Metabolic pathway to genes

Genes assigned in the pathway

Query pathway ID 04130
Pathway name SNARE interactions in vesicular transport
Organism Arabidopsis_thaliana

Click Gene ID to show a list of co-expressed genes.

Gene ID Repr. ID Gene name Functional description O.I. H.G. Other DB
At1g08560837378SYP111 (SYNTAXIN OF PLANTS 111)member of SYP11 Gene FamilyO.I.H.G.
At1g11250837666SYP125 (SYNTAXIN OF PLANTS 125)member of SYP12 Gene FamilyO.I.H.G.
At1g11890837737SEC22member of SEC22 Gene FamilyO.I.H.G.
At1g13890837948SNAP30 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30)Encodes a member of a gene family homologous to mammalian SNAP25, a type of SNARE proteins with two chains. There are three members in Arabidopsis: SNAP30, SNAP29, and SNAP33.O.I.H.G.
At1g15880838158GOS11 (golgi snare 11)Golgi SNARE 11 protein (GOS11)O.I.H.G.
At1g16230838192syntaxin-related family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMOBO.I.H.G.
At1g16240838193SYP51 (SYNTAXIN OF PLANTS 51)Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed.O.I.H.G.
At1g26670839208VTI1Bmember of VTI1 Gene Family. Normally localizes to the transgolgi network and plasma membrane. A dominant mutation (zip1) alters the subcellular localization of VTI12 and suppresses loss of function mutation (zag1) of VTI11. Interacts with members of the SYP family. Involved in protein trafficking to protein storage vacuoles.O.I.H.G.
At1g29060839780-F:molecular_function unknown;P:biological_process unknown;C:unknown;PMFOO.I.H.G.
At1g32270840119ATSYP24member of SYP2 Gene FamilyO.I.H.G.
At1g51740841599SYP81 (SYNTAXIN OF PLANTS 81)member of SYP8 Gene FamilyO.I.H.G.
At1g61290842423SYP124 (SYNTAXIN OF PLANTS 124)member of SYP12 Gene FamilyO.I.H.G.
At1g79590844297SYP52 (SYNTAXIN OF PLANTS 52)Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed.O.I.H.G.
At2g18260816342SYP112 (SYNTAXIN OF PLANTS 112)member of SYP11 Gene FamilyO.I.H.G.
At2g25340817072ATVAMP712 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 712)Member of Synaptobrevin-like AtVAMP7C, v-SNARE protein family.O.I.H.G.
At2g36900818264MEMB11 (MEMBRIN 11)member of Membrin Gene FamilyO.I.H.G.
At2g45200819128GOS12 (GOLGI SNARE 12)Encodes a member of the GOS1 (Golgi SNARE) gene family.O.I.H.G.
At3g03800821141SYP131 (SYNTAXIN OF PLANTS 131)member of SYP13 Gene FamilyO.I.H.G.
At3g05710819740SYP43 (SYNTAXIN OF PLANTS 43)member of SYP4 Gene FamilyO.I.H.G.
At3g09740820132SYP71 (SYNTAXIN OF PLANTS 71)syntaxin of plants 71 (SYP71)O.I.H.G.
At3g11820820355SYP121 (SYNTAXIN OF PLANTS 121)Encodes a syntaxin localized at the plasma membrane (SYR1, Syntaxin Related Protein 1, also known as SYP121, PENETRATION1/PEN1). SYR1/PEN1 is a member of the SNARE superfamily proteins. SNARE proteins are involved in cell signaling, vesicle traffic, growth and development. SYR1/PEN1 functions in positioning anchoring of the KAT1 K+ channel protein at the plasma membrane. Transcription is upregulated by abscisic acid, suggesting a role in ABA signaling. Also functions in non-host resistance against barley powdery mildew, Blumeria graminis sp. hordei. SYR1/PEN1 is a nonessential component of the preinvasive resistance against Colletotrichum fungus. Required for mlo resistance.O.I.H.G.
At3g24315822020AtSec20F:molecular_function unknown;P:unknown;C:unknown;MFPOO.I.H.G.
At3g24350822024SYP32 (SYNTAXIN OF PLANTS 32)member of Glycoside Hydrolase Family 17O.I.H.G.
At3g29100822557VTI13Encodes a member of the Arabidopsis v-SNARE (vesicle soluble NSF attachment protein receptor) family that has 3 members: VTI11, VTI12, and VTI13. This gene is not expressed at levels detectable by RT-PCR. However, one EST corresponding to this gene has been isolated.O.I.H.G.
At3g45280823666SYP72 (SYNTAXIN OF PLANTS 72)syntaxin of plants 72 (SYP72)O.I.H.G.
At3g52400824405SYP122 (SYNTAXIN OF PLANTS 122)syntaxin protein, involved in the negative regulation of defense pathways such as programmed cell death, salicylic acid signalling pathway, jasmonic acid signalling pathwayO.I.H.G.
At3g58170824986BS14A (BET1P/SFT1P-LIKE PROTEIN 14A)Encodes a Bet1/Sft1-like SNARE protein which fully suppresses the temperature-sensitive growth defect in sft1-1 yeast cells; however, it cannot support the deletion of the yeast BET1 gene (bet1Δ).O.I.H.G.
At3g61450825318SYP73 (SYNTAXIN OF PLANTS 73)syntaxin of plants 73 (SYP73)O.I.H.G.
At4g02195827505SYP42 (SYNTAXIN OF PLANTS 42)member of SYP4 Gene FamilyO.I.H.G.
