Metabolic pathway to genes

Genes assigned in the pathway

Query pathway ID 00067
Pathway name tRNA-charging-pathway
Organism Arabidopsis_thaliana
Database KaPPA-View 4

Click Gene ID to show a list of co-expressed genes.

Gene ID Repr. ID Gene name Functional description O.I. H.G. Other DB
At1g09620837489ATP binding / aminoacyl-tRNA ligase/ leucine-tRNA ligase/ nucleotide bindingF:nucleotide binding, aminoacyl-tRNA ligase activity, leucine-tRNA ligase activity, ATP binding;P:leucyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:chloroplast;BOMAFPO.I.H.G.
At1g11870837734SRS (SERYL-TRNA SYNTHETASE)Seryl-tRNA synthetase targeted to chloroplasts and mitochondria. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana.O.I.H.G.
At1g14610838023TWN2 (TWIN 2)Required for proper proliferation of basal cells.O.I.H.G.
At1g17960838375threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putativeF:nucleotide binding, aminoacyl-tRNA ligase activity, threonine-tRNA ligase activity, ATP binding;P:threonyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:cytoplasm;BOMFAPO.I.H.G.
At1g25350839120OVA9 (ovule abortion 9)F:glutamine-tRNA ligase activity;P:glutamyl-tRNA aminoacylation, translation, ovule development;C:cytosol;BOMFAPO.I.H.G.
At1g27160839605valyl-tRNA synthetase / valine--tRNA ligase-relatedF:valine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding;P:translation, valyl-tRNA aminoacylation, tRNA aminoacylation for protein translation;C:cytoplasm;BOMFAPO.I.H.G.
At1g50200841442ALATS (ALANYL-TRNA SYNTHETASE)F:alanine-tRNA ligase activity, ligase activity, forming aminoacyl-tRNA and related compounds, nucleotide binding, nucleic acid binding, ATP binding;P:alanyl-tRNA aminoacylation, response to cadmium ion;C:mitochondrion, chloroplast;OBMAFPO.I.H.G.
At1g66530842971arginyl-tRNA synthetase, putative / arginine--tRNA ligase, putativeF:aminoacyl-tRNA ligase activity, nucleotide binding, arginine-tRNA ligase activity, ATP binding;P:arginyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:cytoplasm;OBMAFPVO.I.H.G.
At1g68420843171asparaginyl-tRNA synthetase-relatedF:nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding;P:translation, tRNA aminoacylation for protein translation;C:cytoplasm;BOMFAPO.I.H.G.
At1g70980843436SYNC3F:in 6 functions;P:asparaginyl-tRNA aminoacylation, aspartyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:cytoplasm;BOMFAPO.I.H.G.
At1g72550843587tRNA synthetase beta subunit family proteinF:phenylalanine-tRNA ligase activity, RNA binding, magnesium ion binding, nucleotide binding, ATP binding;P:phenylalanyl-tRNA aminoacylation, translation;C:phenylalanine-tRNA ligase complex, cytoplasm;BOMAFPO.I.H.G.
At2g25840817126OVA4 (ovule abortion 4)F:nucleotide binding, aminoacyl-tRNA ligase activity, tryptophan-tRNA ligase activity, ATP binding;P:N-terminal protein myristoylation, ovule development, tRNA aminoacylation for protein translation;C:mitochondrion, chloroplast;OBMFAPO.I.H.G.
At2g29870817537major intrinsic family protein / MIP family proteinF:water channel activity;P:transport;C:membrane;BPMOFAO.I.H.G.
At2g29880817538unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFOMO.I.H.G.
At2g33840817952tRNA synthetase class I (W and Y) family proteinF:tyrosine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding;P:translation, tRNA aminoacylation for protein translation, tyrosyl-tRNA aminoacylation;C:cytoplasm;BOMAFPVO.I.H.G.
At2g40660818661tRNA-binding region domain-containing proteinF:tRNA binding;P:tRNA aminoacylation for protein translation;C:unknown;BOMAFPVO.I.H.G.
At3g02660821282emb2768 (EMBRYO DEFECTIVE 2768)F:RNA binding, tyrosine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:embryonic development ending in seed dormancy, tRNA aminoacylation for protein translation;C:mitochondrion, chloroplast;OBFMPAO.I.H.G.
At3g02760820930ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide bindingF:histidine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:histidyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:chloroplast, cytoplasm;OBMFAPO.I.H.G.
At3g04600819617tRNA synthetase class I (W and Y) family proteinF:tryptophan-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding;P:tryptophanyl-tRNA aminoacylation, tRNA aminoacylation for protein translation;C:cytosol;BOAMFPVO.I.H.G.
At3g07420819930NS2Encodes an asparaginyl-tRNA synthetase.O.I.H.G.
At3g11710820343ATKRS-1 (ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 1)F:nucleotide binding, aminoacyl-tRNA ligase activity, lysine-tRNA ligase activity, ATP binding, nucleic acid binding;P:lysyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:cytoplasm;BOMFAPO.I.H.G.
At3g13490820551OVA5 (OVULE ABORTION 5)Encodes a dual targeted lysyl-tRNA ligase that is found both in the mitochondrion and the chloroplast. Plants mutated in this gene exhibit an ovule abortion phenotype.O.I.H.G.
At3g44740823604ATP binding / aminoacyl-tRNA ligase/ glycine-tRNA ligase/ nucleotide bindingF:glycine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding;P:translation, tRNA aminoacylation for protein translation, glycyl-tRNA aminoacylation;C:endomembrane system, cytoplasm;OBMAFPO.I.H.G.
At3g46100823753ATHRS1 (HISTIDYL-TRNA SYNTHETASE 1)histidyl-tRNA synthetaseO.I.H.G.
At3g48110823966EDD1 (EMBRYO-DEFECTIVE-DEVELOPMENT 1)glycine-tRNA ligaseO.I.H.G.
