CoP: Co-expressed Biological Processes

Biological process to genes

Query process ID GO:0009664

Process name A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana.

Organism Arabidopsis thaliana

Click Gene ID to show a list of co-expressed genes.

ECC Gene ID Repr. ID Gene name Functional description O.I. H.G. Other DB
X At1g31420 840032 FEI1 (FEI 1) Encodes a plasma membrane localized leucine-rich repeat receptor kinase that is involved in cell wall elongation. Loss of function mutations of FEI1 and FEI2 exhibit defects in root and hypocotyl cell elongation. Double mutants are defective in cell wall biosynthesis and have thick hypocotyls, and short, thick roots. O.I. H.G.
X At2g35620 818130 FEI2 (FEI 2) Encodes a plasma membrane localized leucine-rich repeat receptor kinase that is involved in cell wall elongation. Loss of function mutations of FEI1 and FEI2 exhibit defects in root and hypocotyl cell elongation. Double mutants are defective in cell wall biosynthesis and have thick hypocotyls, and short, thick roots. O.I. H.G.
X At5g66680 836801 DGL1 Encodes a protein ortholog of human SOT48 or yeast WBP1, an essential protein subunit of the oligosaccharyltransferase (OST) complex, which is responsible for the transfer in the ER of the N-linked glycan precursor onto Asn residues of candidate proteins. O.I. H.G.
S At1g14420 838004 AT59 F:lyase activity, pectate lyase activity;P:plant-type cell wall organization;C:endomembrane system;PBFO O.I. H.G.
S At5g57560 835860 TCH4 (Touch 4) Encodes a cell wall-modifying enzyme, rapidly upregulated in response to environmental stimuli O.I. H.G.
C At2g20750 816604 ATEXPB1 (ARABIDOPSIS THALIANA EXPANSIN B1) member of BETA-EXPANSINS. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) O.I. H.G.
C At2g21140 816649 ATPRP2 (PROLINE-RICH PROTEIN 2) Proline-rich protein expressed in expanding leaves, stems, flowers, and siliques. O.I. H.G.
C At3g15370 820776 ATEXPA12 (ARABIDOPSIS THALIANA EXPANSIN 12) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) O.I. H.G.
C At3g45960 823739 ATEXLA3 (arabidopsis thaliana expansin-like a3) member of EXPANSIN-LIKE. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) O.I. H.G.
C At4g28250 828940 ATEXPB3 (ARABIDOPSIS THALIANA EXPANSIN B3) putative beta-expansin/allergen protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. O.I. H.G.
C At4g38400 829997 ATEXLA2 (ARABIDOPSIS THALIANA EXPANSIN-LIKE A2) member of EXPANSIN-LIKE. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) O.I. H.G.
L At1g21310 838728 ATEXT3 (EXTENSIN 3) Encodes extensin 3. O.I. H.G.
L At1g23720 838982 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:unknown;MBFOPVA O.I. H.G.
L At1g26240 839165 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPBOFVA O.I. H.G.
L At1g26250 839166 proline-rich extensin, putative F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPBOFVA O.I. H.G.
L At2g24980 817037 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVA O.I. H.G.
L At2g43150 818917 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPBFOVA O.I. H.G.
L At3g28550 822485 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPFBOVA O.I. H.G.
L At3g54580 824623 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFBPOVA O.I. H.G.
L At3g54590 824624 ATHRGP1 (HYDROXYPROLINE-RICH GLYCOPROTEIN) Encodes a hydroxyproline-rich glycoprotein. O.I. H.G.
L At4g08370 826393 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPFOBVA O.I. H.G.
L At4g08400 826398 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:cellular_component unknown;MFPOBVA O.I. H.G.
L At4g08410 826400 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:unknown;MFPOBVA O.I. H.G.
L At4g13390 826970 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVA O.I. H.G.
L At5g06630 830551 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVA O.I. H.G.
L At5g06640 830552 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:unknown;MFPOBVA O.I. H.G.
L At5g35190 833473 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVA O.I. H.G.

