Metabolic pathway to genes

Genes assigned in the pathway

Query pathway ID 00710
Pathway name Carbon fixation in photosynthetic organisms
Organism Arabidopsis_thaliana
Database KEGG PATHWAY

Click Gene ID to show a list of co-expressed genes.

Gene ID Repr. ID Gene name Functional description O.I. H.G. Other DB
At1g04410839527malate dehydrogenase, cytosolic, putativeF:in 6 functions;P:response to cadmium ion, response to salt stress;C:in 7 components;BOMPFAO.I.H.G.
At1g12900837848GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2)F:NAD or NADH binding, glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity, binding, glyceraldehyde-3-phosphate dehydrogenase activity, catalytic activity;P:glycolysis, glucose metabolic process, metabolic process;C:apoplast, chloroplast stroma, chloroplast, membrane, chloroplast envelope;BOPFMAO.I.H.G.
At1g17290838301AlaAT1 (ALANINE AMINOTRANSFERAS)Encodes for alanine aminotransferase (ALAAT1), involved in alanine catabolism during plants recovery from hypoxiaO.I.H.G.
At1g23310838940GGT1 (GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE)Identified by cloning the gene that corresponded to a purified protein having glyoxylate aminotransferase activity. Localized to the peroxisome and thought to be involved in photorespiration/ metabolic salvage pathway.O.I.H.G.
At1g32060840098PRK (PHOSPHORIBULOKINASE)F:protein binding, phosphoribulokinase activity, ATP binding;P:response to cold, defense response to bacterium, peptidyl-cysteine S-nitrosylation, biosynthetic process;C:in 8 components;BPOMFAVO.I.H.G.
At1g32440840138PKp3 (plastidial pyruvate kinase 3)encodes a chloroplast pyruvate kinase beta subunit. The enzyme is less active than the other chloroplast pyruvate kinase beta subunit encoded by AT5G52920. Involved in seed oil biosynthesis. Can partially complement the AT5G52920 mutant.O.I.H.G.
At1g42970840895GAPB (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE B SUBUNIT)Encodes chloroplast localized glyceraldehyde-3-phosphate dehydrogenase.O.I.H.G.
At1g43670840953fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putativeF:fructose 1,6-bisphosphate 1-phosphatase activity, phosphoric ester hydrolase activity;P:carbohydrate metabolic process, fructose metabolic process;C:cellular_component unknown;BOMPFAO.I.H.G.
At1g53240841757malate dehydrogenase (NAD), mitochondrialF:malate dehydrogenase activity;P:response to cadmium ion, response to salt stress, response to cold, defense response to bacterium, peptidyl-cysteine S-nitrosylation;C:mitochondrion, cell wall, chloroplast;BOMPFAO.I.H.G.
At1g53310841765ATPPC1 (PHOSPHOENOLPYRUVATE CARBOXYLASE 1)Encodes one of four Arabidopsis phosphoenolpyruvate carboxylase proteins.O.I.H.G.
At1g56190842072phosphoglycerate kinase, putativeF:phosphoglycerate kinase activity;P:response to cadmium ion, glycolysis;C:thylakoid, mitochondrion, chloroplast stroma, chloroplast, membrane;OBPMAFO.I.H.G.
At1g62800842579ASP4 (ASPARTATE AMINOTRANSFERASE 4)Encodes aspartate aminotransferase (Asp4).O.I.H.G.
At1g63290842635ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putativeF:ribulose-phosphate 3-epimerase activity, catalytic activity;P:carbohydrate metabolic process, metabolic process;C:plasma membrane;OBMFPAO.I.H.G.
At1g67090843029RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)F:ribulose-bisphosphate carboxylase activity, copper ion binding;P:response to blue light, response to cold, carbon utilization by fixation of carbon dioxide, response to red light, response to far red light;C:in 10 components;POBO.I.H.G.
At1g68750843206ATPPC4Encodes one of four Arabidopsis phosphoenolpyruvate carboxylase proteins.O.I.H.G.
At1g70580843395AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2)Similar to glutamate-glyoxylate transaminase enzyme encoded by AOAT1O.I.H.G.
At1g71100843450RSW10 (RADIAL SWELLING 10)Encodes a ribose 5-phosphate isomerase involved in the formation of uridine used for the synthesis of UDP-sugars. Mutants of this gene are affected in cellulose biosynthesis.O.I.H.G.