At3g55400824706OVA1 (OVULE ABORTION 1)F:methionine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:ovule development, tRNA aminoacylation for protein translation;C:mitochondrion, chloroplast;BOAFMPVO.I.H.G.
At3g56300824797tRNA synthetase class I (C) family proteinF:cysteine-tRNA ligase activity, nucleotide binding, ATP binding;P:cysteinyl-tRNA aminoacylation, translation;C:cytoplasm;OBMFAPVO.I.H.G.
At3g58140824983phenylalanyl-tRNA synthetase class IIc family proteinF:in 6 functions;P:tRNA processing, phenylalanyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:mitochondrion, chloroplast, membrane;BOMFAPO.I.H.G.
At3g62120825385tRNA synthetase class II (G, H, P and S) family proteinF:proline-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:prolyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:membrane;BOMAFPO.I.H.G.
At4g04350825755EMB2369 (EMBRYO DEFECTIVE 2369)F:aminoacyl-tRNA ligase activity, nucleotide binding, leucine-tRNA ligase activity, ATP binding;P:embryonic development ending in seed dormancy, tRNA aminoacylation for protein translation;C:mitochondrion, chloroplast;OBAMFPVO.I.H.G.
At4g10320826624isoleucyl-tRNA synthetase, putative / isoleucine--tRNA ligase, putativeF:isoleucine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding;P:response to cadmium ion, tRNA aminoacylation for protein translation;C:cytosol;OBAMFPO.I.H.G.
At4g13780827012methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putativeF:methionine-tRNA ligase activity, tRNA binding, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:response to cadmium ion, methionyl-tRNA aminoacylation;C:cytosol;OBMFAPVO.I.H.G.
At4g17300827443NS1Asparaginyl-tRNA synthetase protein involved in amino acid activation/protein synthesis.O.I.H.G.
At4g26300828736emb1027 (embryo defective 1027)F:nucleotide binding, aminoacyl-tRNA ligase activity, arginine-tRNA ligase activity, ATP binding;P:embryonic development ending in seed dormancy, arginyl-tRNA aminoacylation;C:mitochondrion, chloroplast;OBMAFPVO.I.H.G.
At4g26870828794aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putativeF:aspartate-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, nucleic acid binding, ATP binding;P:response to cadmium ion, tRNA aminoacylation for protein translation;C:cytoplasm;BOMFAPO.I.H.G.
At4g31180829246aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putativeF:aspartate-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, nucleic acid binding, ATP binding;P:response to cadmium ion, aspartyl-tRNA aminoacylation;C:chloroplast, cytoplasm;BOMFAPO.I.H.G.
At4g33760829518tRNA synthetase class II (D, K and N) family proteinF:aspartate-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, nucleic acid binding, ATP binding;P:aspartyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:mitochondrion, chloroplast, membrane, cytoplasm;BOMFAPO.I.H.G.
At4g39280830084phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putativeF:phenylalanine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:phenylalanyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:cytoplasm;BOMAFPO.I.H.G.
At5g03410O.I.H.G.
At5g16710831532DHAR3 (dehydroascorbate reductase 1)The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide.O.I.H.G.
At5g19720832092tRNA synthetase class I (E and Q) family proteinF:glutamine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:glutaminyl-tRNA aminoacylation, glutamyl-tRNA aminoacylation, translation;C:cytoplasm;BOMFPO.I.H.G.
At5g26710832718glutamate-tRNA ligase, putative / glutamyl-tRNA synthetase, putatuve / GluRS, putativeF:glutamate-tRNA ligase activity;P:glutamyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:cytoplasm;BOMFAPO.I.H.G.
At5g26830832741threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS)Encodes a dual-targeted threonyl-tRNA synthetase found in both the chloroplast and mitochondrion.O.I.H.G.
At5g27470832806seryl-tRNA synthetase / serine--tRNA ligaseF:serine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:response to cadmium ion, seryl-tRNA aminoacylation;C:cytosol;OBMFAPO.I.H.G.
At5g38750833866asparaginyl-tRNA synthetase familyF:asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity;P:N-terminal protein myristoylation, tRNA aminoacylation for protein translation;C:unknown;BPOMO.I.H.G.
At5g38830833874tRNA synthetase class I (C) family proteinF:cysteine-tRNA ligase activity, nucleotide binding, ATP binding;P:response to cadmium ion, cysteinyl-tRNA aminoacylation;C:cytoplasm;OBMFAPVO.I.H.G.
At5g49030834962OVA2 (ovule abortion 2)F:nucleotide binding, isoleucine-tRNA ligase activity, aminoacyl-tRNA ligase activity, catalytic activity, ATP binding;P:ovule development, tRNA aminoacylation for protein translation;C:chloroplast;OBMAFPO.I.H.G.
At5g52520835328OVA6 (OVULE ABORTION 6)F:proline-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:regulation of photosynthesis, seed development, embryo sac development, ovule development, tRNA aminoacylation for protein translation;C:mitochondrion, chloroplast, chloroplast stroma;BOAMFPO.I.H.G.
At5g56680835769SYNC1Encodes a putative cytosolic asparaginyl-tRNA synthetase.O.I.H.G.
At5g64050836526ERS (GLUTAMATE TRNA SYNTHETASE)Glutamate-tRNA ligase. Targeted to mitochondria and chloroplast. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana.O.I.H.G.

Comparison with co-expressed genes



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