Biological process to genes

Query process ID GO:0030036
Process name A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins.
Organism Arabidopsis thaliana

Click Gene ID to show a list of co-expressed genes.

ECC Gene ID Repr. ID Gene name Functional description O.I. H.G. Other DB
XAt1g42550840860PMI1 (PLASTID MOVEMENT IMPAIRED1)Encodes a plant-specific protein of unknown function that appears to be conserved among angiosperms.O.I.H.G.
XAt2g38440818425SCAR2 (SCAR HOMOLOG 2)Encodes a subunit of the WAVE complex. The WAVE complex is required for activation of ARP2/3 complex which functions in actin microfilament nucleation and branching. Mutations cause defects in both the actin and microtubule cytoskeletons that result in aberrant epidermal cell expansion. itb1 mutants showed irregularities in trichome branch positioning and expansion. The SHD domain of this protein binds to BRK1 and overexpression of the SHD domain results in a dominant negative phenotype.O.I.H.G.
XAt3g13870820600RHD3 (ROOT HAIR DEFECTIVE 3)required for regulated cell expansion and normal root hair development. Encodes an evolutionarily conserved protein with putative GTP-binding motifs that is implicated in the control of vesicle trafficking between the endoplasmic reticulum and the Golgi compartments.O.I.H.G.
XAt3g25500822136AFH1 (FORMIN HOMOLOGY 1)Poly-L-proline-containing (PLP) protein that form part of the signal-transduction cascade that leads to rearrangement of the actin cytoskeleton. AFH1 is a nonprocessive formin that moves from the barbered end to the side of an actin filament after the nucleation event.O.I.H.G.
XAt4g01710828087CRK (CROOKED)belongs to the DIS(distorted) gene family. Encodes a actin polymerization factor. Involved in cell expansion of trichome.O.I.H.G.
XAt4g34940829646ARO1 (ARMADILLO REPEAT ONLY 1)Armadillo repeat protein. One of a family of four in Arabidopsis. Located in the nucleus and cytoplasm of pollen vegetative cells, and in the cytoplasm of egg cells. Involved in the signaling network controlling tip growth and actin organization in the pollen tube.O.I.H.G.
XAt5g18410831959PIR121distorted trichomes and exhibits a diffuse actin cytoskeletonO.I.H.G.
SAt2g19770816496PRF5 (PROFILIN5)Encodes profilin 5, originally named profilin 4 (PRO4/PFN4). Low-molecular weight, actin monomer-binding protein that regulates the organization of actin cytoskeleton. Pollen-specific plant profilin present predominantly in mature pollen and growing pollen tubes.O.I.H.G.
SAt3g12110820385ACT11 (actin-11)Encodes an actin that is expressed predominantly during reproductive development.O.I.H.G.
SAt3g27000822317ARP2 (ACTIN RELATED PROTEIN 2)encodes a protein whose sequence is similar to actin-related proteins (ARPs) in other organisms. its transcript level is down regulated by light and is expressed in very low levels in all organs examined.O.I.H.G.
SAt4g34490829600ATCAP1 (ARABIDOPSIS THALIANA CYCLASE ASSOCIATED PROTEIN 1)CYCLASE ASSOCIATED PROTEINO.I.H.G.
SAt5g59370836056ACT4 (ACTIN 4)Encodes one of eight Arabidopsis actins. ACT4 belongs to the reproductive actin subclass which is predominantly expressed in developing and reproductive tissues, such as pollen, pollen tubes, ovules, and developing seeds. Expression of the ACT4/GUS fusion was restricted to young vascular tissues, tapetum, and developing and mature pollen.O.I.H.G.
CAt1g71790843509F-actin capping protein beta subunit family proteinF:actin binding;P:actin cytoskeleton organization;C:F-actin capping protein complex, cytoplasm;MFOPO.I.H.G.
CAt3g05520819717F-actin capping protein alpha subunit family proteinF:actin binding;P:actin cytoskeleton organization;C:nucleus, F-actin capping protein complex;MFOPO.I.H.G.
LAt1g31810840068actin bindingF:actin binding;P:cellular component organization, actin cytoskeleton organization;C:unknown;MFBOPVAO.I.H.G.
LAt1g59910842285formin homology 2 domain-containing protein / FH2 domain-containing proteinF:actin binding;P:cellular component organization, actin cytoskeleton organization;C:plasma membrane;MBOFPVAO.I.H.G.
LAt2g25050817043formin homology 2 domain-containing protein / FH2 domain-containing proteinF:actin binding;P:cellular component organization, actin cytoskeleton organization;C:unknown;MFOPBVAO.I.H.G.
LAt2g43800818984formin homology 2 domain-containing protein / FH2 domain-containing proteinF:actin binding;P:cellular component organization, actin cytoskeleton organization;C:plasma membrane;MPFOBVAO.I.H.G.
LAt3g05470819712formin homology 2 domain-containing protein / FH2 domain-containing proteinF:actin binding;P:cellular component organization, actin cytoskeleton organization;C:endomembrane system;MPOFVBAO.I.H.G.
LAt3g07540819943formin homology 2 domain-containing protein / FH2 domain-containing proteinF:actin binding;P:cellular component organization, actin cytoskeleton organization;C:plasma membrane;MOPFBVO.I.H.G.
LAt3g32400823026formin homology 2 domain-containing protein / FH2 domain-containing proteinF:actin binding;P:cellular component organization, actin cytoskeleton organization;C:unknown;MPOFVBAO.I.H.G.
LAt4g15200827184actin bindingF:actin binding;P:cellular component organization, actin cytoskeleton organization;C:endomembrane system;MPBOFVAO.I.H.G.
LAt4g29340829055PRF4 (PROFILIN 4)Profilin is a low-molecular weight, actin monomer-binding protein that regulates the organization of actin cytoskeleton in eukaryotes, including higher plants. PRF4 and PRF5 are late pollen-specific and are not detectable in other cell types of the plant body including microspores and root hairs. Immunocytochemical studies at the subcellular level reveal that both the constitutive and pollen-specific profilins are abundant in the cytoplasm. In vegetative cell types, such as root apical cells, profilins showed localization to nuclei in addition to the cytoplasmic staining.O.I.H.G.
LAt5g07650830658formin homology 2 domain-containing protein / FH2 domain-containing proteinF:actin binding;P:cellular component organization, actin cytoskeleton organization;C:chloroplast;MOPFBAO.I.H.G.
LAt5g07760830669formin homology 2 domain-containing protein / FH2 domain-containing proteinF:actin binding;P:cellular component organization, actin cytoskeleton organization;C:chloroplast;MPBOFVAO.I.H.G.
LAt5g07780830671formin homology 2 domain-containing protein / FH2 domain-containing proteinF:actin binding;P:cellular component organization, actin cytoskeleton organization;C:chloroplast;MPOBFVAO.I.H.G.
LAt5g48360834889formin homology 2 domain-containing protein / FH2 domain-containing proteinF:actin binding;P:cellular component organization, actin cytoskeleton organization;C:unknown;MPOFVBAO.I.H.G.
LAt5g56600835761PRF3 (PROFILIN 3)Encodes profilin3, a low-molecular weight, actin monomer-binding protein that regulates the organization of actin cytoskeleton. Originally known as profilin5, and later named profilin3. Expressed in vegetative organs.O.I.H.G.
LAt5g58160835928actin bindingF:actin binding;P:cellular component organization, actin cytoskeleton organization;C:unknown;MBFOPVAO.I.H.G.
LAt5g67470836883formin homology 2 domain-containing protein / FH2 domain-containing proteinF:actin binding;P:cellular component organization, actin cytoskeleton organization;C:in 7 components;MPOFBVAO.I.H.G.



