Biological process to genes

Query process ID GO:0042546
Process name The process by which a cell wall is synthesized, aggregates, and bonds together. A cell wall is the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis.
Organism Arabidopsis thaliana

Click Gene ID to show a list of co-expressed genes.

ECC Gene ID Repr. ID Gene name Functional description O.I. H.G. Other DB
XAt1g64440842752RHD1 (ROOT HAIR DEFECTIVE 1)Encodes a protein with UDP-D-glucose 4-epimerase activity. Mutants in RHD1 have abnormally shaped root hairs with a bulbous region at the base. Allelic to REB1 encoding a UDP-D-glucose 4-epimerase involved in cell wall biosynthesis.Involved in growth and cell wall carbohydrate biosynthesis.O.I.H.G.
XAt3g19770821514VPS9AGuanine nucleotide exchange factor VPS9a. Can ctivate all Rab5 members to GTP-bound forms in vitro. Required for embryogenesis. Regulates the localization of ARA7 and ARA6. Involved in postembryonic root development.O.I.H.G.
XAt4g23920828492UGE2 (UDP-D-glucose/UDP-D-galactose 4-epimerase 2)Encodes a protein with UDP-D-glucose 4-epimerase activity. Involved in growth and cell wall carbohydrate biosynthesis.O.I.H.G.
SAt3g44990823634XTR8 (XYLOGLUCAN ENDO-TRANSGLYCOSYLASE-RELATED 8)xyloglucan endo-transglycosylaseO.I.H.G.
LAt1g14070837967FUT7member of Xyloglucan fucosyltransferase familyO.I.H.G.
LAt1g14080837968FUT6 (FUCOSYLTRANSFERASE 6)member of Xyloglucan fucosyltransferase familyO.I.H.G.
LAt1g141005007694FUT8 (FUCOSYLTRANSFERASE 8)member of Glycosyltransferase Family- 37. FUT8 was previously associated to AT1G14110O.I.H.G.
LAt1g14110837970FUT9 (FUCOSYLTRANSFERASE 9)member of xyloglucan fucosyltransferase familyO.I.H.G.
LAt1g74420843783FUT3 (FUCOSYLTRANSFERASE 3)Predicted fucosyltransferase, based on similarity to FUT1, but not functionally redundantwith FUT1.O.I.H.G.
LAt2g03210814850FUT2 (FUCOSYLTRANSFERASE 2)member of Glycosyltransferase Family- 37O.I.H.G.
LAt2g15350816027FUT10 (FUCOSYLTRANSFERASE 10)member of Glycosyltransferase Family- 37O.I.H.G.
LAt2g15360816028galactoside 2-alpha-L-fucosyltransferaseF:galactoside 2-alpha-L-fucosyltransferase activity;P:cell wall biogenesis;C:membrane;PO.I.H.G.
LAt2g15370816029FUT5Predicted fucosyltransferase, based on similarity to FUT1, but not functionally redundant with FUT1.O.I.H.G.
LAt2g15390816031FUT4Predicted fucosyltransferase, based on similarity to FUT1, but not functionally redundant with FUT1.O.I.H.G.
NAt1g02730839467ATCSLD5Encodes a gene similar to cellulose synthase. Knock-out mutant has reduced growth, reduced xylan level and reduced xylan synthase activity in stems.O.I.H.G.



The upper GO terms

Process ID Gene number Process name
GO:00440850The process by which a cellular component is synthesized, aggregates, and bonds together.
GO:00708820A cellular process that results in the biosynthesis of constituent macromolecules, assembly, arrangement of constituent parts, or disassembly of a cell wall.



The lower GO terms

Process ID Gene number Process name
GO:00001960Cascade of at least three protein kinase activities culminating in the phosphorylation and activation of a MAP kinase that occurs during cell wall biogenesis, the assembly and arrangement of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells.
GO:00092720The process by which a fungal-type cell wall is synthesized, aggregates, and bonds together. The fungal-type cell wall contains beta-glucan and may contain chitin.
GO:00092730The chemical reactions and pathways resulting in the formation of the peptidoglycan-based cell wall. An example of this process is found in Escherichia coli.
GO:000983227The chemical reactions and pathways resulting in the formation of the cellulose and pectin-containing cell wall. An example of this is found in Arabidopsis thaliana.
GO:00440380The chemical reactions and pathways resulting in the formation of a macromolecule destined to form part of a cell wall.
GO:00705900The process by which a spore wall is synthesized, aggregates, and bonds together. A spore wall is the specialized cell wall lying outside the cell membrane of a spore.
GO:00707260The aggregation, arrangement and bonding together of a cell wall. A cell wall is a rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, and most prokaryotic cells.





Comparison with co-expressed genes



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