially in the embryo and encodes a unique protein of unknown function. O.I. C.G. H.G.
226.0 100.0 99.2 At5g09640 830823 SCPL19 encodes a serine carboxypeptidase-like (SCPL) protein. Mutants accumulate sinapoylglucose instead of sinapoylcholine, and have increased levels of choline and decreased activity of the enzyme sinapoylglucose:choline sinapoyltransferase. O.I. C.G. H.G.
222.1 100.0 375.7 At4g26740 828781 ATS1 (ARABIDOPSIS THALIANA SEED GENE 1) Gene is expressed preferentially in the embryo, has similarity to a rice ABA-responsive gene, EFA27. O.I. C.G. H.G.
218.7 100.0 91.6 At3g58740 825043 CSY1 (CITRATE SYNTHASE 1) Encodes a peroxisomal citrate synthase that is expressed in siliques and developing seeds. O.I. C.G. H.G.
216.3 100.0 678.0 At3g01570 821106 glycine-rich protein / oleosin F:molecular_function unknown;P:lipid storage;C:monolayer-surrounded lipid storage body, integral to membrane, membrane;P O.I. C.G. H.G.
215.1 100.0 189.3 At5g07200 830611 YAP169 encodes a gibberellin 20-oxidase. O.I. C.G. H.G.
206.7 100.0 486.3 At1g03890 839379 cupin family protein F:nutrient reservoir activity;P:biological_process unknown;C:endomembrane system;PBMO O.I. C.G. H.G.
203.9 100.0 57.5 At1g78500 844186 pentacyclic triterpene synthase, putative Encodes a protein with pentacyclic triterpene synthase activity. In addition to the compounds lupeol, α-amyrin and bauerenol, this enzyme was also shown to produce two seco-triterpenes: α- and β-seco-amyrin. O.I. C.G. H.G.
201.1 100.0 167.6 At4g32290 829363 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB O.I. C.G. H.G.
199.9 100.0 214.3 At5g49190 834978 SUS2 (SUCROSE SYNTHASE 2) Encodes a putative sucrose synthase (SUS2). The activity of the enzyme could not be assayed as proved to be insoluble (PMID 17257168). Induced specifically by O(2) deficiency. O.I. C.G. H.G.
198.9 100.0 44.4 At3g04150 819570 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFO O.I. C.G. H.G.
192.5 100.0 75.0 At3g25160 822107 ER lumen protein retaining receptor family protein F:ER retention sequence binding, receptor activity;P:protein retention in ER lumen, protein transport;C:integral to membrane;MOPF O.I. C.G. H.G.
187.6 100.0 73.7 At1g68380 843167 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
176.0 100.0 434.7 At3g62730 825448 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PB O.I. C.G. H.G.
174.8 100.0 425.0 At1g54860 841925 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P O.I. C.G. H.G.
171.6 100.0 610.1 At3g27660 822388 OLEO4 (OLEOSIN 4) Encodes oleosin4 (Plant Cell, 2006, 18:1961), a protein found in oil bodies, involved in seed lipid accumulation. Functions in freezing tolerance of seeds. Note: also referred to as OLE3 in Plant Journal 2008, 55:798. O.I. C.G. H.G.
168.9 100.0 71.2 At1g01250 839322 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. O.I. C.G. H.G.
168.9 100.0 39.8 At3g11180 820289 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, iron ion binding;P:unknown;C:cellular_component unknown;POBFM O.I. C.G. H.G.
168.6 100.0 56.6 At5g64190 836540 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
168.2 100.0 163.1 At3g18570 821388 glycine-rich protein / oleosin F:molecular_function unknown;P:lipid storage;C:monolayer-surrounded lipid storage body, integral to membrane, membrane;P O.I. C.G. H.G.
166.8 100.0 441.0 At1g62290 842526 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis, lipid metabolic process;C:vacuole;MFOPB O.I. C.G. H.G.
165.7 100.0 338.1 At4g36700 829823 cupin family protein F:nutrient reservoir activity;P:biological_process unknown;C:endomembrane system;MOFBPVA O.I. C.G. H.G.
165.7 100.0 93.9 At1g10970 837640 ZIP4 (ZINC TRANSPORTER 4 PRECURSOR) A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root and shoot. Expression is regulated by copper, but response to copper deficiency is detected only after three weeks of deficiency. O.I. C.G. H.G.
