Biological process to genes

Query process ID GO:0031347
Process name Any process that modulates the frequency, rate or extent of a defense response.
Organism Arabidopsis thaliana

Click Gene ID to show a list of co-expressed genes.

ECC Gene ID Repr. ID Gene name Functional description O.I. H.G. Other DB
XAt1g80840844423WRKY40Pathogen-induced transcription factor. Binds W-box sequences in vitro. Forms protein complexes with itself and with WRKY40 and WRKY60. Coexpression with WRKY18 or WRKY60 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two.O.I.H.G.
XAt2g18790816394PHYB (PHYTOCHROME B)Red/far-red photoreceptor involved in the regulation of de-etiolation. Exists in two inter-convertible forms: Pr and Pfr (active). Involved in the light-promotion of seed germination and in the shade avoidance response.O.I.H.G.
XAt2g18950816412HPT1 (HOMOGENTISATE PHYTYLTRANSFERASE 1)Encodes homogentisate phytyltransferase involved in tocopherol biosynthesis. Has impact on seed longevity and plays a role in the adaptation to low temperature stress, notably phloem loading.O.I.H.G.
XAt2g25000817039WRKY60Pathogen-induced transcription factor. Forms protein complexes with itself and with WRKY40. Coexpression with WRKY18 or WRKY40 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two.O.I.H.G.
XAt2g40750818670WRKY54member of WRKY Transcription Factor; Group IIIO.I.H.G.
XAt3g01080821213WRKY58member of WRKY Transcription Factor; Group IO.I.H.G.
XAt3g56400824807WRKY70member of WRKY Transcription Factor; Group III. Function as activator of SA-dependent defense genes and a repressor of JA-regulated genes. WRKY70-controlled suppression of JA-signaling is partly executed by NPR1.O.I.H.G.
XAt4g23810828481WRKY53member of WRKY Transcription Factor; Group IIIO.I.H.G.
XAt4g31800829308WRKY18Pathogen-induced transcription factor. Binds W-box sequences in vitro. Forms protein complexes with itself and with WRKY40 and WRKY60. Constitutive expression of WRKY18 enhanced resistance to P. syringae, but its coexpression with WRKY40 or WRKY60 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two.O.I.H.G.
XAt4g32770829413VTE1 (VITAMIN E DEFICIENT 1)Tocopherol cyclase involved in tocopherol (vitamin E)synthesis. VTE1 over-expressing plants have increased tocopherol indicating VTE1 is a major limiting factor in tocopherol synthesis. Mutants defective in this gene accumulate high amounts of zeaxanthin in conditions of high light or low temperature. Plays a role in the adaptation to low temperature stress, notably phloem loading.O.I.H.G.



The upper GO terms

Process ID Gene number Process name
GO:00801341Any process that modulates the frequency, rate or extent of a response to stress. Response to stress is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).



The lower GO terms

Process ID Gene number Process name
GO:00027860Any process that modulates the frequency, rate, or extent of antibacterial peptide production.
GO:00027880Any process that modulates the frequency, rate, or extent of antifungal peptide production.
GO:00101850Any process that modulates the frequency, rate or extent of cellular defense response.
GO:003134814Any process that stops, prevents or reduces the frequency, rate or extent of a defense response.
GO:00313490Any process that activates or increases the frequency, rate or extent of a defense response.
GO:00450881Any process that modulates the frequency, rate or extent of the innate immune response, the organism's first line of defense against infection.
GO:00506880Any process that modulates the frequency, rate or extent of the antiviral response of a cell or organism.
GO:00507270Any process that modulates the frequency, rate or extent of the inflammatory response, the immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents.
GO:00522550Any process by which an organism modulates the frequency, rate or extent of the defense response of a second organism, the response mounted by that organism in response to the presence of the first organism, where the two organisms are in a symbiotic interaction.
GO:00709500Any process that modulates the rate, frequency or extent of neutrophil mediated killing of a bacterium, the directed killing of a bacterium by a neutrophil.
GO:00709530Any process that modulates the rate, frequency or extent of neutrophil mediated killing of a fungal cell, the directed killing of a fungal cell by a neutrophil.





Comparison with co-expressed genes



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