Biological process to genes

Query process ID GO:0045165
Process name The commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field.
Organism Arabidopsis thaliana

Click Gene ID to show a list of co-expressed genes.

ECC Gene ID Repr. ID Gene name Functional description O.I. H.G. Other DB
XAt2g45190819127AFO (ABNORMAL FLORAL ORGANS)Encodes a member of the YABBY family of transcriptional regulators that is involved in abaxial cell type specification in leaves and fruits. YAB1 acts in a non-cell autonomous fashion within the meristem to affect phyllotactic patterning. The non-autonomous effect on the central region of the meristem is mediated through the activity if Lateral Suppressor (LAS).O.I.H.G.
XAt4g08150826364KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA)A member of class I knotted1-like homeobox gene family (together with KNAT2). Similar to the knotted1 (kn1) homeobox gene of maize. Normally expressed in the peripheral and rib zone of shoot apical meristem but not in the leaf primordia. It is also expressed in the fourth floral whorl, in the region that would become style, particularly in the cell surrounding the transmitting tissue. No expression was detected in the first three floral whorls. Expression is repressed by auxin and AS1 which results in the promotion of leaf fate.O.I.H.G.
XAt5g14750831327ATMYB66 (MYB DOMAIN PROTEIN 66)Encodes a MyB-related protein containing R2 and R3 repeats, involved in root and hypocotyl epidermal cell fate determination. Loss of function mutations make extra root hairs. Nuclear localized protein is a positive regulator for expression of CAPRICE (CPC).O.I.H.G.
XAt5g24520832523TTG1 (TRANSPARENT TESTA GLABRA 1)Required for the accumulation of purple anthocyanins in leaves and stems. Involved in trichome and root hair development. Controls epidermal cell fate specification. Affects dihydroflavonol 4-reductase gene expression. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. Based on clonal analysis and other methonds TTG1 has been shown to act non-cell autonomously and to move via plasmodesmata between cells.Localization and levels of TTG1 affect patterning of leaf trichomes.O.I.H.G.



The upper GO terms

Process ID Gene number Process name
GO:003015426The process whereby relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate.
GO:00488690A biological process whose specific outcome is the progression of a cell over time from an initial condition to a later condition.



The lower GO terms

Process ID Gene number Process name
GO:00017088The process involved in the specification of cell identity. Once specification has taken place, a cell will be committed to differentiate down a specific pathway if left in its normal environment.
GO:00017093Process involved in cell fate commitment. Once determination has taken place, a cell becomes committed to differentiate down a particular pathway regardless of its environment.
GO:00018270The cell fate commitment of precursor cells that will become inner cell mass cells.
GO:00018300The cell fate commitment of precursor cells that will become trophectoderm cells.
GO:00020510The commitment of mesenchymal cells to the specific cell fate of an osteoblast. An osteoblast is a bone-forming cell which secretes an extracellular matrix. Hydroxyapatite crystals are then deposited into the matrix to form bone.
GO:00023260The process whereby a lymphoid progenitor cell becomes committed to become any type of B cell.
GO:00023600The process by which a lymphoid progenitor cell becomes committed to becoming any type of T cell.
GO:00026800The process by which a lymphoid progenitor cell becomes committed to becoming a pro-T cell.
GO:00074450Allocation of embryonic cells to the imaginal disc founder populations, groups of cells that are committed to contribute to the formation of an imaginal disc compartment.
GO:00103770The process whereby the developmental fate of a cell becomes restricted such that it will develop into a stomatal guard cell. Guard cells are located in the leaf epidermis and pairwise surround stomatal pores, which allow CO2 influx for photosynthetic carbon fixation and water loss via transpiration to the atmosphere.
GO:00106541The process whereby the developmental fate of a cell becomes restricted such that it will develop into an apical cell. The apical cell is the upper cell formed after the first division of the zygote.
GO:00140300The process by which a cell becomes committed to become a mesenchymal cell.
GO:00140340The process by which a cell becomes committed to become a neural crest cell.
GO:00148130The process whereby the developmental fate of a cell becomes restricted such that it will develop into a satellite cell.
GO:00217810The process whereby the developmental fate of a cell becomes restricted such that it will develop into a glial cell.
GO:00218870The process whereby the developmental fate of a cell becomes restricted such that it will develop into a hypothalamus neuron that releases gonadotrophin-releasing hormone.
GO:00350270The commitment of cells to leading edge cell fate and their capacity to differentiate into leading edge cells. Leading edge cells are found at the front of a migrating epithelial sheet.
GO:00426760The process whereby the cone cells of the compound eye, the lens-secreting cells in the ommatidia, adopt pathways of differentiation that lead to the establishment of their distinct cell type.
GO:00426930The process by which the cellular identity of muscle cells is acquired and determined.
GO:00486000The process whereby the developmental fate of a cell becomes restricted such that it will develop into an oocyte.
GO:00486250The process whereby the developmental fate of a cell becomes restricted such that it will develop into a myoblast cell. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers.
GO:00486630The process whereby the developmental fate of a cell becomes restricted such that it will develop into a neuron.
GO:00488650The process whereby the developmental fate of a cell becomes restricted such that it will develop into a stem cell.
GO:00550590The process resulting in the physical partitioning and separation of a neuroblast into two daughter cells with different developmental potentials.
GO:00600100The process by which the cellular identity of Sertoli cells is acquired and determined.
GO:00600150The cell fate commitment of precursor cells that will become granulosa cells.
GO:00605810The commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells within a field of cells that will exhibit a certain pattern of differentiation. Positional information is established through protein signals that emanate from a localized source within a developmental field resulting in specification of a cell type. Those signals are then interpreted in a cell-autonomous manner resulting in the determination of the cell type.
GO:00607950The commitment of cells to specific cell fates of the endoderm, ectoderm and mesoderm as a part of gastrulation.
GO:00608390The commitment of a cell to an endothelial cell fate and its capacity to differentiate into an endothelial cell.
GO:00608980The commitment of neurectodermal cells to cells of the eye field and their capacity to differentiate into eye field cells. Eye field cells are neurectodermal cells that will form the optic placode.
GO:00609110The commitment of cells to specific cardiac cell fates and their capacity to differentiate into cardiac cells. Cardiac cells are cells that comprise the organ which pumps blood through the circulatory system.
GO:00703080The process whereby the developmental fate of a cell becomes restricted such that it will develop into a lens fiber cell. A lens fiber cell is any of the elongated, tightly packed cells that make up the bulk of the mature lens in a camera-type eye.





Comparison with co-expressed genes



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