Metabolic pathway to genes

Genes assigned in the pathway

Query pathway ID 01063
Pathway name Biosynthesis of alkaloids derived from shikimate pathway
Organism Arabidopsis_thaliana
Database KEGG PATHWAY

Click Gene ID to show a list of co-expressed genes.

Gene ID Repr. ID Gene name Functional description O.I. H.G. Other DB
At1g01090839429PDH-E1 ALPHA (PYRUVATE DEHYDROGENASE E1 ALPHA)pyruvate dehydrogenase E1 alpha subunitO.I.H.G.
At1g04410839527malate dehydrogenase, cytosolic, putativeF:in 6 functions;P:response to cadmium ion, response to salt stress;C:in 7 components;BOMPFAO.I.H.G.
At1g07780837292PAI1 (PHOSPHORIBOSYLANTHRANILATE ISOMERASE 1)Encodes phosphoribosylanthranilate isomerase which catalyzes the third step of the tryptophan biosynthetic pathway. Member of gene family.O.I.H.G.
At1g09430837466ACLA-3Encodes subunit A of the heteromeric enzyme ATP citrate lyase (ACL). In animals, ACL is encoded by a single gene; ACL in Arabidopsis is composed of two polypeptides, ACLA (encoded by 3 genes) and ACLB (encoded by 2 genes). The holoenzyme has an A(4)B(4)stoichiometry. Expression of both ACLA and ACLB but not of either of the subunits alone results in ACL activity.O.I.H.G.
At1g097808375072,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, putativeF:manganese ion binding, phosphoglycerate mutase activity, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity, catalytic activity, metal ion binding;P:response to cadmium ion, response to cold;C:cytosol, mitochondrial envelope, chloroplast, plasma membrane;BOPFAMO.I.H.G.
At1g10070837543ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2)Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.O.I.H.G.
At1g10670837610ACLA-1One of the three genes encoding subunit A of the trimeric protein ATP Citrate Lyase. Antisense ACLA-1 plants cause a reduction in cytosolic acetyl-CoA metabolism and have upregulation of stress-related genes and down-regulation of primary metabolism and growth genes, suggesting the mutation restricts normal growth and developmental processes and puts the plant into a state of stress.O.I.H.G.
At1g12230837776transaldolase, putativeF:transaldolase activity, catalytic activity;P:glucose catabolic process to lactate and acetate, 5-phosphoribose 1-diphosphate biosynthetic process, carbohydrate metabolic process, metabolic process, pentose-phosphate shunt, non-oxidative branch;C:chloroplast;BOFMPAVO.I.H.G.
At1g12900837848GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2)F:NAD or NADH binding, glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity, binding, glyceraldehyde-3-phosphate dehydrogenase activity, catalytic activity;P:glycolysis, glucose metabolic process, metabolic process;C:apoplast, chloroplast stroma, chloroplast, membrane, chloroplast envelope;BOPFMAO.I.H.G.
At1g13440837904GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2)F:NAD or NADH binding, glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity, binding, catalytic activity, glyceraldehyde-3-phosphate dehydrogenase activity;P:response to oxidative stress, response to cadmium ion, gluconeogenesis, defense response to bacterium, glycolysis;C:in 8 components;BOPFMAO.I.H.G.
At1g16300838199GAPCP-2F:NAD or NADH binding, glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity, binding, catalytic activity, glyceraldehyde-3-phosphate dehydrogenase activity;P:glycolysis, glucose metabolic process, metabolic process;C:plastid;BOPFMAO.I.H.G.
At1g204808386364-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family proteinF:4-coumarate-CoA ligase activity;P:phenylpropanoid metabolic process, metabolic process;C:cellular_component unknown;BOFMPAVO.I.H.G.
At1g224108388472-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putativeF:3-deoxy-7-phosphoheptulonate synthase activity;P:aromatic amino acid family biosynthetic process;C:membrane;OBPFO.I.H.G.
At1g24180839031IAR4Arabidopsis thaliana pyruvate dehydrogenase E1a-like subunit. 81% identical to a previously characterized Arabidopsis mitochondrial PDH E1a-subunit, At1g59900O.I.H.G.
At1g24807839085anthranilate synthase beta subunit, putativeF:catalytic activity, anthranilate synthase activity;P:glutamine metabolic process, biosynthetic process, metabolic process;C:chloroplast;BOFAMPO.I.H.G.
At1g24909839089anthranilate synthase beta subunit, putativeF:catalytic activity, anthranilate synthase activity;P:glutamine metabolic process, biosynthetic process, metabolic process;C:unknown;BOFAMPO.I.H.G.
At1g25220839103ASB1 (ANTHRANILATE SYNTHASE BETA SUBUNIT 1)Catalyzes the first step of tryptophan biosynthesis: Chorismate L-Glutamine = Anthranilate Pyruvate L-Glutamate. Functions as a heterocomplex with anthranilate synthase alpha subunit (ASA1 or ASA2).O.I.H.G.
At1g29410839817PAI3 (phosphoribosylanthranilate isomerase 3)Encodes phosphoribosylanthranilate isomerase which catalyzes the third step in tryptophan biosynthesis.O.I.H.G.