164.6 100.0 111.2 At3g12203 820399 scpl17 (serine carboxypeptidase-like 17) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB O.I. C.G. H.G.
163.6 99.9 631.6 At1g62000 842495 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOF O.I. C.G. H.G.
162.9 99.9 930.9 At1g03880 839383 CRU2 (CRUCIFERIN 2) Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. O.I. C.G. H.G.
161.2 99.9 667.8 At4g25140 828617 OLEO1 (OLEOSIN 1) Encodes oleosin1, a protein found in oil bodies, involved in seed lipid accumulation. Suppression of OLEO1 (and OLEO2) resulted in an aberrant phenotype of embryo cells that contain unusually large oilbodies that are not normally observed in seeds. Changes in the size of oilbodies caused disruption of storage organelles, altering accumulation of lipids and proteins and causing delay in germination. Functions in freezing tolerance of seeds. O.I. C.G. H.G.
156.1 99.9 540.7 At5g59170 836035 proline-rich family protein F:unknown;P:unknown;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
153.5 99.9 95.2 At3g60730 825244 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM O.I. C.G. H.G.
147.5 99.9 306.6 At1g12010 837753 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative encodes a protein whose sequence is similar to 1-amino-cyclopropane-1-carboxylic acid oxidase O.I. C.G. H.G.
145.8 99.9 122.8 At3g53510 824519 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMAFPV O.I. C.G. H.G.
142.5 99.9 753.3 At4g27170 828825 2S seed storage protein 4 / 2S albumin storage protein / NWMU2-2S albumin 4 F:lipid binding, nutrient reservoir activity;P:lipid transport;C:endomembrane system;PO O.I. C.G. H.G.
140.6 99.9 37.6 At3g04370 819592 PDLP4 (PLASMODESMATA-LOCATED PROTEIN 4) Encodes a plasmodesmal protein that may be involved in the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain. O.I. C.G. H.G.
140.6 99.9 26.2 At1g73290 843663 scpl5 (serine carboxypeptidase-like 5) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO O.I. C.G. H.G.
139.2 99.9 28.6 At1g65880 842900 BZO1 (BENZOYLOXYGLUCOSINOLATE 1) Encodes a benzoate-CoA ligase. Involved in the biosynthesis of benzoyloxyglucosinolate in Arabidopsis seeds. O.I. C.G. H.G.
138.7 99.9 270.1 At5g09480 830807 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBMFPVA O.I. C.G. H.G.
137.9 99.9 625.6 At4g27140 828822 2S seed storage protein 1 / 2S albumin storage protein / NWMU1-2S albumin 1 F:lipid binding, nutrient reservoir activity;P:lipid transport;C:endomembrane system;PMO O.I. C.G. H.G.
131.8 99.9 55.3 At5g47635 834814 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
127.5 99.9 133.5 At5g55240 835617 caleosin-related family protein / embryo-specific protein, putative F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
126.6 99.9 122.0 At1g68850 843218 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM O.I. C.G. H.G.
124.8 99.9 141.3 At5g50260 835091 cysteine proteinase, putative F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF O.I. C.G. H.G.
123.8 99.9 92.7 At2g23640 816896 reticulon family protein (RTNLB13) F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MPO O.I. C.G. H.G.
123.5 99.9 107.5 At1g11170 837658 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB O.I. C.G. H.G.
123.4 99.9 171.6 At1g56170 842070 NF-YC2 (NUCLEAR FACTOR Y, SUBUNIT C2) Encodes a protein with similarity to a subunit of the CCAAT promoter motif binding complex of yeast.One of two members of this class (HAP5B) and expressed in vegetative and reproductive tissues O.I. C.G. H.G.
123.0 99.9 22.1 At1g25410 839127 ATIPT6 AB061404 Arabidopsis thaliana AtIPT6 mRNA for cytokinin synthase, complete cds O.I. C.G. H.G.
121.7 99.9 79.4 At5g47670 834818 NF-YB6 (NUCLEAR FACTOR Y, SUBUNIT B6) F:transcription activator binding, transcription factor activity, transcription activator activity;P:positive regulation of gene-specific transcription, regulation of transcription;C:nucleus, intracellular;MPFOA O.I. C.G. H.G.
120.1 99.9 419.1 At1g14950 838060 major latex protein-related / MLP-related F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
116.9 99.9 231.7 At1g70670 843404 caleosin-related family protein F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
116.8 99.9 75.5 At2g40370 818630 LAC5 (laccase 5) putative laccase, a member of laccase family of genes (17 members in Arabidopsis). O.I. C.G. H.G.