At4g03330827970SYP123 (SYNTAXIN OF PLANTS 123)member of SYP12 Gene FamilyO.I.H.G.
At4g14455827091ATBET12Encodes a Bet1/Sft1-like SNARE protein, which can only partially suppresses the temperature-sensitive growth defect in sft1-1 yeast cells; however, it cannot support the deletion of the yeast BET1 gene (bet1Δ). In yeast, Bet1p is the v-SNARE (soluble N-ethylmaleimide-sensitive factor adaptor protein receptor, V-type) involved in trafficking between the ER and Golgi.O.I.H.G.
At4g14600827108-F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PMFOO.I.H.G.
At4g17730827494SYP23 (SYNTAXIN OF PLANTS 23)member of SYP2 Gene FamilyO.I.H.G.
At4g32150829347ATVAMP711 (ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 711)AtVAMP711 is a member of Synaptobrevin-like AtVAMP7C, v-SNARE (soluble N-ethyl-maleimide sensitive factor attachment protein receptors) protein family. SNAREs have been divided into four subgroups: Qa-, Qb-, Qc- and R-SNAREs. R-SNAREs are classified into three groups, the Sec22-, YKT6- and VAMP7-like R-SNAREs. One R-SNARE and three Q-SNAREs (one of each subgroup) form the trans-SNARE complex, which governs specific membrane fusions. VAMP7 proteins consist of three distinct domain, the N-terminal longin-domain (LD), the SNARE motif (SNM) and a transmembrane domain. In spite of the high similarities among the VAMP7 proteins, they show different subcellular localizations. VAMP7C is vacuolar-localized and its LD is essential for the correct localization. Generally, it is suggested that the complete LD is the determinant of subcellular sorting in both animal and plant R-SNAREs.O.I.H.G.
At5g05760830461SYP31 (SYNTAXIN OF PLANTS 31)A SNARE protein (ortholog of syntaxin 5), a membrane fusion machine component involved in cytokinesisO.I.H.G.
At5g07880830681SNAP29member of mammalian SNAP25 Gene Family, a type of SNARE proteins with two chains. There are three members in Arabidopsis: SNAP30, SNAP29, and SNAP33.O.I.H.G.
At5g11150830984ATVAMP713 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 713)Member of Synaptobrevin-like AtVAMP7C, v-SNARE protein family.O.I.H.G.
At5g16830831546SYP21 (SYNTAXIN OF PLANTS 21)member of SYP2 Gene Family. Over-expression of the gene in tobacco protoplasts leads to a disruption of vacuolar transport from the prevacuolar compartment (PVC) to the vacuole, but not from the Golgi apparatus to the plasma membrane.O.I.H.G.
At5g22360832297ATVAMP714 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 714)Member of Synaptobrevin-like AtVAMP7C, v-SNARE protein family.O.I.H.G.
At5g26980832756SYP41 (SYNTAXIN OF PLANTS 41)member of SYP4 Gene FamilyO.I.H.G.
At5g39510833947SGR4 (SHOOT GRAVITROPSIM 4)Encodes a member of SNARE gene family. Homologous with yeast VTI1 and is involved in vesicle transport. Mutant alleles such as sgr4/zig are defective in the shoots response to gravity resulting in a zigzag growth pattern of the stem. Involved in protein trafficking to lytic vacuoles. Can conditionally substitute VTI12 in protein storage vacuole trafficking when plants are devoid of VTI12.O.I.H.G.
At5g39630833959vesicle transport v-SNARE family proteinF:SNARE binding, receptor activity;P:membrane fusion, intra-Golgi vesicle-mediated transport;C:membrane;OMFPBAVO.I.H.G.
At5g46860834730VAM3Syntaxin-related protein required for vacuolar assembly. A member of t-SNARE superfamily, homologous to yest Vam3p. Localized in the vacuolar membranes. The protein has a heptad repeat structure (residues164220) in which hydrophobic amino acid residues appear at seven amino acid intervals. Such regions have a high potential to form an amphiphilic a-helix, intriguing for the intermolecular interactions by forming coiled-coil structure. AtVam3p has a highly hydrophobic segment at its C terminus thus implicating it to be a membrane protein while the rest of the sequence is hydrophilic.O.I.H.G.
At5g50440835112MEMB12 (MEMBRIN 12)member of Membrin Gene FamilyO.I.H.G.
At5g52270835303vesicle transport protein-relatedF:molecular_function unknown;P:transport, vesicle-mediated transport;C:integral to membrane;MFPOO.I.H.G.
At5g58060835918YKT61member of YKT6 Gene FamilyO.I.H.G.
At5g58180835930ATYKT62member of YKT6 Gene FamilyO.I.H.G.
At5g61210836242SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33)membrane localized t-SNARE SNAP25 homologue, probably involved in cytokinesis and cell plate formationO.I.H.G.

Comparison with co-expressed genes

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