At1g30120839891PDH-E1 BETA (PYRUVATE DEHYDROGENASE E1 BETA)Encodes a putative plastid pyruvate dehydrogenase E1 beta subunit that is distinct from the mitochondrial pyruvate dehydrogenase E1 beta subunit.O.I.H.G.
At1g32440840138PKp3 (plastidial pyruvate kinase 3)encodes a chloroplast pyruvate kinase beta subunit. The enzyme is less active than the other chloroplast pyruvate kinase beta subunit encoded by AT5G52920. Involved in seed oil biosynthesis. Can partially complement the AT5G52920 mutant.O.I.H.G.
At1g32480840142oxidoreductase/ oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptorF:oxidoreductase activity, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;P:metabolic process;C:unknown;BOMFAPO.I.H.G.
At1g34430840346EMB3003 (embryo defective 3003)F:dihydrolipoyllysine-residue acetyltransferase activity, protein binding, acyltransferase activity;P:embryonic development ending in seed dormancy;C:cytosolic ribosome, plasma membrane, chloroplast, chloroplast envelope;OBMFPAO.I.H.G.
At1g42970840895GAPB (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE B SUBUNIT)Encodes chloroplast localized glyceraldehyde-3-phosphate dehydrogenase.O.I.H.G.
At1g47840841200HXK3 (HEXOKINASE 3)Encodes a putative hexokinase.O.I.H.G.
At1g48030841221mtLPD1 (mitochondrial lipoamide dehydrogenase 1)Encodes a mitochondrial lipoamide dehydrogenase whose expression is induced by light.O.I.H.G.
At1g48850841307EMB1144 (embryo defective 1144)F:chorismate synthase activity;P:embryonic development ending in seed dormancy, aromatic amino acid family biosynthetic process;C:nucleolus, chloroplast;OBAFPMO.I.H.G.
At1g488608413083-phosphoshikimate 1-carboxyvinyltransferase, putative / 5-enolpyruvylshikimate-3-phosphate, putative / EPSP synthase, putativeF:3-phosphoshikimate 1-carboxyvinyltransferase activity, catalytic activity, transferase activity, transferring alkyl or aryl (other than methyl) groups;P:glyphosate metabolic process, aromatic amino acid family biosynthetic process;C:chloroplast;BOPAFMO.I.H.G.
At1g50090841432aminotransferase class IV family proteinF:branched-chain-amino-acid transaminase activity, catalytic activity;P:branched chain family amino acid metabolic process, metabolic process;C:cellular_component unknown;BOFMPAO.I.H.G.
At1g50110841433branched-chain amino acid aminotransferase 6 / branched-chain amino acid transaminase 6 (BCAT6)F:branched-chain-amino-acid transaminase activity, catalytic activity;P:branched chain family amino acid metabolic process, metabolic process;C:cellular_component unknown;BOFMPAO.I.H.G.
At1g516808415934CL1 (4-COUMARATE:COA LIGASE 1)encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. In addition to 4-coumarate, it also converts ferulate. The catalytic efficiency was in the following (descending) order: p-coumaric acid, ferulic acid, caffeic acid and 5-OH-ferulic acid. At4CL1 was unable to use sinapic acid as substrate.O.I.H.G.
At1g53240841757malate dehydrogenase (NAD), mitochondrialF:malate dehydrogenase activity;P:response to cadmium ion, response to salt stress, response to cold, defense response to bacterium, peptidyl-cysteine S-nitrosylation;C:mitochondrion, cell wall, chloroplast;BOMPFAO.I.H.G.
At1g54220841863dihydrolipoamide S-acetyltransferase, putativeF:dihydrolipoyllysine-residue acetyltransferase activity, protein binding, acyltransferase activity;P:pyruvate metabolic process, metabolic process, acetyl-CoA biosynthetic process from pyruvate;C:mitochondrion;OBMFPAO.I.H.G.
At1g54340841875ICDH (ISOCITRATE DEHYDROGENASE)NADP-specific isocitrate dehydrogenase (ICDH)O.I.H.G.
At1g56190842072phosphoglycerate kinase, putativeF:phosphoglycerate kinase activity;P:response to cadmium ion, glycolysis;C:thylakoid, mitochondrion, chloroplast stroma, chloroplast, membrane;OBPMAFO.I.H.G.
At1g59900842284AT-E1 ALPHAencodes the e1 alpha subunit of the pyruvate dehydrogenase complex (PDC)O.I.H.G.
At1g60810842375ACLA-2One of the three genes encoding subunit A of the trimeric enzyme ATP Citrate lyaseO.I.H.G.
At1g62940842596ACOS5 (ACYL-COA SYNTHETASE 5)encodes an acyl-CoA synthetase, has in vitro activity towards medium- to long-chain fatty acids and their hydroxylated derivatives. Expressed in the tapetum. Involved in pollen wall exine formation. Null mutants were devoid of pollen grains at anther maturity and were completely male sterile.O.I.H.G.
At1g650608428144CL3encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. mRNA levels are not induced in response to wounding or to fungal infection by P. parasitica. mRNA is expressed in flowers, to a lesser degree in mature leaves and siliques and marginally in seedling roots and bolting stems of mature plants. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, ferulic acid, cinnamic acid and 5-OH-ferulic acid. At4CL3 was unable to use sinapic acid as substrate.O.I.H.G.