115.3 99.9 469.7 At2g28490 817397 cupin family protein F:nutrient reservoir activity;P:biological_process unknown;C:endomembrane system;BMPOFVA O.I. C.G. H.G.
114.6 99.9 405.3 At4g27150 828823 2S seed storage protein 2 / 2S albumin storage protein / NWMU2-2S albumin 2 F:lipid binding, nutrient reservoir activity;P:lipid transport;C:endomembrane system;PO O.I. C.G. H.G.
109.8 99.9 249.8 At2g15010 815990 thionin, putative Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660. O.I. C.G. H.G.
104.5 99.9 520.6 At5g40420 834040 OLEO2 (OLEOSIN 2) Encodes oleosin2, a protein found in oil bodies, involved in seed lipid accumulation. Suppression of OLEO1 (and OLEO2) resulted in an aberrant phenotype of embryo cells that contain unusually large oilbodies that are not normally observed in seeds. Changes in the size of oilbodies caused disruption of storage organelles, altering accumulation of lipids and proteins and causing delay in germination. Functions in freezing tolerance of seeds. O.I. C.G. H.G.
103.8 99.9 210.6 At5g60460 836167 sec61beta family protein F:protein transporter activity;P:protein transport;C:plasma membrane;MFPOB O.I. C.G. H.G.
103.6 99.9 95.9 At5g62800 836401 seven in absentia (SINA) family protein F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process;C:nucleus;MPOF O.I. C.G. H.G.
102.2 99.9 260.8 At5g45690 834608 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPF O.I. C.G. H.G.
99.0 99.9 758.5 At4g28520 828970 CRU3 (CRUCIFERIN 3) Encodes a 12S seed storage protein that is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. O.I. C.G. H.G.
98.4 99.9 688.6 At5g44120 834435 CRA1 (CRUCIFERINA) Encodes a 12S seed storage protein. The Landsberg erecta genome contains another copy of 12S globulin gene, CRA2, which is located tandemly with CRA1. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. O.I. C.G. H.G.
95.5 99.9 399.3 At1g73190 843653 TIP3 Moves to the Protein Storage Vacuole in a Golgi independent manner O.I. C.G. H.G.
94.5 99.9 317.6 At1g05510 837053 - Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. O.I. C.G. H.G.
92.1 99.9 483.6 At4g27160 828824 AT2S3 F:lipid binding, nutrient reservoir activity;P:lipid transport;C:endomembrane system;PO O.I. C.G. H.G.
92.0 99.9 489.9 At1g04560 839491 AWPM-19-like membrane family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
90.0 99.9 450.9 At3g15670 820810 late embryogenesis abundant protein, putative / LEA protein, putative F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:nucleus;BOMPFVA O.I. C.G. H.G.
89.4 99.9 21.5 At3g44460 823571 DPBF2 basic leucine zipper transcription factor (BZIP67), identical to basic leucine zipper transcription factor GI:18656053 from (Arabidopsis thaliana); identical to cDNA basic leucine zipper transcription factor (atbzip67 gene) GI:18656052. Located in the nucleus and expressed during seed maturation in the cotyledons. O.I. C.G. H.G.
88.8 99.9 449.5 At3g22640 821835 PAP85 F:nutrient reservoir activity;P:biological_process unknown;C:plant-type cell wall;POM O.I. C.G. H.G.
88.7 99.9 155.7 At1g62070 842503 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBF O.I. C.G. H.G.
87.9 99.9 351.3 At5g50600 835129 AtHSD1 (hydroxysteroid dehydrogenase 1) F:oxidoreductase activity, binding, catalytic activity;P:response to brassinosteroid stimulus, response to abscisic acid stimulus;C:endomembrane system;BOMFPAV O.I. C.G. H.G.
87.7 99.9 138.3 At2g34870 818052 MEE26 (maternal effect embryo arrest 26) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:endomembrane system;MPOVFBA O.I. C.G. H.G.
86.3 99.9 133.7 At1g52880 841721 NAM (NO APICAL MERISTEM) Transcription factor with a NAC domain. Homologous to the petunia gene NAM which is required for the development of the shoot. Expressed in the embryo. O.I. C.G. H.G.
