Biological process to genes

Query process ID GO:0009617
Process name A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a bacterium.
Organism Arabidopsis thaliana

Click Gene ID to show a list of co-expressed genes.

ECC Gene ID Repr. ID Gene name Functional description O.I. H.G. Other DB
XAt1g01580839411FRO2 (FERRIC REDUCTION OXIDASE 2)Encodes the low-iron-inducible ferric chelate reductase responsible for reduction of iron at the root surface. It is likely to be the major Fe(III) chelate reductase in Arabidopsis iron metabolism. Coordinately regulated with IRT1, the major transporter responsible for high-affinity iron uptake from the soil, at both transcriptional and posttranscriptional levels. Steady state mRNA levels are regulated by several metals. Its transcription is regulated by FIT1.O.I.H.G.
XAt1g08720837393EDR1 (ENHANCED DISEASE RESISTANCE 1)enhanced disease resistance 1 (EDR1) confers resistance to powdery mildew disease caused by the fungus Erysiphe cichoracearumO.I.H.G.
XAt1g25220839103ASB1 (ANTHRANILATE SYNTHASE BETA SUBUNIT 1)Catalyzes the first step of tryptophan biosynthesis: Chorismate L-Glutamine = Anthranilate Pyruvate L-Glutamate. Functions as a heterocomplex with anthranilate synthase alpha subunit (ASA1 or ASA2).O.I.H.G.
XAt1g26630839203FBR12 (FUMONISIN B1-RESISTANT12)Eukaryotic translation initiation factor 5A-2. Involved in programmed cell death triggered as a response to pseudomonas syringae infection. Loss of function mutants are more resistant to infection.O.I.H.G.
XAt1g33960840293AIG1 (AVRRPT2-INDUCED GENE 1)Identified as a gene that is induced by avirulence gene avrRpt2 and RPS2 after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2O.I.H.G.
XAt1g64280842733NPR1 (NONEXPRESSER OF PR GENES 1)This gene is a key regulator of the salicylic acid (SA)-mediated systemic acquired resistance (SAR) pathway. It is similar to the transcription factor inhibitor I kappa B, and contains ankyrin repeats. It confers resistance to the pathogens Pseudomonas syringae and Peronospora parasitica in a dosage-dependent fashion. Although transgenic Arabidopsis plants overexpressing NPR1 acquire enhanced sensitivity to SA and (benzothiadiazole) BTH, they display no obvious detrimental morphological changes and do not have elevated pathogenesis-related gene expression until activated by inducers or pathogens.O.I.H.G.
XAt1g72520843584lipoxygenase, putativeF:electron carrier activity, oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, lipoxygenase activity, iron ion binding, metal ion binding;P:growth, jasmonic acid biosynthetic process, response to wounding, defense response;C:chloroplast;PMBFOO.I.H.G.
XAt1g74710843810isochorismate synthase 1 (ICS1) / isochorismate mutaseEncodes a protein with isochorismate synthase activity. Mutants fail to accumulate salicylic acid. Its function may be redundant with that of ICS2 (AT1G18870).O.I.H.G.
XAt1g80460844385NHO1 (nonhost resistance to P. s. phaseolicola 1)Encodes a protein similar to glycerol kinase, which converts glycerol to glycerol 3-phosphate and performs a rate-limiting step in glycerol metabolism. This gene is required for both general and specific resistance against bacteria and fungi. Arabidopsis thaliana glycerol kinase (GLR1) mRNA.Involved in flagellin-induced non-host resistance to Pseudomonas. Coronatine partially suppresses flagellin-induced expression of NHO1.O.I.H.G.
XAt2g03440814873nodulin-relatedInduced at the transcriptional level by Pseudomonas syringae pv. tomato infection.O.I.H.G.
XAt2g17310816238SON1 (SUPPRESSOR OF NIM1-1 1)Encodes an F-Box protein that regulates a novel induced defense response independent of both salicylic acid and systemic acquired resistanceO.I.H.G.
XAt2g23150816847NRAMP3 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 3)Encodes a member of the Nramp2 metal transporter family; like its homolog Atnramp4, localized in vacuolar membrane. Seedlings of double mutant, atnramp3-1 atnramp4-1, were arrested at early germination.O.I.H.G.
XAt2g30750817626CYP71A12 (cytochrome P450, family 71, subfamily A, polypeptide 12)putative cytochrome P450O.I.H.G.
XAt2g30770817628CYP71A13 (cytochrome P450, family 71, subfamily A, polypeptide 13)putative cytochrome P450O.I.H.G.