At1g65930842905isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putativeF:isocitrate dehydrogenase (NADP+) activity, copper ion binding;P:response to cadmium ion, response to salt stress, metabolic process;C:apoplast, plasma membrane;OBMPFAO.I.H.G.
At1g69370843269CM3 (chorismate mutase 3)Encodes chorismate mutase 3 (CM3).O.I.H.G.
At1g74000843738SS3 (STRICTOSIDINE SYNTHASE 3)encodes a protein similar to strictosidine synthase, which is involved in the production of monoterpene indole alkaloids. This gene belongs to a family of 13 members in Arabidopsis.O.I.H.G.
At1g74010843739strictosidine synthase family proteinF:strictosidine synthase activity;P:biosynthetic process;C:plant-type cell wall;PMBOAO.I.H.G.
At1g74020843740SS2 (STRICTOSIDINE SYNTHASE 2)Encodes AtSS-2 strictosidine synthase.O.I.H.G.
At1g74030843741enolase, putativeF:phosphopyruvate hydratase activity;P:in 12 processes;C:phosphopyruvate hydratase complex, chloroplast;OBMFAPO.I.H.G.
At1g74540843795CYP98A8member of CYP98AO.I.H.G.
At1g74550843796CYP98A9member of CYP98AO.I.H.G.
At1g79530844291GAPCP-1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE OF PLASTID 1)F:NAD or NADH binding, glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity, binding, catalytic activity, glyceraldehyde-3-phosphate dehydrogenase activity;P:glycolysis, glucose metabolic process, metabolic process;C:plastid, membrane;BOPFMAO.I.H.G.
At1g79550844293PGK (PHOSPHOGLYCERATE KINASE)Encodes cytosolic phosphoglycerate kinase (PGK).O.I.H.G.
At1g79750844314ATNADP-ME4 (NADP-malic enzyme 4)The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME4 is localized to chloroplasts. The gene is expressed throughout the whole plant and during embryogenesis and germination. A possible involvement in the fatty acid biosynthesis has been proposed.O.I.H.G.
At2g01140814643fructose-bisphosphate aldolase, putativeF:fructose-bisphosphate aldolase activity;P:response to oxidative stress, response to cadmium ion, pentose-phosphate shunt;C:mitochondrion, chloroplast, plastoglobule;OMBPFO.I.H.G.
At2g04400814980indole-3-glycerol phosphate synthase (IGPS)F:indole-3-glycerol-phosphate synthase activity;P:tryptophan biosynthetic process;C:chloroplast;BOAFPO.I.H.G.
At2g05710815120aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putativeProtein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.O.I.H.G.
At2g17130816218IDH2 (ISOCITRATE DEHYDROGENASE SUBUNIT 2)NAD+ dependent isocitrate dehydrogenase subunit 2 (IDH2)O.I.H.G.
At2g18450816359SDH1-2Nuclear encoded mitochondrial flavoprotein subunit of succinate dehydrogenase complex .O.I.H.G.
At2g19860816505HXK2 (HEXOKINASE 2)Encodes a protein with hexokinase activity (AtHXK2) and acts as a sensor for plant sugar responses.O.I.H.G.
At2g19900816509ATNADP-ME1 (NADP-malic enzyme 1)The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME1 is expressed in response to developmental and cell-specific signals.O.I.H.G.
At2g20340816553tyrosine decarboxylase, putativeF:pyridoxal phosphate binding, carboxy-lyase activity, catalytic activity, tyrosine decarboxylase activity;P:amino acid metabolic process, response to wounding;C:cellular_component unknown;MBOFPAVO.I.H.G.
At2g20420816561succinyl-CoA ligase (GDP-forming) beta-chain, mitochondrial, putative / succinyl-CoA synthetase, beta chain, putative / SCS-beta, putativeF:succinate-CoA ligase (GDP-forming) activity, ATP binding;P:response to cadmium ion, metabolic process;C:mitochondrion;OBMFAPO.I.H.G.
At2g21330816672fructose-bisphosphate aldolase, putativeF:fructose-bisphosphate aldolase activity, catalytic activity;P:response to cadmium ion, pentose-phosphate shunt;C:in 8 components;OMBPFO.I.H.G.
At2g21940816730shikimate kinase, putativeF:shikimate kinase activity, ATP binding;P:unknown;C:unknown;BOFPMAO.I.H.G.
At2g22480816781PFK5 (PHOSPHOFRUCTOKINASE 5)F:6-phosphofructokinase activity;P:glycolysis;C:6-phosphofructokinase complex, chloroplast;BOMFPAVO.I.H.G.
At2g22780816808PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1)encodes an peroxisomal NAD-malate dehydrogenase that is involved in fatty acid beta-oxidation through providing NAD to the process of converting fatty acyl CoA to acetyl CoA.O.I.H.G.
At2g29690817519ASA2 (ANTHRANILATE SYNTHASE 2)Encode a functional anthranilate synthase protein. Expressed at a constitutive basal level. Expression was not induced by wounding nor bacterial pathogen infiltration. Involved in aromatic amino acid biosynthesis.O.I.H.G.