85.7 99.9 155.3 At5g48100 834862 TT10 (TRANSPARENT TESTA 10) Encodes a protein that is similar to laccase-like polyphenol oxidases. Involved in lignin and flavonoids biosynthesis. It has four conserved copper binding domains. Expressed in developing testa, where it colocalizes with the flavonoid end products proanthocyanidins and flavonols. Mutant plants exhibited a delay in developmentally determined browning of the testa, characterized by the pale brown color of seed coat. The tt10 mutant seeds accumulate more epicatechin monomers and more soluble proanthocyanidins than wild-type seeds. Flavonol composition was also affected in tt10 seeds, which exhibited a higher ratio of quercetin rhamnoside monomers versus dimers than wild-type seeds. O.I. C.G. H.G.
84.7 99.9 30.2 At2g47750 819387 GH3.9 (PUTATIVE INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE GH3.9) F:molecular_function unknown;P:response to auxin stimulus;C:chloroplast envelope;POBMF O.I. C.G. H.G.
81.9 99.9 84.3 At1g29680 839845 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPF O.I. C.G. H.G.
81.8 99.9 102.0 At5g15740 831430 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
79.6 99.9 280.6 At1g54870 841926 binding / catalytic/ oxidoreductase F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:chloroplast;BOMFPAV O.I. C.G. H.G.
78.8 99.9 118.3 At5g44550 834482 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
78.8 99.9 49.1 At1g04380 839535 2-oxoglutarate-dependent dioxygenase, putative encodes a protein similar to a 2-oxoglutarate-dependent dioxygenase O.I. C.G. H.G.
78.7 99.9 50.2 At3g25260 822120 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;BPMOF O.I. C.G. H.G.
78.2 99.9 90.5 At1g09380 837460 integral membrane family protein / nodulin MtN21-related F:unknown;P:unknown;C:endomembrane system, membrane;BOPAMF O.I. C.G. H.G.
77.4 99.9 114.3 At1g48470 841268 GLN1 Encodes cytosolic glutamine synthase isozyme. Expression of mRNA is not detectable in roots. O.I. C.G. H.G.
76.6 99.9 188.5 At5g13170 831156 SAG29 (SENESCENCE-ASSOCIATED PROTEIN 29) F:unknown;P:unknown;C:endomembrane system, integral to membrane, membrane;PMOB O.I. C.G. H.G.
74.7 99.9 41.5 At4g16620 827363 integral membrane family protein / nodulin MtN21-related F:molecular_function unknown;P:unknown;C:membrane;PBOFAM O.I. C.G. H.G.
74.4 99.9 22.4 At1g53270 841761 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPV O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
949.8	100.0	278.4	At1g62210	842517	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPBO	O.I.	C.G.	H.G.
587.4	100.0	392.4	At2g41390	818737	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
530.1	100.0	436.4	At1g19900	838578	glyoxal oxidase-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BFPO	O.I.	C.G.	H.G.
496.3	100.0	242.2	At3g04170	819572	germin-like protein, putative	F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFBO	O.I.	C.G.	H.G.
490.4	100.0	91.4	At3g04200	819575	germin-like protein, putative	F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFO	O.I.	C.G.	H.G.
450.8	100.0	110.5	At5g51490	835223	pectinesterase family protein	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFOM	O.I.	C.G.	H.G.
390.3	100.0	63.4	At5g07500	830642	PEI1	Encodes an embryo-specific zinc finger transcription factor required for heart-stage embryo formation.	O.I.	C.G.	H.G.
361.8	100.0	73.3	At3g04180	819573	germin-like protein, putative	F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOBA	O.I.	C.G.	H.G.
335.8	100.0	181.8	At1g18100	838390	E12A11	E12A11 protein (E12A11)	O.I.	C.G.	H.G.
324.0	100.0	76.6	At4g25980	828704	cationic peroxidase, putative	F:peroxidase activity;P:response to oxidative stress;C:endomembrane system;PFOM	O.I.	C.G.	H.G.
291.3	100.0	467.6	At2g34700	818035	pollen Ole e 1 allergen and extensin family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
268.3	100.0	203.6	At4g34520	829603	KCS18	Encodes KCS18, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).	O.I.	C.G.	H.G.
254.0	100.0	547.0	At5g51210	835196	OLEO3 (OLEOSIN3)	Encodes oleosin3, a protein found in oil bodies, involved in seed lipid accumulation.	O.I.	C.G.	H.G.
249.4	100.0	403.1	At3g63040	825479	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
247.3	100.0	65.1	At5g44360	834462	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAM	O.I.	C.G.	H.G.