XAt2g41430818741ERD15 (EARLY RESPONSIVE TO DEHYDRATION 15)Encodes hydrophilic protein lacking Cys residues that is expressed in response to drought stress, light stress and treatment with plant-growth-promoting rhizobacteria (Paenibacillus polymyxa), possibly revealing a connection between responses to biotic and abiotic stress. Also identified as a CTC Interacting Domain (CID) protein in a yeast two hybrid screen using the PAB2 protein as bait. Contains PAM2 like domain which mediates interaction with PABC domain in PAB2.O.I.H.G.
XAt3g01280820914VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1)Encodes a voltage-dependent anion channel (VDAC: AT3G01280/VDAC1, AT5G67500/VDAC2, AT5G15090/VDAC3, AT5G57490/VDAC4, AT5G15090/VDAC5). VDACs are reported to be porin-type, beta-barrel diffusion pores. They are prominently localized in the outer mitochondrial membrane and are involved in metabolite exchange between the organelle and the cytosol.O.I.H.G.
XAt3g12580820438HSP70 (heat shock protein 70)F:ATP binding;P:in 8 processes;C:cytosol, mitochondrion, cell wall, plasma membrane;OBMFPVAO.I.H.G.
XAt3g15352820770ATCOX17Encodes protein similar to yeast COX17, a copper-binding protein that mediates the delivery of Cu to the mitochondria for the assembly of a functional cytochrome oxidase complex.O.I.H.G.
XAt3g22231821788PCC1 (PATHOGEN AND CIRCADIAN CONTROLLED 1)Encodes a member of a novel 6 member Arabidopsis gene family. Expression of PCC1 is regulated by the circadian clock and is upregulated in response to both virulent and avirulent strains of Pseudomonas syringae pv. tomato.O.I.H.G.
XAt3g26830822298PAD3 (PHYTOALEXIN DEFICIENT 3)Mutations in pad3 are defective in biosynthesis of the indole derived phytoalexin camalexin. Encodes a cytochrome P450 enzyme that catalyzes the conversion of dihydrocamalexic acid to camalexin.O.I.H.G.
XAt3g28910822525MYB30 (MYB DOMAIN PROTEIN 30)transcription factor myb homologueO.I.H.G.
XAt3g28930822529AIG2 (AVRRPT2-INDUCED GENE 2)avrRpt2-induced gene that exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2O.I.H.G.
XAt3g44300823555NIT2 (nitrilase 2)Encodes an enzyme that catalyzes the hydrolysis of indole-3-acetonitrile (IAN) to indole-3-acetic acid (IAA) (nitrile aminohydrolase, EC 3.5.5.1) and IAN to indole-3-acetamide (IAM) at lower levels. Mutants have reduced sensitivity to IAN and are sensitive to IAA. This enzyme likely participates in other non-auxin-related metabolic pathways.O.I.H.G.
XAt3g45140823650LOX2 (LIPOXYGENASE 2)Chloroplast lipoxygenase required for wound-induced jasmonic acid accumulation in Arabidopsis.Mutants are resistant to Staphylococcus aureus and accumulate salicylic acid upon infection.O.I.H.G.
XAt3g45640823706ATMPK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE 3)Encodes a mitogen-activated kinase whose mRNA levels increase in response to touch, cold, salinity stress and chitin oligomers.Also functions in ovule development. Heterozygous MPK3 mutants in a homozygous MPK6 background are female sterile due to defects in integument development. MPK3 can be dephosphorylated by MKP2 in vitro.O.I.H.G.
XAt3g57240824891BG3 (BETA-1,3-GLUCANASE 3)encodes a member of glycosyl hydrolase family 17O.I.H.G.
XAt4g00860826213ATOZI1putative pathogenesis-related protein whose transcript level is induced in response to ozone and pathogenic Pseudomonas strains.O.I.H.G.
XAt4g15760827255MO1 (MONOOXYGENASE 1)Encodes a protein with similarity to monooxygenases that are known to degrade salicylic acid (SA).O.I.H.G.
XAt4g19660827710NPR4 (NPR1-like protein 4)Encodes a ankyrin repeat BTB/POZ domain-containing protein with 36% sequence identity with NPR1. Mutants are more susceptible to the bacterial pathogen Pseudomonas syringe pv. tomato DC3000 and to the fungal pathogen Erysiphe cichoracearum, but do not differ markedly from wild type in interaction with virulent and avirulent strains of the oomycete Peronospora parasitica. NPR4 is required for basal defense against pathogens, and may be implicated in the cross-talk between the SA- and JA-dependent signaling pathways.O.I.H.G.
XAt4g19690827713IRT1 (iron-regulated transporter 1)Fe(II) transport protein (IRT1)O.I.H.G.
XAt4g21610828248LOL2 (LSD ONE LIKE 2)Contains the same novel zinc finger motif with LSD1, a negative regulator of cell death and defense response. Due to differential splicing, it encodes two different proteins, one of which contains an additional, putative DNA binding motif. Northern analysis demonstrated that LOL2 transcripts containing the additional DNA binding motif are predominantly upregulated after treatment with both virulent and avirulent Pseudomonas syringae pv maculicola strains.O.I.H.G.