At2g30490817599C4H (CINNAMATE-4-HYDROXYLASE)Encodes a cinnamate-4-hydroxylase.O.I.H.G.
At2g34590818024transketolase family proteinF:pyruvate dehydrogenase (acetyl-transferring) activity, transketolase activity;P:pollen tube development;C:chloroplast, chloroplast envelope;BOMPFAO.I.H.G.
At2g36460818220fructose-bisphosphate aldolase, putativeF:fructose-bisphosphate aldolase activity, catalytic activity;P:response to cadmium ion, response to salt stress, pentose-phosphate shunt;C:mitochondrion, plasma membrane, membrane;OMBPFO.I.H.G.
At2g36530818226LOS2Involved in light-dependent cold tolerance and encodes an enolase. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.O.I.H.G.
At2g37040818280pal1 (Phe ammonia lyase 1)encodes a protein similar to phenylalanine ammonia-lyaseO.I.H.G.
At2g40890818686CYP98A3 (cytochrome P450, family 98, subfamily A, polypeptide 3)encodes coumarate 3-hydroxylase (C3H), a P450-dependent monooxygenase. Involved in lignin biosynthesis and flavonoid biosynthesis. Also affects the biosynthesis of coumarins such as scopoletin and scopolin as a branching-out-pathway from the phenylpropanoid acid level.O.I.H.G.
At2g42790818879CSY3 (citrate synthase 3)Encodes a peroxisomal citrate synthase that is expressed throughout seedling and shoot development.O.I.H.G.
At2g44350819042ATCSencodes a mitochrondrion targeted citrate synthase, the first enzyme of the tricarboxylic acid cycle, catalyzing the condensation of acetyl-CoA and oxaloacetate, finally yielding citrate and CoA.O.I.H.G.
At2g45290819137transketolase, putativeF:catalytic activity, transketolase activity;P:response to cadmium ion;C:chloroplast stroma, chloroplast;OBMFAPO.I.H.G.
At2g453008191383-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthaseencodes 3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase involved in chorismate biosynthesisO.I.H.G.
At3g04050819560pyruvate kinase, putativeF:pyruvate kinase activity, magnesium ion binding, potassium ion binding, catalytic activity;P:glycolysis;C:cellular_component unknown;BOMPFAO.I.H.G.
At3g04120819567GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)encodes cytosolic GADPH (C subunit) involved in the glycolytic pathway but also interacts with H2O2 potentially placing it in a signalling cascade induced by ROS.O.I.H.G.
At3g06350819809MEE32 (MATERNAL EFFECT EMBRYO ARREST 32)F:NADP or NADPH binding, 3-dehydroquinate dehydratase activity, shikimate 5-dehydrogenase activity, binding, catalytic activity;P:embryonic development ending in seed dormancy;C:chloroplast stroma, chloroplast;BOAFPO.I.H.G.
At3g06650819845ACLB-1One of the two genes encoding subunit B of the trimeric enzyme ATP Citrate lyaseO.I.H.G.
At3g085908200062,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, putativeF:manganese ion binding, phosphoglycerate mutase activity, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity, catalytic activity, metal ion binding;P:response to cadmium ion;C:cytosol, apoplast;BOPFAMO.I.H.G.
At3g09810820139isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putativeF:isocitrate dehydrogenase (NAD+) activity, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;P:tricarboxylic acid cycle, metabolic process;C:mitochondrion;BOMFAPO.I.H.G.
At3g10340820196PAL4 (Phenylalanine ammonia-lyase 4)F:ammonia-lyase activity, ammonia ligase activity, catalytic activity;P:L-phenylalanine catabolic process, biosynthetic process;C:cytoplasm;BPOFMAO.I.H.G.
At3g12780820461PGK1 (PHOSPHOGLYCERATE KINASE 1)nuclear phosphoglycerate kinase (PGK1)O.I.H.G.
At3g13930820606dihydrolipoamide S-acetyltransferase, putativeF:dihydrolipoyllysine-residue acetyltransferase activity, protein binding, acyltransferase activity;P:pyruvate metabolic process, metabolic process;C:mitochondrion, chloroplast, chloroplast envelope;OBMFPAO.I.H.G.
At3g15020820731malate dehydrogenase (NAD), mitochondrial, putativeF:in 6 functions;P:defense response to bacterium;C:mitochondrion, apoplast, membrane;BOMPFAO.I.H.G.
At3g16950820951LPD1 (LIPOAMIDE DEHYDROGENASE 1)encodes a plastid lipoamide dehydrogenase, subunit of the pyruvate dehydrogenase complex which provides acetyl-CoA for de novo fatty acid biosynthesis. The gene is highly expressed in developing seeds.O.I.H.G.
At3g17240820984mtLPD2 (LIPOAMIDE DEHYDROGENASE 2)lipoamide dehydrogenase precursorO.I.H.G.
At3g19710821508BCAT4 (BRANCHED-CHAIN AMINOTRANSFERASE4)Belongs to the branched-chain amino acid aminotransferase gene family. Encodes a methionine-oxo-acid transaminase. Involved in the methionine chain elongation pathway that leads to the ultimate biosynthesis of methionine-derived glucosinolates.O.I.H.G.