243.6	100.0	99.9	At5g23190	832383	CYP86B1	cytochrome P450 CYP86B1, nuclear gene for chloroplast product	O.I.	C.G.	H.G.
239.6	100.0	96.8	At2g25940	817135	ALPHA-VPE (alpha-vacuolar processing enzyme)	Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteinases that is expressed in vegetative organs and is upregulated in association with various types of cell death and under stressed conditions.	O.I.	C.G.	H.G.
227.6	100.0	422.7	At1g17810	838359	BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN)	beta-tonoplast intrinsic protein (beta-TIP) mRNA, complete	O.I.	C.G.	H.G.
227.2	100.0	473.1	At5g07190	830610	ATS3 (ARABIDOPSIS THALIANA SEED GENE 3)	Gene is expressed preferentially in the embryo and encodes a unique protein of unknown function.	O.I.	C.G.	H.G.
226.0	100.0	99.2	At5g09640	830823	SCPL19	encodes a serine carboxypeptidase-like (SCPL) protein. Mutants accumulate sinapoylglucose instead of sinapoylcholine, and have increased levels of choline and decreased activity of the enzyme sinapoylglucose:choline sinapoyltransferase.	O.I.	C.G.	H.G.
222.1	100.0	375.7	At4g26740	828781	ATS1 (ARABIDOPSIS THALIANA SEED GENE 1)	Gene is expressed preferentially in the embryo, has similarity to a rice ABA-responsive gene, EFA27.	O.I.	C.G.	H.G.
218.7	100.0	91.6	At3g58740	825043	CSY1 (CITRATE SYNTHASE 1)	Encodes a peroxisomal citrate synthase that is expressed in siliques and developing seeds.	O.I.	C.G.	H.G.
216.3	100.0	678.0	At3g01570	821106	glycine-rich protein / oleosin	F:molecular_function unknown;P:lipid storage;C:monolayer-surrounded lipid storage body, integral to membrane, membrane;P	O.I.	C.G.	H.G.
215.1	100.0	189.3	At5g07200	830611	YAP169	encodes a gibberellin 20-oxidase.	O.I.	C.G.	H.G.
206.7	100.0	486.3	At1g03890	839379	cupin family protein	F:nutrient reservoir activity;P:biological_process unknown;C:endomembrane system;PBMO	O.I.	C.G.	H.G.
203.9	100.0	57.5	At1g78500	844186	pentacyclic triterpene synthase, putative	Encodes a protein with pentacyclic triterpene synthase activity. In addition to the compounds lupeol, α-amyrin and bauerenol, this enzyme was also shown to produce two seco-triterpenes: α- and β-seco-amyrin.	O.I.	C.G.	H.G.
201.1	100.0	167.6	At4g32290	829363	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB	O.I.	C.G.	H.G.
199.9	100.0	214.3	At5g49190	834978	SUS2 (SUCROSE SYNTHASE 2)	Encodes a putative sucrose synthase (SUS2). The activity of the enzyme could not be assayed as proved to be insoluble (PMID 17257168). Induced specifically by O(2) deficiency.	O.I.	C.G.	H.G.
198.9	100.0	44.4	At3g04150	819570	germin-like protein, putative	F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFO	O.I.	C.G.	H.G.
192.5	100.0	75.0	At3g25160	822107	ER lumen protein retaining receptor family protein	F:ER retention sequence binding, receptor activity;P:protein retention in ER lumen, protein transport;C:integral to membrane;MOPF	O.I.	C.G.	H.G.
187.6	100.0	73.7	At1g68380	843167	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
176.0	100.0	434.7	At3g62730	825448	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PB	O.I.	C.G.	H.G.
174.8	100.0	425.0	At1g54860	841925	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
171.6	100.0	610.1	At3g27660	822388	OLEO4 (OLEOSIN 4)	Encodes oleosin4 (Plant Cell, 2006, 18:1961), a protein found in oil bodies, involved in seed lipid accumulation. Functions in freezing tolerance of seeds. Note: also referred to as OLE3 in Plant Journal 2008, 55:798.	O.I.	C.G.	H.G.
168.9	100.0	71.2	At1g01250	839322	AP2 domain-containing transcription factor, putative	encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.	O.I.	C.G.	H.G.