XAt4g37980829954ELI3-1 (ELICITOR-ACTIVATED GENE 3-1)F:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:response to bacterium, plant-type hypersensitive response;C:unknown;BOPFMAVO.I.H.G.
XAt4g37990829955ELI3-2 (ELICITOR-ACTIVATED GENE 3-2)Encodes an aromatic alcohol:NADP+ oxidoreductase whose mRNA levels are increased in response to treatment with a variety of phytopathogenic bacteria. Though similar to mannitol dehydrogenases, this enzyme does not have mannitol dehydrogenase activity.O.I.H.G.
XAt4g39950830154CYP79B2Belongs to cytochrome P450 and is involved in tryptophan metabolism. Converts Trp to indo-3-acetaldoxime (IAOx), a precursor to IAA and indole glucosinolates.O.I.H.G.
XAt4g39980830159DHS1 (3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE 1)Encodes a 2-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase, which catalyzes the first committed step in aromatic amino acid biosynthesis. Gene expression is induced by wounding and pathogenic bacteria Pseudomonas syringae.O.I.H.G.
XAt5g01600831720ATFER1Encodes a ferretin protein that is targeted to the chloroplast. Member of a Ferritin gene family. Gene expression is induced in response to iron overload and by nitric oxide. Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.O.I.H.G.
XAt5g02490831856heat shock cognate 70 kDa protein 2 (HSC70-2) (HSP70-2)F:ATP binding;P:protein folding, response to cadmium ion, response to heat, response to bacterium;C:cytosol, cell wall, plasma membrane;OBMFPVAO.I.H.G.
XAt5g03760831734ATCSLA09encodes a beta-mannan synthase that is required for agrobacterium-mediated plant genetic transformation involves a complex interaction between the bacterium and the host plant. 3' UTR is involved in transcriptional regulation and the gene is expressed in the elongation zone of the root.O.I.H.G.
XAt5g05730830457ASA1 (ANTHRANILATE SYNTHASE ALPHA SUBUNIT 1)ASA1 encodes the alpha subunit of anthranilate synthase, which catalyzes the rate-limiting step of tryptophan synthesis. ASA1 is induced by ethylene, and forms a link between ethylene signalling and auxin synthesis in roots.O.I.H.G.
XAt5g06320830520NHL3encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus, spermine and Pseudomonas syringae pv. tomato DC3000. The gene product is localized to the plasma membrane.O.I.H.G.
XAt5g15090831361VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3)Encodes a voltage-dependent anion channel (VDAC: AT3G01280/VDAC1, AT5G67500/VDAC2, AT5G15090/VDAC3, AT5G57490/VDAC4, AT5G15090/VDAC5). VDACs are reported to be porin-type, beta-barrel diffusion pores. They are prominently localized in the outer mitochondrial membrane and are involved in metabolite exchange between the organelle and the cytosol.O.I.H.G.
XAt5g24530832524DMR6 (DOWNY MILDEW RESISTANT 6)Encodes a putative 2OG-Fe(II) oxygenase that is defense-associated but required for susceptibility to downy mildew.O.I.H.G.
XAt5g26920832750CBP60G (CAM-BINDING PROTEIN 60-LIKE.G)Encodes a calmodulin-binding protein CBP60g (calmodulin binding protein 60-like.g). The calmodulin-binding domain is located near the N-terminus; calmodulin binding is dependent on Ca(2+). Inducible by both bacterial pathogen and MAMP (microbe-associated molecular pattern) treatments. Bacterial growth is enhanced in cbp60g mutants. cbp60g mutants also show defects in salicylic acid (SA) accumulation and SA signaling.O.I.H.G.
XAt5g54640835553RAT5 (RESISTANT TO AGROBACTERIUM TRANSFORMATION 5)Isolated from T-DNA insertion line, the rat5 mutant is deficient in T-DNA integration. Encodes histone2A protein.O.I.H.G.
XAt5g57490835853VDAC4 (VOLTAGE DEPENDENT ANION CHANNEL 4)Encodes a voltage-dependent anion channel (VDAC: AT3G01280/VDAC1, AT5G67500/VDAC2, AT5G15090/VDAC3, AT5G57490/VDAC4, AT5G15090/VDAC5). VDACs are reported to be porin-type, beta-barrel diffusion pores. They are prominently localized in the outer mitochondrial membrane and are involved in metabolite exchange between the organelle and the cytosol.O.I.H.G.
XAt5g57890835900anthranilate synthase beta subunit, putativeF:anthranilate synthase activity;P:tryptophan biosynthetic process, response to bacterium;C:unknown;BOFMAPO.I.H.G.