At3g212308216774CL5 (4-coumarate:CoA ligase 5)The gene encodes a 4-coumarate coenzyme A ligase being able to use sinapate as substrate. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, 5-OH-ferulic acid, ferulic acid and sinapic acid. At4CL5 was unable to use cinnamic acid as substrate. Knockout of At4CL5 (4cl5) revealed no effect on syringyl lignin content indicating that the activity observed does probably not occur in vivo.O.I.H.G.
At3g212408216784CL2 (4-COUMARATE:COA LIGASE 2)encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, ferulic acid, 5-OH-ferulic acid and cinnamic acid. At4CL2 was unable to use sinapic acid as substrate.O.I.H.G.
At3g25960822193pyruvate kinase, putativeF:pyruvate kinase activity, magnesium ion binding, potassium ion binding, catalytic activity;P:glycolysis;C:unknown;BOMPFAO.I.H.G.
At3g26650822277GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT)Encodes one of the two subunits forming the photosynthetic glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and as such a constituent of the supramolecular complex with phosphoribulokinase (PRK) thought to be linked by a small peptide encoded by CP12-2. GapA-1 is coordinately expressed by light with PRK and CP12-2. The enzyme activity, tested in leaf protein extracts dropped significantly after external sucrose treatment for the photosynthetic GAPDH (NADPH-dependent) but not for the cytosolic GAPDH (NADH-dependent).O.I.H.G.
At3g27380822359SDH2-1One of three isoforms of the iron-sulfur component of the succinate dehydrogenase complex, a component of the mitochondrial respiratory chain complex II. The product of the nuclear encoded gene is imported into the mitochondrion. Expressed during germination and post-germinative growth.O.I.H.G.
At3g29200822573CM1 (CHORISMATE MUTASE 1)L-ascorbate peroxidaseO.I.H.G.
At3g47520823906MDH (MALATE DEHYDROGENASE)Encodes a protein with NAD-dependent malate dehydrogenase activity, located in chloroplasts.O.I.H.G.
At3g49160824077pyruvate kinase family proteinExpression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.O.I.H.G.
At3g49680824130BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.O.I.H.G.
At3g50520824216phosphoglycerate/bisphosphoglycerate mutase family proteinF:catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAO.I.H.G.
At3g52200824385LTA3dihydrolipoamide S-acetyltransferase (LTA3) mRNA, nuclearO.I.H.G.
At3g52930824459fructose-bisphosphate aldolase, putativeF:fructose-bisphosphate aldolase activity, catalytic activity;P:response to cadmium ion, response to salt stress, pentose-phosphate shunt;C:in 7 components;OMBPFO.I.H.G.
At3g52990824465pyruvate kinase, putativeF:pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity;P:response to cadmium ion, glycolysis;C:membrane;BOMPFAO.I.H.G.
At3g53260824493PAL2Encodes phenylalanine lyase.O.I.H.G.
At3g54640824629TSA1 (TRYPTOPHAN SYNTHASE ALPHA CHAIN)Catalyzes the conversion of indole-3-glycerolphosphate to indole, the penultimate reaction in the biosynthesis of tryptophan. Functions as a heterocomplex with tryptophan synthase beta subunit (TSA2).O.I.H.G.
At3g554108247072-oxoglutarate dehydrogenase E1 component, putative / oxoglutarate decarboxylase, putative / alpha-ketoglutaric dehydrogenase, putativeF:oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, oxoglutarate dehydrogenase (succinyl-transferring) activity, thiamin pyrophosphate binding;P:glycolysis, metabolic process;C:mitochondrion;OBMFPAO.I.H.G.
At3g55650824731pyruvate kinase, putativeF:pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity;P:glycolysis;C:mitochondrion;BOMPFAO.I.H.G.
At3g55810824747pyruvate kinase, putativeF:pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity;P:glycolysis;C:unknown;BOMPFAO.I.H.G.
At3g55870824753anthranilate synthase, alpha subunit, putativeF:oxo-acid-lyase activity, anthranilate synthase activity;P:tryptophan biosynthetic process, biosynthetic process;C:endomembrane system;BOFAPMO.I.H.G.
At3g58740825043CSY1 (CITRATE SYNTHASE 1)Encodes a peroxisomal citrate synthase that is expressed in siliques and developing seeds.O.I.H.G.
At3g58750825044CSY2 (citrate synthase 2)Encodes a peroxisomal citrate synthase that is expressed throughout seedling and shoot development.O.I.H.G.
At3g60100825180CSY5 (citrate synthase 5)F:citrate (SI)-synthase activity, transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer;P:cellular carbohydrate metabolic process, tricarboxylic acid cycle;C:mitochondrion;BOMFAPO.I.H.G.
At3g60750825246transketolase, putativeF:catalytic activity, transketolase activity;P:response to cadmium ion, response to salt stress;C:chloroplast stroma, chloroplast, chloroplast envelope;OBMFAPO.I.H.G.
At4g00570828222malate oxidoreductase, putativeF:oxidoreductase activity, acting on NADH or NADPH, NAD or NADP as acceptor, malic enzyme activity, ATP binding;P:oxidation reduction, malate metabolic process, metabolic process;C:mitochondrion, chloroplast;BOMPFAO.I.H.G.
