Metabolic pathway to genes

Genes assigned in the pathway

Query pathway ID 03022
Pathway name Basal transcription factors
Organism Arabidopsis_thaliana
Database KEGG PATHWAY

Click Gene ID to show a list of co-expressed genes.

Gene ID Repr. ID Gene name Functional description O.I. H.G. Other DB
At1g02680837962TAF13 (TBP-ASSOCIATED FACTOR 13)F:RNA polymerase II transcription factor activity, DNA binding;P:transcription initiation, transcription from RNA polymerase II promoter;C:transcription factor complex;FMPOVO.I.H.G.
At1g03280838581transcription initiation factor IIE (TFIIE) alpha subunit family protein / general transcription factor TFIIE family proteinF:RNA polymerase II transcription factor activity, transcription initiation factor activity;P:transcription initiation from RNA polymerase II promoter;C:endomembrane system, transcription factor TFIIE complex;MFOPVBAO.I.H.G.
At1g04950839370TAF6 (TBP-ASSOCIATED FACTOR 6)Encodes one of two Arabidopsis proteins with significant similarity to the histone fold TBP-associated factor TAF6. Mutants are embryo lethal and transmission of the mutant allele through the male gametophyte is significantly reduced. This is due to reduced pollen tube growth of the mutant.O.I.H.G.
At1g05055839332GTF2H2 (GENERAL TRANSCRIPTION FACTOR IIH 2)Member of transcription factor TFIIH complex. Involved in transcription and DNA repair and interacts with AtXPD.O.I.H.G.
At1g07470837259transcription factor IIA large subunit, putative / TFIIA large subunit, putativeF:RNA polymerase II transcription factor activity, transcription factor activity;P:transcription initiation from RNA polymerase II promoter, transcription;C:transcription factor TFIIA complex;MFPOBVO.I.H.G.
At1g18340838415basal transcription factor complex subunit-relatedF:general RNA polymerase II transcription factor activity;P:DNA repair, regulation of transcription, DNA-dependent;C:core TFIIH complex;MFOPO.I.H.G.
At1g20000838589TAF11b (TBP-ASSOCIATED FACTOR 11b)Encodes TAF11b, a putative TBP-associated factor (TBP: TATA binding protein).O.I.H.G.
At1g32750840169HAF01This gene is predicted to encode a histone acetyltransferase. Five lines with RNAi constructs directed against HAF1 grow normally and can produce root calli, but have defects in agrobacterium-mediated transformation.O.I.H.G.
At1g54140841854TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT)putative TATA binding protein associated factor 21kDaO.I.H.G.
At1g54360841877TAF6B4 (TBP-ASSOCIATED FACTOR 6B4)Encodes one of two Arabidopsis proteins with significant similarity to the histone fold TBP-associated factor TAF6.O.I.H.G.
At1g55300841975TAF7 (TBP-ASSOCIATED FACTOR 7)F:general RNA polymerase II transcription factor activity;P:transcription initiation from RNA polymerase II promoter;C:transcription factor TFIID complex;MFPOO.I.H.G.
At1g55520841999TBP2 (TATA BINDING PROTEIN 2)TATA-box binding protein. Required for basal transcription. Acts facilitating the recruitment of TFIID to the promoter, which together with the RNA polymerase form the preinitiation complex.O.I.H.G.
At1g55750842024transcription factor-relatedF:unknown;P:unknown;C:cellular_component unknown;MFPOO.I.H.G.
At1g73960843733TAF2 (TBP-ASSOCIATED FACTOR 2)F:metallopeptidase activity, zinc ion binding;P:unknown;C:cellular_component unknown;MOBFPAVO.I.H.G.
At1g75510843887transcription initiation factor IIF beta subunit (TFIIF-beta) family proteinF:RNA polymerase II transcription factor activity, general RNA polymerase II transcription factor activity, catalytic activity, ATP binding, ATP-dependent helicase activity;P:transcription initiation from RNA polymerase II promoter, transcription from RNA polymerase II promoter;C:transcription factor TFIIF complex, mitochondrion;MFPOO.I.H.G.
At2g41630818761TFIIB (TRANSCRIPTION FACTOR II B)Encodes the transcription factor TFIIB.O.I.H.G.
At3g10070820168TAF12 (TBP-ASSOCIATED FACTOR 12)Encodes one of two Arabidopsis proteins with similarity to the TBP-associated factor TAF12.O.I.H.G.
