CoP: Co-expressed Biological Processes

Biological process to genes

Query process ID GO:0042546

Process name The process by which a cell wall is synthesized, aggregates, and bonds together. A cell wall is the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis.

Organism Arabidopsis thaliana

Click Gene ID to show a list of co-expressed genes.

ECC Gene ID Repr. ID Gene name Functional description O.I. H.G. Other DB
X At1g64440 842752 RHD1 (ROOT HAIR DEFECTIVE 1) Encodes a protein with UDP-D-glucose 4-epimerase activity. Mutants in RHD1 have abnormally shaped root hairs with a bulbous region at the base. Allelic to REB1 encoding a UDP-D-glucose 4-epimerase involved in cell wall biosynthesis.Involved in growth and cell wall carbohydrate biosynthesis. O.I. H.G.
X At3g19770 821514 VPS9A Guanine nucleotide exchange factor VPS9a. Can ctivate all Rab5 members to GTP-bound forms in vitro. Required for embryogenesis. Regulates the localization of ARA7 and ARA6. Involved in postembryonic root development. O.I. H.G.
X At4g23920 828492 UGE2 (UDP-D-glucose/UDP-D-galactose 4-epimerase 2) Encodes a protein with UDP-D-glucose 4-epimerase activity. Involved in growth and cell wall carbohydrate biosynthesis. O.I. H.G.
S At3g44990 823634 XTR8 (XYLOGLUCAN ENDO-TRANSGLYCOSYLASE-RELATED 8) xyloglucan endo-transglycosylase O.I. H.G.
L At1g14070 837967 FUT7 member of Xyloglucan fucosyltransferase family O.I. H.G.
L At1g14080 837968 FUT6 (FUCOSYLTRANSFERASE 6) member of Xyloglucan fucosyltransferase family O.I. H.G.
L At1g14100 5007694 FUT8 (FUCOSYLTRANSFERASE 8) member of Glycosyltransferase Family- 37. FUT8 was previously associated to AT1G14110 O.I. H.G.
L At1g14110 837970 FUT9 (FUCOSYLTRANSFERASE 9) member of xyloglucan fucosyltransferase family O.I. H.G.
L At1g74420 843783 FUT3 (FUCOSYLTRANSFERASE 3) Predicted fucosyltransferase, based on similarity to FUT1, but not functionally redundantwith FUT1. O.I. H.G.
L At2g03210 814850 FUT2 (FUCOSYLTRANSFERASE 2) member of Glycosyltransferase Family- 37 O.I. H.G.
L At2g15350 816027 FUT10 (FUCOSYLTRANSFERASE 10) member of Glycosyltransferase Family- 37 O.I. H.G.
L At2g15360 816028 galactoside 2-alpha-L-fucosyltransferase F:galactoside 2-alpha-L-fucosyltransferase activity;P:cell wall biogenesis;C:membrane;P O.I. H.G.
L At2g15370 816029 FUT5 Predicted fucosyltransferase, based on similarity to FUT1, but not functionally redundant with FUT1. O.I. H.G.
L At2g15390 816031 FUT4 Predicted fucosyltransferase, based on similarity to FUT1, but not functionally redundant with FUT1. O.I. H.G.
N At1g02730 839467 ATCSLD5 Encodes a gene similar to cellulose synthase. Knock-out mutant has reduced growth, reduced xylan level and reduced xylan synthase activity in stems. O.I. H.G.

The upper GO terms

Process ID Gene number Process name
GO:0044085 0 The process by which a cellular component is synthesized, aggregates, and bonds together.
GO:0070882 0 A cellular process that results in the biosynthesis of constituent macromolecules, assembly, arrangement of constituent parts, or disassembly of a cell wall.

The lower GO terms

Process ID Gene number Process name
GO:0000196 0 Cascade of at least three protein kinase activities culminating in the phosphorylation and activation of a MAP kinase that occurs during cell wall biogenesis, the assembly and arrangement of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells.
GO:0009272 0 The process by which a fungal-type cell wall is synthesized, aggregates, and bonds together. The fungal-type cell wall contains beta-glucan and may contain chitin.
GO:0009273 0 The chemical reactions and pathways resulting in the formation of the peptidoglycan-based cell wall. An example of this process is found in Escherichia coli.
GO:0009832 27 The chemical reactions and pathways resulting in the formation of the cellulose and pectin-containing cell wall. An example of this is found in Arabidopsis thaliana.
GO:0044038 0 The chemical reactions and pathways resulting in the formation of a macromolecule destined to form part of a cell wall.
GO:0070590 0 The process by which a spore wall is synthesized, aggregates, and bonds together. A spore wall is the specialized cell wall lying outside the cell membrane of a spore.
GO:0070726 0 The aggregation, arrangement and bonding together of a cell wall. A cell wall is a rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, and most prokaryotic cells.

Comparison with co-expressed genes

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