At1g79550844293PGK (PHOSPHOGLYCERATE KINASE)Encodes cytosolic phosphoglycerate kinase (PGK).O.I.H.G.
At1g79750844314ATNADP-ME4 (NADP-malic enzyme 4)The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME4 is localized to chloroplasts. The gene is expressed throughout the whole plant and during embryogenesis and germination. A possible involvement in the fatty acid biosynthesis has been proposed.O.I.H.G.
At2g01140814643fructose-bisphosphate aldolase, putativeF:fructose-bisphosphate aldolase activity;P:response to oxidative stress, response to cadmium ion, pentose-phosphate shunt;C:mitochondrion, chloroplast, plastoglobule;OMBPFO.I.H.G.
At2g01290814657ribose-5-phosphate isomeraseF:ribose-5-phosphate isomerase activity;P:glucose catabolic process to lactate and acetate, 5-phosphoribose 1-diphosphate biosynthetic process, reductive pentose-phosphate cycle, D-ribose catabolic process, pentose-phosphate shunt, non-oxidative branch;C:cytoplasm;BOAFMPO.I.H.G.
At2g19900816509ATNADP-ME1 (NADP-malic enzyme 1)The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME1 is expressed in response to developmental and cell-specific signals.O.I.H.G.
At2g21170816652TIM (TRIOSEPHOSPHATE ISOMERASE)Encodes triosephosphate isomerase.O.I.H.G.
At2g21330816672fructose-bisphosphate aldolase, putativeF:fructose-bisphosphate aldolase activity, catalytic activity;P:response to cadmium ion, pentose-phosphate shunt;C:in 8 components;OMBPFO.I.H.G.
At2g22780816808PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1)encodes an peroxisomal NAD-malate dehydrogenase that is involved in fatty acid beta-oxidation through providing NAD to the process of converting fatty acyl CoA to acetyl CoA.O.I.H.G.
At2g30970817648ASP1 (ASPARTATE AMINOTRANSFERASE 1)ASPARTATE AMINOTRANSFERASE 1O.I.H.G.
At2g36460818220fructose-bisphosphate aldolase, putativeF:fructose-bisphosphate aldolase activity, catalytic activity;P:response to cadmium ion, response to salt stress, pentose-phosphate shunt;C:mitochondrion, plasma membrane, membrane;OMBPFO.I.H.G.
At2g42600818860ATPPC2 (PHOSPHOENOLPYRUVATE CARBOXYLASE 2)Encodes one of four Arabidopsis phosphoenolpyruvate carboxylase proteins.O.I.H.G.
At2g45290819137transketolase, putativeF:catalytic activity, transketolase activity;P:response to cadmium ion;C:chloroplast stroma, chloroplast;OBMFAPO.I.H.G.
At3g01850821068ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putativeF:ribulose-phosphate 3-epimerase activity, catalytic activity;P:carbohydrate metabolic process, metabolic process;C:endomembrane system;OBMFPAO.I.H.G.
At3g04050819560pyruvate kinase, putativeF:pyruvate kinase activity, magnesium ion binding, potassium ion binding, catalytic activity;P:glycolysis;C:cellular_component unknown;BOMPFAO.I.H.G.
At3g04790819639ribose 5-phosphate isomerase-relatedF:ribose-5-phosphate isomerase activity;P:defense response to bacterium, reductive pentose-phosphate cycle;C:thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast envelope;BOAFMPO.I.H.G.
At3g12780820461PGK1 (PHOSPHOGLYCERATE KINASE 1)nuclear phosphoglycerate kinase (PGK1)O.I.H.G.
At3g14940820723ATPPC3 (PHOSPHOENOLPYRUVATE CARBOXYLASE 3)One of four genes encoding phosphoenolpyruvate carboxylase, its mRNA is most abundantly expressed in roots and siliques.O.I.H.G.
At3g15020820731malate dehydrogenase (NAD), mitochondrial, putativeF:in 6 functions;P:defense response to bacterium;C:mitochondrion, apoplast, membrane;BOMPFAO.I.H.G.
At3g25960822193pyruvate kinase, putativeF:pyruvate kinase activity, magnesium ion binding, potassium ion binding, catalytic activity;P:glycolysis;C:unknown;BOMPFAO.I.H.G.