The upper GO terms

Process ID Gene number Process name
GO:000701022A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures.
GO:00300294Any cellular process that depends upon or alters the actin cytoskeleton, that part of the cytoskeleton comprising actin filaments and their associated proteins.



The lower GO terms

Process ID Gene number Process name
GO:000701512A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments. Includes processes that control the spatial distribution of actin filaments, such as organizing filaments into meshworks, bundles, or other structures, as by cross-linking.
GO:00218180The changes in the actin cytoskeleton that are necessary for the movement of cells along radial glial cells as a component of the process of cerebral cortex glial-mediated radial cell migration.
GO:00300470Covalent modification of an actin molecule.
GO:00308660A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of actin-based cytoskeletal structures in the cell cortex, i.e. just beneath the plasma membrane.
GO:00309500Any cellular process that results in the specification, formation or maintenance of polarized actin-based cytoskeletal structures.
GO:00310320A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures containing both actin and myosin. The myosin may be organized into filaments.
GO:00310330The formation or disassembly of a filament composed of myosin molecules.
GO:00315320A process that is carried out at the cellular level which results in dynamic structural changes to the arrangement of constituent parts of cytoskeletal structures comprising actin filaments and their associated proteins.
GO:00321870The process by which a contractile ring is assembled and/or maintained in a specific location, in the context of cytokinesis that takes place as part of a cell cycle.
GO:00706500Any cellular process that establishes the spatial arrangement of actin filament bundles within the cell.





Comparison with co-expressed genes



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