168.9	100.0	39.8	At3g11180	820289	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity, iron ion binding;P:unknown;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
168.6	100.0	56.6	At5g64190	836540	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
168.2	100.0	163.1	At3g18570	821388	glycine-rich protein / oleosin	F:molecular_function unknown;P:lipid storage;C:monolayer-surrounded lipid storage body, integral to membrane, membrane;P	O.I.	C.G.	H.G.
166.8	100.0	441.0	At1g62290	842526	aspartyl protease family protein	F:aspartic-type endopeptidase activity;P:proteolysis, lipid metabolic process;C:vacuole;MFOPB	O.I.	C.G.	H.G.
165.7	100.0	338.1	At4g36700	829823	cupin family protein	F:nutrient reservoir activity;P:biological_process unknown;C:endomembrane system;MOFBPVA	O.I.	C.G.	H.G.
165.7	100.0	93.9	At1g10970	837640	ZIP4 (ZINC TRANSPORTER 4 PRECURSOR)	A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root and shoot. Expression is regulated by copper, but response to copper deficiency is detected only after three weeks of deficiency.	O.I.	C.G.	H.G.
164.6	100.0	111.2	At3g12203	820399	scpl17 (serine carboxypeptidase-like 17)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB	O.I.	C.G.	H.G.
163.6	99.9	631.6	At1g62000	842495	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOF	O.I.	C.G.	H.G.
162.9	99.9	930.9	At1g03880	839383	CRU2 (CRUCIFERIN 2)	Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.	O.I.	C.G.	H.G.
161.2	99.9	667.8	At4g25140	828617	OLEO1 (OLEOSIN 1)	Encodes oleosin1, a protein found in oil bodies, involved in seed lipid accumulation. Suppression of OLEO1 (and OLEO2) resulted in an aberrant phenotype of embryo cells that contain unusually large oilbodies that are not normally observed in seeds. Changes in the size of oilbodies caused disruption of storage organelles, altering accumulation of lipids and proteins and causing delay in germination. Functions in freezing tolerance of seeds.	O.I.	C.G.	H.G.
156.1	99.9	540.7	At5g59170	836035	proline-rich family protein	F:unknown;P:unknown;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
153.5	99.9	95.2	At3g60730	825244	pectinesterase family protein	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM	O.I.	C.G.	H.G.
147.5	99.9	306.6	At1g12010	837753	1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative	encodes a protein whose sequence is similar to 1-amino-cyclopropane-1-carboxylic acid oxidase	O.I.	C.G.	H.G.
145.8	99.9	122.8	At3g53510	824519	ABC transporter family protein	F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMAFPV	O.I.	C.G.	H.G.
142.5	99.9	753.3	At4g27170	828825	2S seed storage protein 4 / 2S albumin storage protein / NWMU2-2S albumin 4	F:lipid binding, nutrient reservoir activity;P:lipid transport;C:endomembrane system;PO	O.I.	C.G.	H.G.
140.6	99.9	37.6	At3g04370	819592	PDLP4 (PLASMODESMATA-LOCATED PROTEIN 4)	Encodes a plasmodesmal protein that may be involved in the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain.	O.I.	C.G.	H.G.
140.6	99.9	26.2	At1g73290	843663	scpl5 (serine carboxypeptidase-like 5)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO	O.I.	C.G.	H.G.
139.2	99.9	28.6	At1g65880	842900	BZO1 (BENZOYLOXYGLUCOSINOLATE 1)	Encodes a benzoate-CoA ligase. Involved in the biosynthesis of benzoyloxyglucosinolate in Arabidopsis seeds.	O.I.	C.G.	H.G.
138.7	99.9	270.1	At5g09480	830807	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBMFPVA	O.I.	C.G.	H.G.
137.9	99.9	625.6	At4g27140	828822	2S seed storage protein 1 / 2S albumin storage protein / NWMU1-2S albumin 1	F:lipid binding, nutrient reservoir activity;P:lipid transport;C:endomembrane system;PMO	O.I.	C.G.	H.G.
131.8	99.9	55.3	At5g47635	834814	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
127.5	99.9	133.5	At5g55240	835617	caleosin-related family protein / embryo-specific protein, putative	F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
126.6	99.9	122.0	At1g68850	843218	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM	O.I.	C.G.	H.G.
124.8	99.9	141.3	At5g50260	835091	cysteine proteinase, putative	F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF	O.I.	C.G.	H.G.
123.8	99.9	92.7	At2g23640	816896	reticulon family protein (RTNLB13)	F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MPO	O.I.	C.G.	H.G.