At4g02610828226tryptophan synthase, alpha subunit, putativeF:tryptophan synthase activity;P:tryptophan biosynthetic process;C:chloroplast;BOAFPMO.I.H.G.
At4g051608258644-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putativeEncodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At4g05160 preferentially activates fatty acids with medium chain length (C6:0 and C7:0) as well as even-numbered long-chain fatty acids (C14:0, C16:0 and C18:0). At4g05160 was also able to catalyze the conversion of OPC-6:0 to its CoA ester and is therefore thought to be involved in the peroxisomal β-oxidation steps of jasmonic acid biosynthesis.O.I.H.G.
At4g16155827307dihydrolipoyl dehydrogenaseF:dihydrolipoyl dehydrogenase activity;P:cell redox homeostasis;C:chloroplast, chloroplast envelope;BOMAPFO.I.H.G.
At4g24620828564PGI1 (PHOSPHOGLUCOSE ISOMERASE 1)The PGI1 gene encodes the plastid phospho-glucose (Glc) isomerase. While pgi1-1 mutant has a deficiency in leaf starch synthesis, it accumulates starch in root cap cells. Flowering time of the pgi1-1 mutant is significantly delayed under short-day conditions.O.I.H.G.
At4g26270828733PFK3 (PHOSPHOFRUCTOKINASE 3)F:6-phosphofructokinase activity;P:glycolysis;C:cytosol, 6-phosphofructokinase complex;BOMFPAVO.I.H.G.
At4g26390828745pyruvate kinase, putativeF:pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity;P:glycolysis;C:cellular_component unknown;BOMPFAO.I.H.G.
At4g26520828758fructose-bisphosphate aldolase, cytoplasmicF:fructose-bisphosphate aldolase activity;P:pentose-phosphate shunt, response to hypoxia;C:unknown;OMBPFO.I.H.G.
At4g26530828759fructose-bisphosphate aldolase, putativeF:fructose-bisphosphate aldolase activity;P:glycolysis, metabolic process;C:chloroplast;OMBPFO.I.H.G.
At4g269108287982-oxoacid dehydrogenase family proteinF:dihydrolipoyllysine-residue succinyltransferase activity, acyltransferase activity;P:tricarboxylic acid cycle, metabolic process;C:mitochondrion, membrane;OBMFPAVO.I.H.G.
At4g26970828805aconitate hydratase/ copper ion bindingF:aconitate hydratase activity, copper ion binding;P:response to cadmium ion;C:mitochondrion, chloroplast;OBMFAPO.I.H.G.
At4g27070828815TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2)Tryptophan synthase beta. Expressed at low levels in all tissues.O.I.H.G.
At4g28680828986tyrosine decarboxylase, putativeEncodes a stress-induced tyrosine decarboxylase (TyrDC). Recombinant (His)6-TyrDC expressed in E. coli catalyzes the conversion of L-tyrosine to tyramine. Recombinant TyrDC forms tetramers.O.I.H.G.
At4g29130829034HXK1 (HEXOKINASE 1)Encodes a hexokinase (HXK1) in the plant glucose-signaling network. Functions as a glucose sensor to interrelate nutrient, light, and hormone signaling networks for controlling growth and development in response to the changing environment.O.I.H.G.
At4g29220829043PFK1 (PHOSPHOFRUCTOKINASE 1)F:6-phosphofructokinase activity;P:glycolysis;C:cytosol, 6-phosphofructokinase complex, plasma membrane;BOMPFAVO.I.H.G.
At4g32840829420PFK6 (PHOSPHOFRUCTOKINASE 6)F:6-phosphofructokinase activity;P:glycolysis;C:cytosol, 6-phosphofructokinase complex;BOMFPAVO.I.H.G.
At4g33510829489DHS2 (3-deoxy-d-arabino-heptulosonate 7-phosphate synthase)Enzyme catalyzing the first committed step in aromatic amino acid biosynthesisO.I.H.G.
At4g35260829679IDH1 (ISOCITRATE DEHYDROGENASE 1)NAD+ dependent isocitrate dehydrogenase subunit 1 (IDH1)O.I.H.G.
At4g35650829717isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putativeF:isocitrate dehydrogenase (NAD+) activity, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;P:tricarboxylic acid cycle, metabolic process;C:mitochondrion;BOFMAPO.I.H.G.
At4g35830829737aconitate hydratase, cytoplasmic / citrate hydro-lyase / aconitase (ACO)F:aconitate hydratase activity, 4 iron, 4 sulfur cluster binding;P:response to salt stress;C:mitochondrion, apoplast, plasma membrane, vacuole;OBFMAPO.I.H.G.
At4g37840829940HKL3 (HEXOKINASE-LIKE 3)Encodes a putative hexokinase.O.I.H.G.
At4g38970830052fructose-bisphosphate aldolase, putativeProtein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.O.I.H.G.
At4g39540830108shikimate kinase family proteinF:shikimate kinase activity, ATP binding;P:aromatic amino acid family biosynthetic process;C:unknown;BOPFMAO.I.H.G.
At4g39980830159DHS1 (3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE 1)Encodes a 2-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase, which catalyzes the first committed step in aromatic amino acid biosynthesis. Gene expression is induced by wounding and pathogenic bacteria Pseudomonas syringae.O.I.H.G.
