CoP: Co-expressed Biological Processes

Biological process to genes

Query process ID GO:0016070

Process name The chemical reactions and pathways involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage.

Organism Arabidopsis thaliana

Click Gene ID to show a list of co-expressed genes.

ECC Gene ID Repr. ID Gene name Functional description O.I. H.G. Other DB
X At4g14790 827134 ATSUV3 encodes a nuclear-encoded DExH box RNA helicase, which is localized to mitochondria and whose in vitro ATPase activity is stimulated with mitochondrial RNA. O.I. H.G.
S At2g06990 815269 HEN2 (hua enhancer 2) encodes a putative DExH-box RNA helicase that acts redundantly with HEN1, HUA1, and HUA2 in the specification of floral organ identity in the third whorl. O.I. H.G.
S At5g44200 834443 CBP20 (CAP-BINDING PROTEIN 20) Encodes a nuclear cap-binding protein that forms a heterodimeric complex with ABH1 (ATCBP80) and is likely to participate in RNA metabolism. Its mRNA is ubiquitously expressed.Loss of function mutations suggest a role in processing of pri-miRNA and mRNA splicing. O.I. H.G.
S At5g62190 836340 PRH75 DEAD/DEAH box RNA helicase PRH75 O.I. H.G.
L At1g56030 842054 MIF4G domain-containing protein / U-box domain-containing protein F:ubiquitin-protein ligase activity, protein binding, RNA binding;P:translation, RNA metabolic process, protein ubiquitination;C:ubiquitin ligase complex;PMOBFAV O.I. H.G.
L At1g56040 842055 binding / protein binding / ubiquitin-protein ligase F:ubiquitin-protein ligase activity, protein binding, binding;P:RNA metabolic process, protein ubiquitination;C:ubiquitin ligase complex;MOBFPAV O.I. H.G.
L At1g62410 842539 MIF4G domain-containing protein F:translation initiation factor activity;P:translation, RNA metabolic process;C:endomembrane system;MOFP O.I. H.G.
L At1g80930 844433 MIF4G domain-containing protein / MA3 domain-containing protein F:protein binding, RNA binding, binding;P:translation, RNA metabolic process;C:cytosol, nucleus;MOFBPVA O.I. H.G.
L At2g24050 816939 MIF4G domain-containing protein / MA3 domain-containing protein F:protein binding, RNA binding, binding;P:translation, RNA metabolic process;C:unknown;MPOFBV O.I. H.G.
L At2g25100 817048 ribonuclease HII family protein F:ribonuclease H activity, RNA binding, catalytic activity, nucleic acid binding;P:RNA metabolic process;C:unknown;BOAMFPV O.I. H.G.
L At2g39260 818511 RNA binding / binding / protein binding F:protein binding, RNA binding, binding;P:translation, RNA metabolic process;C:cellular_component unknown;MOFBPVA O.I. H.G.
L At3g16230 820869 RNA binding / catalytic F:RNA binding, catalytic activity;P:RNA metabolic process, regulation of transcription;C:mitochondrion;MPOF O.I. H.G.
L At3g28140 822438 calmodulin-binding protein F:calmodulin binding;P:RNA metabolic process;C:intracellular;BPO O.I. H.G.
L At4g18940 827629 cyclic phosphodiesterase, putative F:cyclic-nucleotide phosphodiesterase activity, catalytic activity;P:RNA metabolic process;C:intracellular;OPBAF O.I. H.G.
L At5g17930 831661 binding / protein binding F:protein binding, binding;P:RNA metabolic process;C:cellular_component unknown;MOFBPVA O.I. H.G.
L At5g40190 834017 calmodulin-binding protein Identified in a screen for calmodulin-binding proteins obtained from an auxin treated cDNA library. O.I. H.G.
L At5g57870 835897 eukaryotic translation initiation factor 4F, putative / eIF-4F, putative F:protein binding, RNA binding, binding, translation initiation factor activity;P:translational initiation, translation, RNA metabolic process;C:nucleus, cytoplasm;MPOFB O.I. H.G.

The upper GO terms

Process ID Gene number Process name
GO:0006139 37 The chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids.
GO:0034960 0 The chemical reactions and pathways involving biopolymers, long, repeating chains of monomers found in nature, such as polysaccharides and proteins, as carried out by individual cells.

The lower GO terms

Process ID Gene number Process name
GO:0000378 0 The process of joining two exons, each of which has free ends that were generated by endonucleolytic cleavages, by a ligation reaction.
GO:0000959 0 The chemical reactions and pathways involving RNA transcribed from the mitochondrial genome and occurring in the mitochondrion.
GO:0006354 8 The extension of an RNA molecule after transcription initiation by the addition of ribonucleotides catalyzed by an RNA polymerase.
GO:0006396 79 Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO:0006401 1 The chemical reactions and pathways resulting in the breakdown of RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage.
GO:0009451 21 The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically.
GO:0010501 2 The process by which a secondary structure of RNA are broken or 'melted'.
GO:0016071 1 The chemical reactions and pathways involving mRNA, messenger RNA, which is responsible for carrying the coded genetic 'message', transcribed from DNA, to sites of protein assembly at the ribosomes.
GO:0032774 0 The chemical reactions and pathways resulting in the formation of RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage. Includes polymerization of ribonucleotide monomers.
GO:0034337 0 The process of assisting in the covalent and noncovalent assembly of single or multimeric RNAs into the correct tertiary structure.
GO:0034660 0 The chemical reactions and pathways involving non-coding RNA transcripts (ncRNAs).
GO:0042245 0 Any process by which damaged RNA can be repaired.

Comparison with co-expressed genes

Back to the CoP portal site

Back to the KAGIANA project homepage