123.5	99.9	107.5	At1g11170	837658	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB	O.I.	C.G.	H.G.
123.4	99.9	171.6	At1g56170	842070	NF-YC2 (NUCLEAR FACTOR Y, SUBUNIT C2)	Encodes a protein with similarity to a subunit of the CCAAT promoter motif binding complex of yeast.One of two members of this class (HAP5B) and expressed in vegetative and reproductive tissues	O.I.	C.G.	H.G.
123.0	99.9	22.1	At1g25410	839127	ATIPT6	AB061404 Arabidopsis thaliana AtIPT6 mRNA for cytokinin synthase, complete cds	O.I.	C.G.	H.G.
121.7	99.9	79.4	At5g47670	834818	NF-YB6 (NUCLEAR FACTOR Y, SUBUNIT B6)	F:transcription activator binding, transcription factor activity, transcription activator activity;P:positive regulation of gene-specific transcription, regulation of transcription;C:nucleus, intracellular;MPFOA	O.I.	C.G.	H.G.
120.1	99.9	419.1	At1g14950	838060	major latex protein-related / MLP-related	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
116.9	99.9	231.7	At1g70670	843404	caleosin-related family protein	F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
116.8	99.9	75.5	At2g40370	818630	LAC5 (laccase 5)	putative laccase, a member of laccase family of genes (17 members in Arabidopsis).	O.I.	C.G.	H.G.
115.3	99.9	469.7	At2g28490	817397	cupin family protein	F:nutrient reservoir activity;P:biological_process unknown;C:endomembrane system;BMPOFVA	O.I.	C.G.	H.G.
114.6	99.9	405.3	At4g27150	828823	2S seed storage protein 2 / 2S albumin storage protein / NWMU2-2S albumin 2	F:lipid binding, nutrient reservoir activity;P:lipid transport;C:endomembrane system;PO	O.I.	C.G.	H.G.
109.8	99.9	249.8	At2g15010	815990	thionin, putative	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.	O.I.	C.G.	H.G.
104.5	99.9	520.6	At5g40420	834040	OLEO2 (OLEOSIN 2)	Encodes oleosin2, a protein found in oil bodies, involved in seed lipid accumulation. Suppression of OLEO1 (and OLEO2) resulted in an aberrant phenotype of embryo cells that contain unusually large oilbodies that are not normally observed in seeds. Changes in the size of oilbodies caused disruption of storage organelles, altering accumulation of lipids and proteins and causing delay in germination. Functions in freezing tolerance of seeds.	O.I.	C.G.	H.G.
103.8	99.9	210.6	At5g60460	836167	sec61beta family protein	F:protein transporter activity;P:protein transport;C:plasma membrane;MFPOB	O.I.	C.G.	H.G.
103.6	99.9	95.9	At5g62800	836401	seven in absentia (SINA) family protein	F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process;C:nucleus;MPOF	O.I.	C.G.	H.G.
102.2	99.9	260.8	At5g45690	834608	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPF	O.I.	C.G.	H.G.
99.0	99.9	758.5	At4g28520	828970	CRU3 (CRUCIFERIN 3)	Encodes a 12S seed storage protein that is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.	O.I.	C.G.	H.G.
98.4	99.9	688.6	At5g44120	834435	CRA1 (CRUCIFERINA)	Encodes a 12S seed storage protein. The Landsberg erecta genome contains another copy of 12S globulin gene, CRA2, which is located tandemly with CRA1. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.	O.I.	C.G.	H.G.
95.5	99.9	399.3	At1g73190	843653	TIP3	Moves to the Protein Storage Vacuole in a Golgi independent manner	O.I.	C.G.	H.G.
94.5	99.9	317.6	At1g05510	837053	-	Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.	O.I.	C.G.	H.G.
92.1	99.9	483.6	At4g27160	828824	AT2S3	F:lipid binding, nutrient reservoir activity;P:lipid transport;C:endomembrane system;PO	O.I.	C.G.	H.G.
92.0	99.9	489.9	At1g04560	839491	AWPM-19-like membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
90.0	99.9	450.9	At3g15670	820810	late embryogenesis abundant protein, putative / LEA protein, putative	F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:nucleus;BOMPFVA	O.I.	C.G.	H.G.
89.4	99.9	21.5	At3g44460	823571	DPBF2	basic leucine zipper transcription factor (BZIP67), identical to basic leucine zipper transcription factor GI:18656053 from (Arabidopsis thaliana); identical to cDNA basic leucine zipper transcription factor (atbzip67 gene) GI:18656052. Located in the nucleus and expressed during seed maturation in the cotyledons.	O.I.	C.G.	H.G.