At5g03290831884isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putativeF:isocitrate dehydrogenase (NAD+) activity, ATP binding;P:tricarboxylic acid cycle, metabolic process;C:mitochondrion, chloroplast;BOMFAPO.I.H.G.
At5g03690831759fructose-bisphosphate aldolase, putativeF:fructose-bisphosphate aldolase activity, catalytic activity;P:pentose-phosphate shunt;C:unknown;OMBPFO.I.H.G.
At5g04230830302PAL3 (PHENYL ALANINE AMMONIA-LYASE 3)Member of Phenylalanine ammonialyase (PAL) gene family.Differs significantly from PAL1 and PAL2 and other sequenced plant PAL genesO.I.H.G.
At5g05590830442PAI2 (PHOSPHORIBOSYLANTHRANILATE ISOMERASE 2)Encodes phosphoribosylanthranilate isomerase which catalyzes the third step in the tryptophan biosynthetic pathway.O.I.H.G.
At5g05730830457ASA1 (ANTHRANILATE SYNTHASE ALPHA SUBUNIT 1)ASA1 encodes the alpha subunit of anthranilate synthase, which catalyzes the rate-limiting step of tryptophan synthesis. ASA1 is induced by ethylene, and forms a link between ethylene signalling and auxin synthesis in roots.O.I.H.G.
At5g08300830726succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putativeF:succinate-CoA ligase (GDP-forming) activity, metal ion binding;P:response to cadmium ion, metabolic process;C:mitochondrion, cell wall;OBMAFPO.I.H.G.
At5g08570830758pyruvate kinase, putativeF:pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity;P:glycolysis;C:cellular_component unknown;BOMPFAO.I.H.G.
At5g09660830825PMDH2 (peroxisomal NAD-malate dehydrogenase 2)encodes a microbody NAD-dependent malate dehydrogenase encodes an peroxisomal NAD-malate dehydrogenase that is involved in fatty acid beta-oxidation through providing NAD to the process of converting fatty acyl CoA to acetyl CoA.O.I.H.G.
At5g10870830954ATCM2 (chorismate mutase 2)Encodes chorismate mutase AtCM2.O.I.H.G.
At5g11670831039ATNADP-ME2 (NADP-malic enzyme 2)The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME2 is presumably a cytosolic enzyme involved in malate metabolism and possibly assisting the oxidative pentose phosphate pathway. AtNADP-ME2 counts for the major part of NADP-ME activity in mature tissues of Arabidopsis.O.I.H.G.
At5g13420831183transaldolase, putativeF:catalytic activity, transaldolase activity;P:response to cadmium ion;C:mitochondrion, chloroplast stroma, chloroplast;BOPMAFO.I.H.G.
At5g14590831311isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putativeF:isocitrate dehydrogenase (NADP+) activity, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;P:isocitrate metabolic process, metabolic process;C:mitochondrion, chloroplast;OBMPFAO.I.H.G.
At5g17990831666TRP1 (tryptophan biosynthesis 1)Encodes the tryptophan biosynthetic enzyme phosphoribosylanthranilate transferase (PAT1, called trpD in bacteria). Converts anthranilate and phosphoribosylpyrophosphate into phosphoribosylanthranilate and inorganic pyrophosphate.O.I.H.G.
At5g23250832389succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putativeF:succinate-CoA ligase (ADP-forming) activity, succinate-CoA ligase (GDP-forming) activity, binding, ATP citrate synthase activity, catalytic activity;P:metabolic process;C:mitochondrion;OBMAFPO.I.H.G.
At5g25880832657ATNADP-ME3 (NADP-malic enzyme 3)The malic enzyme (EC 1.1.1.40) encoded by the ATNADP-ME3 is presumably cytosolic and restricted in its expression by both developmental and cell-specific signals.O.I.H.G.
At5g282372746023tryptophan synthase, beta subunit, putativeF:pyridoxal phosphate binding, tryptophan synthase activity, catalytic activity;P:tryptophan biosynthetic process, metabolic process, tryptophan metabolic process;C:unknown;BOAFPMO.I.H.G.
At5g36160833613aminotransferase-relatedF:1-aminocyclopropane-1-carboxylate synthase activity, pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, transaminase activity, catalytic activity;P:tyrosine catabolic process to phosphoenolpyruvate, cellular amino acid and derivative metabolic process, biosynthetic process;C:cellular_component unknown;BOPMAFO.I.H.G.
At5g38530833841tryptophan synthase-relatedF:pyridoxal phosphate binding, tryptophan synthase activity, catalytic activity;P:tryptophan biosynthetic process, metabolic process;C:unknown;BOAFPMO.I.H.G.
At5g40650834065SDH2-2One of three isoforms of the iron-sulfur component of the succinate dehydrogenase complex, a component of the mitochondrial respiratory chain complex II. The product of the nuclear encoded gene is imported into the mitochondrion. Expressed during germination and post-germinative growth.O.I.H.G.
At5g42740834283glucose-6-phosphate isomerase, cytosolic (PGIC)F:glucose-6-phosphate isomerase activity;P:response to cadmium ion, gluconeogenesis, glycolysis;C:cellular_component unknown;BOPMFAO.I.H.G.
