Metabolic pathway to genes

Genes assigned in the pathway

Query pathway ID 00400
Pathway name Phenylalanine, tyrosine and tryptophan biosynthesis
Organism Arabidopsis_thaliana
Database KEGG PATHWAY

Click Gene ID to show a list of co-expressed genes.

Gene ID Repr. ID Gene name Functional description O.I. H.G. Other DB
At1g07780837292PAI1 (PHOSPHORIBOSYLANTHRANILATE ISOMERASE 1)Encodes phosphoribosylanthranilate isomerase which catalyzes the third step of the tryptophan biosynthetic pathway. Member of gene family.O.I.H.G.
At1g224108388472-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putativeF:3-deoxy-7-phosphoheptulonate synthase activity;P:aromatic amino acid family biosynthetic process;C:membrane;OBPFO.I.H.G.
At1g24807839085anthranilate synthase beta subunit, putativeF:catalytic activity, anthranilate synthase activity;P:glutamine metabolic process, biosynthetic process, metabolic process;C:chloroplast;BOFAMPO.I.H.G.
At1g24909839089anthranilate synthase beta subunit, putativeF:catalytic activity, anthranilate synthase activity;P:glutamine metabolic process, biosynthetic process, metabolic process;C:unknown;BOFAMPO.I.H.G.
At1g25220839103ASB1 (ANTHRANILATE SYNTHASE BETA SUBUNIT 1)Catalyzes the first step of tryptophan biosynthesis: Chorismate L-Glutamine = Anthranilate Pyruvate L-Glutamate. Functions as a heterocomplex with anthranilate synthase alpha subunit (ASA1 or ASA2).O.I.H.G.
At1g29410839817PAI3 (phosphoribosylanthranilate isomerase 3)Encodes phosphoribosylanthranilate isomerase which catalyzes the third step in tryptophan biosynthesis.O.I.H.G.
At1g48850841307EMB1144 (embryo defective 1144)F:chorismate synthase activity;P:embryonic development ending in seed dormancy, aromatic amino acid family biosynthetic process;C:nucleolus, chloroplast;OBAFPMO.I.H.G.
At1g488608413083-phosphoshikimate 1-carboxyvinyltransferase, putative / 5-enolpyruvylshikimate-3-phosphate, putative / EPSP synthase, putativeF:3-phosphoshikimate 1-carboxyvinyltransferase activity, catalytic activity, transferase activity, transferring alkyl or aryl (other than methyl) groups;P:glyphosate metabolic process, aromatic amino acid family biosynthetic process;C:chloroplast;BOPAFMO.I.H.G.
At1g62800842579ASP4 (ASPARTATE AMINOTRANSFERASE 4)Encodes aspartate aminotransferase (Asp4).O.I.H.G.
At1g69370843269CM3 (chorismate mutase 3)Encodes chorismate mutase 3 (CM3).O.I.H.G.
At1g71920843523histidinol-phosphate aminotransferase, putativeF:transferase activity, transferring nitrogenous groups, pyridoxal phosphate binding, histidinol-phosphate transaminase activity, catalytic activity;P:biosynthetic process, histidine biosynthetic process;C:chloroplast;BOAPFMO.I.H.G.
At2g04400814980indole-3-glycerol phosphate synthase (IGPS)F:indole-3-glycerol-phosphate synthase activity;P:tryptophan biosynthetic process;C:chloroplast;BOAFPO.I.H.G.
At2g21940816730shikimate kinase, putativeF:shikimate kinase activity, ATP binding;P:unknown;C:unknown;BOFPMAO.I.H.G.
At2g29690817519ASA2 (ANTHRANILATE SYNTHASE 2)Encode a functional anthranilate synthase protein. Expressed at a constitutive basal level. Expression was not induced by wounding nor bacterial pathogen infiltration. Involved in aromatic amino acid biosynthesis.O.I.H.G.
At2g30970817648ASP1 (ASPARTATE AMINOTRANSFERASE 1)ASPARTATE AMINOTRANSFERASE 1O.I.H.G.
At2g453008191383-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthaseencodes 3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase involved in chorismate biosynthesisO.I.H.G.
At3g06350819809MEE32 (MATERNAL EFFECT EMBRYO ARREST 32)F:NADP or NADPH binding, 3-dehydroquinate dehydratase activity, shikimate 5-dehydrogenase activity, binding, catalytic activity;P:embryonic development ending in seed dormancy;C:chloroplast stroma, chloroplast;BOAFPO.I.H.G.
At3g29200822573CM1 (CHORISMATE MUTASE 1)L-ascorbate peroxidaseO.I.H.G.
At3g54640824629TSA1 (TRYPTOPHAN SYNTHASE ALPHA CHAIN)Catalyzes the conversion of indole-3-glycerolphosphate to indole, the penultimate reaction in the biosynthesis of tryptophan. Functions as a heterocomplex with tryptophan synthase beta subunit (TSA2).O.I.H.G.