88.8	99.9	449.5	At3g22640	821835	PAP85	F:nutrient reservoir activity;P:biological_process unknown;C:plant-type cell wall;POM	O.I.	C.G.	H.G.
88.7	99.9	155.7	At1g62070	842503	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBF	O.I.	C.G.	H.G.
87.9	99.9	351.3	At5g50600	835129	AtHSD1 (hydroxysteroid dehydrogenase 1)	F:oxidoreductase activity, binding, catalytic activity;P:response to brassinosteroid stimulus, response to abscisic acid stimulus;C:endomembrane system;BOMFPAV	O.I.	C.G.	H.G.
87.7	99.9	138.3	At2g34870	818052	MEE26 (maternal effect embryo arrest 26)	F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:endomembrane system;MPOVFBA	O.I.	C.G.	H.G.
86.3	99.9	133.7	At1g52880	841721	NAM (NO APICAL MERISTEM)	Transcription factor with a NAC domain. Homologous to the petunia gene NAM which is required for the development of the shoot. Expressed in the embryo.	O.I.	C.G.	H.G.
85.7	99.9	155.3	At5g48100	834862	TT10 (TRANSPARENT TESTA 10)	Encodes a protein that is similar to laccase-like polyphenol oxidases. Involved in lignin and flavonoids biosynthesis. It has four conserved copper binding domains. Expressed in developing testa, where it colocalizes with the flavonoid end products proanthocyanidins and flavonols. Mutant plants exhibited a delay in developmentally determined browning of the testa, characterized by the pale brown color of seed coat. The tt10 mutant seeds accumulate more epicatechin monomers and more soluble proanthocyanidins than wild-type seeds. Flavonol composition was also affected in tt10 seeds, which exhibited a higher ratio of quercetin rhamnoside monomers versus dimers than wild-type seeds.	O.I.	C.G.	H.G.
84.7	99.9	30.2	At2g47750	819387	GH3.9 (PUTATIVE INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE GH3.9)	F:molecular_function unknown;P:response to auxin stimulus;C:chloroplast envelope;POBMF	O.I.	C.G.	H.G.
81.9	99.9	84.3	At1g29680	839845	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPF	O.I.	C.G.	H.G.
81.8	99.9	102.0	At5g15740	831430	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
79.6	99.9	280.6	At1g54870	841926	binding / catalytic/ oxidoreductase	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:chloroplast;BOMFPAV	O.I.	C.G.	H.G.
78.8	99.9	118.3	At5g44550	834482	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
78.8	99.9	49.1	At1g04380	839535	2-oxoglutarate-dependent dioxygenase, putative	encodes a protein similar to a 2-oxoglutarate-dependent dioxygenase	O.I.	C.G.	H.G.
78.7	99.9	50.2	At3g25260	822120	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:membrane;BPMOF	O.I.	C.G.	H.G.
78.2	99.9	90.5	At1g09380	837460	integral membrane family protein / nodulin MtN21-related	F:unknown;P:unknown;C:endomembrane system, membrane;BOPAMF	O.I.	C.G.	H.G.
77.4	99.9	114.3	At1g48470	841268	GLN1	Encodes cytosolic glutamine synthase isozyme. Expression of mRNA is not detectable in roots.	O.I.	C.G.	H.G.
76.6	99.9	188.5	At5g13170	831156	SAG29 (SENESCENCE-ASSOCIATED PROTEIN 29)	F:unknown;P:unknown;C:endomembrane system, integral to membrane, membrane;PMOB	O.I.	C.G.	H.G.
74.7	99.9	41.5	At4g16620	827363	integral membrane family protein / nodulin MtN21-related	F:molecular_function unknown;P:unknown;C:membrane;PBOFAM	O.I.	C.G.	H.G.
74.4	99.9	22.4	At1g53270	841761	ABC transporter family protein	F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPV	O.I.	C.G.	H.G.

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GSM ID	-
Assay name	E-ATMX-1-raw-cel-1112746095
GSE experiment	-

Microarray experiments to specifically-expressed genes

GSM ID - Assay name E-ATMX-1-raw-cel-1112746095 GSE experiment -

GSM ID -

Assay name E-ATMX-1-raw-cel-1112746095

GSE experiment -