At5g43330834351malate dehydrogenase, cytosolic, putativeF:in 6 functions;P:cellular carbohydrate metabolic process, glycolysis, malate metabolic process, carbohydrate metabolic process, metabolic process;C:plasma membrane;BOMPFAO.I.H.G.
At5g48220834875indole-3-glycerol phosphate synthase, putativeF:indole-3-glycerol-phosphate synthase activity, catalytic activity;P:metabolic process, tryptophan metabolic process;C:chloroplast, chloroplast stroma;BOAFPO.I.H.G.
At5g49460835006ACLB-2 (ATP CITRATE LYASE SUBUNIT B 2)One of the two genes encoding subunit B of the cytosolic enzyme ATP Citrate Lyase (ACL)O.I.H.G.
At5g50850835157MAB1 (MACCI-BOU)F:pyruvate dehydrogenase (acetyl-transferring) activity, catalytic activity;P:defense response to bacterium;C:mitochondrion, nucleolus, plasma membrane;BOMPFAO.I.H.G.
At5g52920835369PKP-BETA1 (PLASTIDIC PYRUVATE KINASE BETA SUBUNIT 1)encodes a dominant chloroplast pyruvate kinase beta subunit. Important for seed oil biosynthesis. Ubiquitously expressed, with significantly increased expression in maturing seeds. The mutant plant has wrinkled seeds, with a 50-70% reduction in seed fatty acid content.O.I.H.G.
At5g53970835480aminotransferase, putativeencodes tyrosine aminotransferase which is strongly induced upon aging and coronatine treatmentO.I.H.G.
At5g54810835571TSB1 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 1)A.thaliana tryptophan synthase beta subunit (trpB)O.I.H.G.
At5g550708355982-oxoacid dehydrogenase family proteinF:dihydrolipoyllysine-residue succinyltransferase activity, acyltransferase activity;P:response to oxidative stress, metabolic process;C:cytosolic ribosome, mitochondrion;BOMPFVAO.I.H.G.
At5g56350835735pyruvate kinase, putativeF:pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity;P:glycolysis;C:cellular_component unknown;BOMPFAO.I.H.G.
At5g56630835764PFK7 (PHOSPHOFRUCTOKINASE 7)F:6-phosphofructokinase activity;P:glycolysis;C:cytosol, 6-phosphofructokinase complex;BOMFPAVO.I.H.G.
At5g56720835773malate dehydrogenase, cytosolic, putativeF:in 6 functions;P:cellular carbohydrate metabolic process, glycolysis, malate metabolic process, carbohydrate metabolic process, metabolic process;C:membrane;BOMPFAO.I.H.G.
At5g57850835895aminotransferase class IV family proteinF:4-amino-4-deoxychorismate lyase activity, catalytic activity;P:tetrahydrofolate biosynthetic process;C:chloroplast;BOAPFO.I.H.G.
At5g57890835900anthranilate synthase beta subunit, putativeF:anthranilate synthase activity;P:tryptophan biosynthetic process, response to bacterium;C:unknown;BOFMAPO.I.H.G.
At5g58330835945malate dehydrogenase (NADP), chloroplast, putativeF:oxidoreductase activity, binding, malate dehydrogenase activity, catalytic activity, malate dehydrogenase (NADP+) activity;P:malate metabolic process, carbohydrate metabolic process, metabolic process;C:in 6 components;BOMPFAO.I.H.G.
At5g61580836279PFK4 (PHOSPHOFRUCTOKINASE 4)F:6-phosphofructokinase activity;P:glycolysis;C:6-phosphofructokinase complex, chloroplast;BOMPFAVO.I.H.G.
At5g63680836488pyruvate kinase, putativeF:pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity;P:response to cadmium ion, glycolysis;C:plasma membrane;BOMPFAO.I.H.G.
At5g65165836640SDH2-3One of three isoforms of the iron-sulfur component of the succinate dehydrogenase complex, a component of the mitochondrial respiratory chain complex II. The product of the nuclear encoded gene is imported into the mitochondrion. Transcripts appear during seed maturation, persist through dessication, are abundant in dry seeds, and markedly decline during germination.O.I.H.G.
At5g657508367042-oxoglutarate dehydrogenase E1 component, putative / oxoglutarate decarboxylase, putative / alpha-ketoglutaric dehydrogenase, putativeF:oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, oxoglutarate dehydrogenase (succinyl-transferring) activity, thiamin pyrophosphate binding;P:response to cadmium ion;C:mitochondrion;OBMFPAO.I.H.G.
At5g65780836707ATBCAT-5encodes a chloroplast branched-chain amino acid aminotransferase, can complement the yeast leu/iso-leu/val auxotrophy mutantO.I.H.G.
At5g661208367443-dehydroquinate synthase, putativeF:3-dehydroquinate synthase activity, carbon-oxygen lyase activity, acting on phosphates;P:aromatic amino acid family biosynthetic process, biosynthetic process;C:chloroplast;OBFAPMVO.I.H.G.
At5g66760836809SDH1-1One of two genes in Arabidopsis that encode a flavoprotein subunit of the mitochondrial succinate dehydrogenase complex.O.I.H.G.

Comparison with co-expressed genes



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