At3g10330820195transcription initiation factor IIB-2 / general transcription factor TFIIB-2 (TFIIB2)F:protein binding, RNA polymerase II transcription factor activity, transcription regulator activity, zinc ion binding, translation initiation factor activity;P:translational initiation, regulation of transcription, DNA-dependent, transcription initiation, regulation of transcription;C:nucleus, cytoplasm;OAMFPVO.I.H.G.
At3g13445820546TBP1 (TATA BINDING PROTEIN 1)TBP (TATA binding protein) associates with TAF(II)s (TBP-associated factors) to form the TFIID general transcription factor complexO.I.H.G.
At3g19040821437HAF2 (HISTONE ACETYLTRANSFERASE OF THE TAFII250 FAMILY 2)Encodes a protein similar to TATA-binding protein-associated factor TAF1 (a.k.a. TAFII250) with histone acetyltransferase activity. It is required in integrating light signals to regulate gene expression and growth.O.I.H.G.
At3g29380822598transcription factor IIB (TFIIB) family proteinF:protein binding, RNA polymerase II transcription factor activity, transcription regulator activity, zinc ion binding, translation initiation factor activity;P:response to cadmium ion;C:transcription factor complex, nucleus;OAMFPVO.I.H.G.
At3g52270824392ATP binding / RNA polymerase II transcription factorF:RNA polymerase II transcription factor activity, ATP binding;P:transcription initiation from RNA polymerase II promoter;C:transcription factor TFIIF complex;MFPOO.I.H.G.
At3g61420825315-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOAO.I.H.G.
At4g10680826661transcription factor IIB (TFIIB) family proteinF:protein binding, RNA polymerase II transcription factor activity, transcription regulator activity, zinc ion binding, translation initiation factor activity;P:translational initiation, regulation of transcription, DNA-dependent, transcription initiation, regulation of transcription;C:transcription factor complex, nucleus;AOMFPVO.I.H.G.
At4g12610826874transcription initiation factor IIF alpha subunit (TFIIF-alpha) family proteinF:RNA polymerase II transcription factor activity, transcription initiation factor activity, transcription activator activity, DNA binding, catalytic activity;P:transcription initiation from RNA polymerase II promoter, positive regulation of transcription;C:nucleus, chloroplast;MOFBPVAO.I.H.G.
At4g17020827410transcription factor-relatedF:RNA polymerase II transcription factor activity;P:DNA repair, regulation of transcription, DNA-dependent;C:endomembrane system, nucleus;MFOPO.I.H.G.
At4g20280827775TAF11 (TBP-ASSOCIATED FACTOR 11)Encodes TAF11, a putative TBP-associated factor (TBP: TATA binding protein).O.I.H.G.
At4g20330827781transcription initiation factor-relatedF:RNA polymerase II transcription factor activity;P:transcription initiation from RNA polymerase II promoter;C:transcription factor TFIIE complex;MFPOO.I.H.G.
At4g21010827848transcription initiation factor-relatedF:RNA polymerase II transcription factor activity;P:transcription initiation from RNA polymerase II promoter;C:transcription factor TFIIE complex;MFPOO.I.H.G.
At4g24440828546transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)F:RNA polymerase II transcription factor activity;P:transcription initiation from RNA polymerase II promoter;C:transcription factor TFIIA complex;MPFOO.I.H.G.
At4g31720829300TAFII15 (TBP-ASSOCIATED FACTOR II 15)Arabidopsis thaliana putative TBP-associated 15 kDa subunit protein (TAFII15)O.I.H.G.
At4g36650829817ATPBRP (PLANT-SPECIFIC TFIIB-RELATED PROTEIN)Encodes a protein with similarity to the general transcription factor TFIIB. pBRP binds rDNA sequences in vitro. pBRP has been localized to the outer face of the plastid membrane with GFP fusion however, under conditions of proteosome inhibition it is found in the nucleus.O.I.H.G.
At5g25150832586TAF5 (TBP-ASSOCIATED FACTOR 5)Encodes a putative TATA-binding-protein associated factor TAF5. TAFs are subunits of the general transcription factor IID (TFIID).O.I.H.G.

Comparison with co-expressed genes



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