At3g26650822277GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT)Encodes one of the two subunits forming the photosynthetic glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and as such a constituent of the supramolecular complex with phosphoribulokinase (PRK) thought to be linked by a small peptide encoded by CP12-2. GapA-1 is coordinately expressed by light with PRK and CP12-2. The enzyme activity, tested in leaf protein extracts dropped significantly after external sucrose treatment for the photosynthetic GAPDH (NADPH-dependent) but not for the cytosolic GAPDH (NADH-dependent).O.I.H.G.
At3g47520823906MDH (MALATE DEHYDROGENASE)Encodes a protein with NAD-dependent malate dehydrogenase activity, located in chloroplasts.O.I.H.G.
At3g49160824077pyruvate kinase family proteinExpression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.O.I.H.G.
At3g52930824459fructose-bisphosphate aldolase, putativeF:fructose-bisphosphate aldolase activity, catalytic activity;P:response to cadmium ion, response to salt stress, pentose-phosphate shunt;C:in 7 components;OMBPFO.I.H.G.
At3g52990824465pyruvate kinase, putativeF:pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity;P:response to cadmium ion, glycolysis;C:membrane;BOMPFAO.I.H.G.
At3g54050824572fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putativeF:fructose 1,6-bisphosphate 1-phosphatase activity, phosphoric ester hydrolase activity;P:response to cold, fructose metabolic process;C:apoplast, stromule, chloroplast stroma, chloroplast;BOMPFAO.I.H.G.
At3g55440824710TPI (TRIOSEPHOSPHATE ISOMERASE)Encodes triosephosphate isomerase.O.I.H.G.
At3g55650824731pyruvate kinase, putativeF:pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity;P:glycolysis;C:mitochondrion;BOMPFAO.I.H.G.
At3g55800824746SBPASE (sedoheptulose-bisphosphatase)Encodes the chloroplast enzyme sedoheptulose-1,7-bisphosphatase (SBPase), involved in the carbon reduction of the Calvin cycle. Increase in SBPase activity in transgenic lines accumulate up to 50% more sucrose and starch than wild-type.O.I.H.G.
At3g55810824747pyruvate kinase, putativeF:pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity;P:glycolysis;C:unknown;BOMPFAO.I.H.G.
At3g60750825246transketolase, putativeF:catalytic activity, transketolase activity;P:response to cadmium ion, response to salt stress;C:chloroplast stroma, chloroplast, chloroplast envelope;OBMFAPO.I.H.G.
At4g00570828222malate oxidoreductase, putativeF:oxidoreductase activity, acting on NADH or NADPH, NAD or NADP as acceptor, malic enzyme activity, ATP binding;P:oxidation reduction, malate metabolic process, metabolic process;C:mitochondrion, chloroplast;BOMPFAO.I.H.G.
At4g15530827226PPDK (pyruvate orthophosphate dikinase)The product of this long transcript was shown to be targeted to the chloroplast, whereas the shorter transcript (no targeting sequence) accumulates in the cytosol. They were also found in slightly different tissues.O.I.H.G.
At4g26390828745pyruvate kinase, putativeF:pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity;P:glycolysis;C:cellular_component unknown;BOMPFAO.I.H.G.
At4g26520828758fructose-bisphosphate aldolase, cytoplasmicF:fructose-bisphosphate aldolase activity;P:pentose-phosphate shunt, response to hypoxia;C:unknown;OMBPFO.I.H.G.
At4g26530828759fructose-bisphosphate aldolase, putativeF:fructose-bisphosphate aldolase activity;P:glycolysis, metabolic process;C:chloroplast;OMBPFO.I.H.G.
At4g31990829330ASP5 (ASPARTATE AMINOTRANSFERASE 5)encodes a plastid-localized aspartate aminotransferaseO.I.H.G.
At4g37870829943PCK1 (PHOSPHOENOLPYRUVATE CARBOXYKINASE 1)Encodes a putative phosphoenolpyruvate carboxykinase (ATP-dependent).O.I.H.G.
At4g38970830052fructose-bisphosphate aldolase, putativeProtein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.O.I.H.G.
At5g03690831759fructose-bisphosphate aldolase, putativeF:fructose-bisphosphate aldolase activity, catalytic activity;P:pentose-phosphate shunt;C:unknown;OMBPFO.I.H.G.
At5g08570830758pyruvate kinase, putativeF:pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity;P:glycolysis;C:cellular_component unknown;BOMPFAO.I.H.G.
At5g09660830825PMDH2 (peroxisomal NAD-malate dehydrogenase 2)encodes a microbody NAD-dependent malate dehydrogenase encodes an peroxisomal NAD-malate dehydrogenase that is involved in fatty acid beta-oxidation through providing NAD to the process of converting fatty acyl CoA to acetyl CoA.O.I.H.G.