XAt5g60600836181HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)Encodes a chloroplast-localized hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) synthase (HDS), catalyzes the formation of HMBPP from 2-C-methyl-D-erythrytol 2,4-cyclodiphosphate (MEcPP). The HDS enzyme controls the penultimate steps of the biosynthesis of IPP and dimethylallyl diphosphate (DMAPP) via the MEP pathway and may serve as a metabolic control point for SA-mediated disease resistance. In the light, the electrons required for the reaction catalyzed by HDS are directly provided by the electron flow from photosynthesis via ferredoxin. In the dark however, the enzyme requires an electron shuttle: ferredoxin-NADP+ reductase.O.I.H.G.
XAt5g67500836886VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2)Encodes a voltage-dependent anion channel (VDAC: AT3G01280/VDAC1, AT5G67500/VDAC2, AT5G15090/VDAC3, AT5G57490/VDAC4, AT5G15090/VDAC5). VDACs are reported to be porin-type, beta-barrel diffusion pores. They are prominently localized in the outer mitochondrial membrane and are involved in metabolite exchange between the organelle and the cytosol.O.I.H.G.
CAt1g12210837774RFL1 (RPS5-like 1)RFL1 has high sequence similarity to the adjacent disease resistance (R) gene RPS5.O.I.H.G.
CAt1g33830840278avirulence-responsive family protein / avirulence induced gene (AIG1) family proteinF:GTP binding;P:response to bacterium;C:cellular_component unknown;MPOBO.I.H.G.
CAt1g33870840284avirulence-responsive protein, putative / avirulence induced gene protein, putative / AIG protein, putativeF:GTP binding;P:response to bacterium;C:cellular_component unknown;MPOBO.I.H.G.
CAt1g33880840285avirulence-responsive family protein / avirulence induced gene (AIG1) family proteinF:GTP binding;P:N-terminal protein myristoylation, response to bacterium;C:cellular_component unknown;MPOO.I.H.G.
CAt1g33890840286avirulence-responsive protein, putative / avirulence induced gene protein, putative / AIG protein, putativeF:GTP binding;P:response to bacterium;C:cellular_component unknown;MPOBFO.I.H.G.
CAt1g33900840287avirulence-responsive protein, putative / avirulence induced gene protein, putative / AIG protein, putativeF:GTP binding;P:response to bacterium;C:unknown;MPOBFVO.I.H.G.
CAt1g33910840288avirulence-responsive family protein / avirulence induced gene (AIG1) family proteinF:GTP binding;P:response to bacterium;C:unknown;MPOBAFVO.I.H.G.
CAt1g33930840290avirulence-responsive family protein / avirulence induced gene (AIG1) family proteinF:GTP binding;P:response to bacterium;C:unknown;MPOBFO.I.H.G.
CAt1g33950840292avirulence-responsive family protein / avirulence induced gene (AIG1) family proteinF:GTP binding;P:response to bacterium;C:unknown;MOPBFVO.I.H.G.
CAt1g33970840294avirulence-responsive protein, putative / avirulence induced gene protein, putative / AIG protein, putativeF:GTP binding;P:response to bacterium;C:cellular_component unknown;OMBFPAVO.I.H.G.
CAt2g26820817223ATPP2-A3 (Phloem protein 2-A3)F:carbohydrate binding;P:response to bacterium;C:unknown;MOBPFVAO.I.H.G.
CAt3g28940822530avirulence-responsive protein, putative / avirulence induced gene (AIG) protein, putativeF:molecular_function unknown;P:response to bacterium;C:plasma membrane, chloroplast;PFOBAO.I.H.G.
CAt4g09930826582avirulence-responsive family protein / avirulence induced gene (AIG1) family proteinF:GTP binding;P:response to bacterium;C:cellular_component unknown;MOBPFVAO.I.H.G.
CAt4g09940826584avirulence-responsive family protein / avirulence induced gene (AIG1) family proteinF:GTP binding;P:response to bacterium;C:plasma membrane;MOBFPAVO.I.H.G.
CAt4g09950826585avirulence-responsive family protein / avirulence induced gene (AIG1) family proteinF:GTP binding;P:response to bacterium;C:cellular_component unknown;MOBFPAVO.I.H.G.



The upper GO terms

Process ID Gene number Process name
GO:005170755A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from another living organism.



The lower GO terms

Process ID Gene number Process name
GO:000223710A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by molecules of bacterial origin such as peptides derived from bacterial flagellin.
GO:00096090A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a symbiotic bacterium, a bacterium living in close physical association with another organism.
GO:00160453The series of events in which a stimulus from a bacterium is received and converted into a molecular signal.
GO:0042742154Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
GO:00516720The chemical reactions and pathways resulting in the breakdown of the cell wall peptidoglycans of another organism.





Comparison with co-expressed genes



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