ECC	Gene ID	Repr. ID	Gene name	Functional description	O.I.	H.G.
X	At1g31420	840032	FEI1 (FEI 1)	Encodes a plasma membrane localized leucine-rich repeat receptor kinase that is involved in cell wall elongation. Loss of function mutations of FEI1 and FEI2 exhibit defects in root and hypocotyl cell elongation. Double mutants are defective in cell wall biosynthesis and have thick hypocotyls, and short, thick roots.	O.I.	H.G.
X	At2g35620	818130	FEI2 (FEI 2)	Encodes a plasma membrane localized leucine-rich repeat receptor kinase that is involved in cell wall elongation. Loss of function mutations of FEI1 and FEI2 exhibit defects in root and hypocotyl cell elongation. Double mutants are defective in cell wall biosynthesis and have thick hypocotyls, and short, thick roots.	O.I.	H.G.
X	At5g66680	836801	DGL1	Encodes a protein ortholog of human SOT48 or yeast WBP1, an essential protein subunit of the oligosaccharyltransferase (OST) complex, which is responsible for the transfer in the ER of the N-linked glycan precursor onto Asn residues of candidate proteins.	O.I.	H.G.
S	At1g14420	838004	AT59	F:lyase activity, pectate lyase activity;P:plant-type cell wall organization;C:endomembrane system;PBFO	O.I.	H.G.
S	At5g57560	835860	TCH4 (Touch 4)	Encodes a cell wall-modifying enzyme, rapidly upregulated in response to environmental stimuli	O.I.	H.G.
C	At2g20750	816604	ATEXPB1 (ARABIDOPSIS THALIANA EXPANSIN B1)	member of BETA-EXPANSINS. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	O.I.	H.G.
C	At2g21140	816649	ATPRP2 (PROLINE-RICH PROTEIN 2)	Proline-rich protein expressed in expanding leaves, stems, flowers, and siliques.	O.I.	H.G.
C	At3g15370	820776	ATEXPA12 (ARABIDOPSIS THALIANA EXPANSIN 12)	member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	O.I.	H.G.
C	At3g45960	823739	ATEXLA3 (arabidopsis thaliana expansin-like a3)	member of EXPANSIN-LIKE. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	O.I.	H.G.
C	At4g28250	828940	ATEXPB3 (ARABIDOPSIS THALIANA EXPANSIN B3)	putative beta-expansin/allergen protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.	O.I.	H.G.
C	At4g38400	829997	ATEXLA2 (ARABIDOPSIS THALIANA EXPANSIN-LIKE A2)	member of EXPANSIN-LIKE. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	O.I.	H.G.
L	At1g21310	838728	ATEXT3 (EXTENSIN 3)	Encodes extensin 3.	O.I.	H.G.
L	At1g23720	838982	proline-rich extensin-like family protein	F:structural constituent of cell wall;P:plant-type cell wall organization;C:unknown;MBFOPVA	O.I.	H.G.
L	At1g26240	839165	proline-rich extensin-like family protein	F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPBOFVA	O.I.	H.G.
L	At1g26250	839166	proline-rich extensin, putative	F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPBOFVA	O.I.	H.G.
L	At2g24980	817037	proline-rich extensin-like family protein	F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVA	O.I.	H.G.
L	At2g43150	818917	proline-rich extensin-like family protein	F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPBFOVA	O.I.	H.G.
L	At3g28550	822485	proline-rich extensin-like family protein	F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPFBOVA	O.I.	H.G.
L	At3g54580	824623	proline-rich extensin-like family protein	F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFBPOVA	O.I.	H.G.
L	At3g54590	824624	ATHRGP1 (HYDROXYPROLINE-RICH GLYCOPROTEIN)	Encodes a hydroxyproline-rich glycoprotein.	O.I.	H.G.
L	At4g08370	826393	proline-rich extensin-like family protein	F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPFOBVA	O.I.	H.G.
L	At4g08400	826398	proline-rich extensin-like family protein	F:structural constituent of cell wall;P:plant-type cell wall organization;C:cellular_component unknown;MFPOBVA	O.I.	H.G.
L	At4g08410	826400	proline-rich extensin-like family protein	F:structural constituent of cell wall;P:plant-type cell wall organization;C:unknown;MFPOBVA	O.I.	H.G.
L	At4g13390	826970	proline-rich extensin-like family protein	F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVA	O.I.	H.G.
L	At5g06630	830551	proline-rich extensin-like family protein	F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVA	O.I.	H.G.
L	At5g06640	830552	proline-rich extensin-like family protein	F:structural constituent of cell wall;P:plant-type cell wall organization;C:unknown;MFPOBVA	O.I.	H.G.
L	At5g35190	833473	proline-rich extensin-like family protein	F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVA	O.I.	H.G.

The upper GO terms

Process ID Gene number Process name
GO:0007047 5 A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis.

Process ID	Gene number	Process name
GO:0007047	5	A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis.

The lower GO terms

Process ID Gene number Process name
GO:0009827 5 The series of events leading to chemical and structural alterations of an existing cellulose and pectin-containing cell wall that can result in loosening, increased extensibility or disassembly. An example of this is found in Arabidopsis thaliana.
GO:0010215 4 Oriented deposition of cellulose microfibrils during plant cell wall biosynthesis.
GO:0052541 2 The chemical reactions and pathways involving cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation, as part of the organization and biogenesis of the cell wall.
GO:0052546 0 The chemical reactions and pathways involving pectin, a polymer containing a backbone of alpha-1,4-linked D-galacturonic acid residues, as part of the organization and biogenesis of the cell wall.

Process ID	Gene number	Process name
GO:0009827	5	The series of events leading to chemical and structural alterations of an existing cellulose and pectin-containing cell wall that can result in loosening, increased extensibility or disassembly. An example of this is found in Arabidopsis thaliana.
GO:0010215	4	Oriented deposition of cellulose microfibrils during plant cell wall biosynthesis.
GO:0052541	2	The chemical reactions and pathways involving cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation, as part of the organization and biogenesis of the cell wall.
GO:0052546	0	The chemical reactions and pathways involving pectin, a polymer containing a backbone of alpha-1,4-linked D-galacturonic acid residues, as part of the organization and biogenesis of the cell wall.

Comparison with co-expressed genes

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Query process ID	GO:0009664
Process name	A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana.
Organism	Arabidopsis thaliana