At5g11520831024ASP3 (ASPARTATE AMINOTRANSFERASE 3)Encodes the chloroplastic isozyme of aspartate aminotransferase. Involved in aspartate biosynthesis and nitrogen metabolism. mRNA is expressed in senescing leaves.O.I.H.G.
At5g11670831039ATNADP-ME2 (NADP-malic enzyme 2)The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME2 is presumably a cytosolic enzyme involved in malate metabolism and possibly assisting the oxidative pentose phosphate pathway. AtNADP-ME2 counts for the major part of NADP-ME activity in mature tissues of Arabidopsis.O.I.H.G.
At5g19550832075ASP2 (ASPARTATE AMINOTRANSFERASE 2)Nitrogen metabolism. Major cytosolic isoenzyme controlling aspartate biosynthesis in the light.O.I.H.G.
At5g25880832657ATNADP-ME3 (NADP-malic enzyme 3)The malic enzyme (EC 1.1.1.40) encoded by the ATNADP-ME3 is presumably cytosolic and restricted in its expression by both developmental and cell-specific signals.O.I.H.G.
At5g38410833828ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)F:ribulose-bisphosphate carboxylase activity;P:response to blue light, carbon utilization by fixation of carbon dioxide, response to red light, response to far red light;C:in 8 components;POBO.I.H.G.
At5g38420833829ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B)F:ribulose-bisphosphate carboxylase activity;P:response to blue light, carbon utilization by fixation of carbon dioxide, response to red light, response to far red light;C:in 8 components;POBO.I.H.G.
At5g38430833830ribulose bisphosphate carboxylase small chain 1B / RuBisCO small subunit 1B (RBCS-1B) (ATS1B)F:ribulose-bisphosphate carboxylase activity;P:response to blue light, carbon utilization by fixation of carbon dioxide, response to red light, response to far red light;C:in 7 components;POBO.I.H.G.
At5g43330834351malate dehydrogenase, cytosolic, putativeF:in 6 functions;P:cellular carbohydrate metabolic process, glycolysis, malate metabolic process, carbohydrate metabolic process, metabolic process;C:plasma membrane;BOMPFAO.I.H.G.
At5g44520834479ribose 5-phosphate isomerase-relatedF:ribose-5-phosphate isomerase activity;P:glucose catabolic process to lactate and acetate, 5-phosphoribose 1-diphosphate biosynthetic process, reductive pentose-phosphate cycle, D-ribose catabolic process, pentose-phosphate shunt, non-oxidative branch;C:chloroplast;BOAPMFO.I.H.G.
At5g52920835369PKP-BETA1 (PLASTIDIC PYRUVATE KINASE BETA SUBUNIT 1)encodes a dominant chloroplast pyruvate kinase beta subunit. Important for seed oil biosynthesis. Ubiquitously expressed, with significantly increased expression in maturing seeds. The mutant plant has wrinkled seeds, with a 50-70% reduction in seed fatty acid content.O.I.H.G.
At5g56350835735pyruvate kinase, putativeF:pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity;P:glycolysis;C:cellular_component unknown;BOMPFAO.I.H.G.
At5g56720835773malate dehydrogenase, cytosolic, putativeF:in 6 functions;P:cellular carbohydrate metabolic process, glycolysis, malate metabolic process, carbohydrate metabolic process, metabolic process;C:membrane;BOMPFAO.I.H.G.
At5g58330835945malate dehydrogenase (NADP), chloroplast, putativeF:oxidoreductase activity, binding, malate dehydrogenase activity, catalytic activity, malate dehydrogenase (NADP+) activity;P:malate metabolic process, carbohydrate metabolic process, metabolic process;C:in 6 components;BOMPFAO.I.H.G.
At5g61410836262RPEArabidopsis thaliana ribulose-5-phosphate-3-epimerase mRNAO.I.H.G.
At5g63680836488pyruvate kinase, putativeF:pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity;P:response to cadmium ion, glycolysis;C:plasma membrane;BOMPFAO.I.H.G.
At5g65690836696PCK2 (PHOSPHOENOLPYRUVATE CARBOXYKINASE 2)Encodes a putative phosphoenolpyruvate carboxykinase (ATP-dependent).O.I.H.G.
Arthcp030O.I.H.G.

Comparison with co-expressed genes



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