At3g55870824753anthranilate synthase, alpha subunit, putativeF:oxo-acid-lyase activity, anthranilate synthase activity;P:tryptophan biosynthetic process, biosynthetic process;C:endomembrane system;BOFAPMO.I.H.G.
At4g02610828226tryptophan synthase, alpha subunit, putativeF:tryptophan synthase activity;P:tryptophan biosynthetic process;C:chloroplast;BOAFPMO.I.H.G.
At4g27070828815TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2)Tryptophan synthase beta. Expressed at low levels in all tissues.O.I.H.G.
At4g31990829330ASP5 (ASPARTATE AMINOTRANSFERASE 5)encodes a plastid-localized aspartate aminotransferaseO.I.H.G.
At4g33510829489DHS2 (3-deoxy-d-arabino-heptulosonate 7-phosphate synthase)Enzyme catalyzing the first committed step in aromatic amino acid biosynthesisO.I.H.G.
At4g39540830108shikimate kinase family proteinF:shikimate kinase activity, ATP binding;P:aromatic amino acid family biosynthetic process;C:unknown;BOPFMAO.I.H.G.
At4g39980830159DHS1 (3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE 1)Encodes a 2-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase, which catalyzes the first committed step in aromatic amino acid biosynthesis. Gene expression is induced by wounding and pathogenic bacteria Pseudomonas syringae.O.I.H.G.
At5g05590830442PAI2 (PHOSPHORIBOSYLANTHRANILATE ISOMERASE 2)Encodes phosphoribosylanthranilate isomerase which catalyzes the third step in the tryptophan biosynthetic pathway.O.I.H.G.
At5g05730830457ASA1 (ANTHRANILATE SYNTHASE ALPHA SUBUNIT 1)ASA1 encodes the alpha subunit of anthranilate synthase, which catalyzes the rate-limiting step of tryptophan synthesis. ASA1 is induced by ethylene, and forms a link between ethylene signalling and auxin synthesis in roots.O.I.H.G.
At5g10870830954ATCM2 (chorismate mutase 2)Encodes chorismate mutase AtCM2.O.I.H.G.
At5g11520831024ASP3 (ASPARTATE AMINOTRANSFERASE 3)Encodes the chloroplastic isozyme of aspartate aminotransferase. Involved in aspartate biosynthesis and nitrogen metabolism. mRNA is expressed in senescing leaves.O.I.H.G.
At5g17990831666TRP1 (tryptophan biosynthesis 1)Encodes the tryptophan biosynthetic enzyme phosphoribosylanthranilate transferase (PAT1, called trpD in bacteria). Converts anthranilate and phosphoribosylpyrophosphate into phosphoribosylanthranilate and inorganic pyrophosphate.O.I.H.G.
At5g19550832075ASP2 (ASPARTATE AMINOTRANSFERASE 2)Nitrogen metabolism. Major cytosolic isoenzyme controlling aspartate biosynthesis in the light.O.I.H.G.
At5g282372746023tryptophan synthase, beta subunit, putativeF:pyridoxal phosphate binding, tryptophan synthase activity, catalytic activity;P:tryptophan biosynthetic process, metabolic process, tryptophan metabolic process;C:unknown;BOAFPMO.I.H.G.
At5g36160833613aminotransferase-relatedF:1-aminocyclopropane-1-carboxylate synthase activity, pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, transaminase activity, catalytic activity;P:tyrosine catabolic process to phosphoenolpyruvate, cellular amino acid and derivative metabolic process, biosynthetic process;C:cellular_component unknown;BOPMAFO.I.H.G.
At5g38530833841tryptophan synthase-relatedF:pyridoxal phosphate binding, tryptophan synthase activity, catalytic activity;P:tryptophan biosynthetic process, metabolic process;C:unknown;BOAFPMO.I.H.G.
At5g48220834875indole-3-glycerol phosphate synthase, putativeF:indole-3-glycerol-phosphate synthase activity, catalytic activity;P:metabolic process, tryptophan metabolic process;C:chloroplast, chloroplast stroma;BOAFPO.I.H.G.
At5g53970835480aminotransferase, putativeencodes tyrosine aminotransferase which is strongly induced upon aging and coronatine treatmentO.I.H.G.
At5g54810835571TSB1 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 1)A.thaliana tryptophan synthase beta subunit (trpB)O.I.H.G.
At5g57890835900anthranilate synthase beta subunit, putativeF:anthranilate synthase activity;P:tryptophan biosynthetic process, response to bacterium;C:unknown;BOFMAPO.I.H.G.
At5g661208367443-dehydroquinate synthase, putativeF:3-dehydroquinate synthase activity, carbon-oxygen lyase activity, acting on phosphates;P:aromatic amino acid family biosynthetic process, biosynthetic process;C:chloroplast;OBFAPMVO.I.H.G.

Comparison with co-expressed genes



Back to the CoP portal site

Back to the KAGIANA project homepage